Glycine max; Russia; genotyping; molecular diversity; phenotyping; plant breeding; population structure; soybean; Ecology, Evolution, Behavior and Systematics; Ecology; Plant Science
Abstract :
[en] Soybean is a leguminous plant cultivated in many countries and is considered important in the food industry due to the high levels of oil and protein content in the beans. The high demand for soybeans and its products in the industry requires the expansion of cultivation areas. Despite climatic restrictions, West Siberia is gradually expanding its area of soybean cultivation. In this study, we present the first analysis of the population structure and genetic diversity of the 175 soybean Glycine max breeding lines and varieties cultivated in West Siberia (103 accessions) and other regions of Russia (72 accessions), and we compare them with the cultivated soybean varieties from other geographical locations. Principal component analysis revealed several genetic clusters with different levels of genetic heterogeneity. Studied accessions are genetically similar to varieties from China, Japan, and the USA and are genetically distant to varieties from South Korea. Admixture analysis revealed four ancestry groups based on genetic ancestry and geographical origin, which are consistent with the regions of cultivation and origin of accessions and correspond to the principal component analysis result. Population statistics, including nucleotide diversity, Tajima's D, and linkage disequilibrium, are comparatively similar to those observed for studied accessions of a different origin. This study provides essential population and genetic information about the unique collection of breeding lines and varieties cultivated in West Siberia and other Russian regions to foster further evolutionary, genome-wide associations and functional breeding studies.
Disciplines :
Genetics & genetic processes
Author, co-author :
Potapova, Nadezhda A; Kurchatov Genomic Center, Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia ; Institute for Information Transmission Problems (Kharkevich Institute) of the Russian Academy of Sciences, 127051 Moscow, Russia
Zlobin, Alexander ; Université de Liège - ULiège > GIGA > GIGA Medical Genomics - Unit of Animal Genomics ; Kurchatov Genomic Center, Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia ; Federal Research Center, Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia
Perfil'ev, Roman N ; Federal Research Center, Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia
Vasiliev, Gennady V ; Kurchatov Genomic Center, Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia ; Federal Research Center, Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia
Salina, Elena A; Kurchatov Genomic Center, Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia ; Federal Research Center, Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia
Tsepilov, Yakov A ; Kurchatov Genomic Center, Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia ; Federal Research Center, Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia
Language :
English
Title :
Population Structure and Genetic Diversity of the 175 Soybean Breeding Lines and Varieties Cultivated in West Siberia and Other Regions of Russia.
Publication date :
06 October 2023
Journal title :
Plants (Basel, Switzerland)
ISSN :
2223-7747
eISSN :
2223-7747
Publisher :
Multidisciplinary Digital Publishing Institute (MDPI), Switzerland
The genotyping and population structure of the 175 soybean accessions cultivated in Russia was funded by the Russian Science Foundation (RSF project No. 21-76-30003).
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