Ethnicity/genetics; Exome/genetics; Heterozygote; Homozygote; Humans; Polymorphism, Single Nucleotide; Genetic Variation; Ethnic Groups; Exome; Biophysics; Biochemistry; Chemistry (all); General Chemistry; General Medicine
Abstract :
[en] We studied the genetic diversity of the Yakut population using exome sequencing. We performed comparative analysis of the Yakut population and the populations that are included in the "1000 Genomes" project and we identified the alleles specific to the Yakut population. We showed, that the Yakuts population is a separate cluster between Europeans and East Asians.
Disciplines :
Genetics & genetic processes
Author, co-author :
Zlobin, Alexander ; Université de Liège - ULiège > GIGA > GIGA Medical Genomics - Unit of Animal Genomics ; Novosibirsk State University, Novosibirsk, 630090, Russia. defrag12@gmail.com ; Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia. defrag12@gmail.com
Sharapov, S Sh; Novosibirsk State University, Novosibirsk, 630090, Russia ; Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia
Guryev, V P; European Research Institute for the Biology of Ageing, University Medical Center Groningen, Groningen, The Netherlands
Bevova, M R; European Research Institute for the Biology of Ageing, University Medical Center Groningen, Groningen, The Netherlands
Tsepilov, Y A; Novosibirsk State University, Novosibirsk, 630090, Russia ; Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia
Sivtseva, T M; Research Institute of Health, Ammosov North-Eastern Federal University, Yakutsk, Russia
Boyarskih, U A; Novosibirsk State University, Novosibirsk, 630090, Russia ; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia
Sokolova, E A; Novosibirsk State University, Novosibirsk, 630090, Russia ; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia
Aulchenko, Y S; Novosibirsk State University, Novosibirsk, 630090, Russia ; Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia
Filipenko, M L; Novosibirsk State University, Novosibirsk, 630090, Russia ; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia
Osakovsky, V L; Research Institute of Health, Ammosov North-Eastern Federal University, Yakutsk, Russia
Language :
English
Title :
Population specific analysis of Yakut exomes.
Publication date :
May 2017
Journal title :
Doklady. Biochemistry and Biophysics
ISSN :
1607-6729
eISSN :
1608-3091
Publisher :
Maik Nauka Publishing / Springer SBM, United States
scite shows how a scientific paper has been cited by providing the context of the citation, a classification describing whether it supports, mentions, or contrasts the cited claim, and a label indicating in which section the citation was made.
Bibliography
Fedorova, S.A., Geneticheskie portrety narodov Respubliki Sakha, Yakutiya: analiz linii mitokhondrial’noi DNK i Y-khromosomy (Genetic Portraits of People of the Republic of Sakha, Yakutia: Analysis of Lines of Mitochondrial DNA and Y-Chromosome), YaNTs SORAN, 2008.
Fedorova, S.A., Reidla, M., Metspalu, E., Metspalu, M., Rootsi, S., Tambets, K., Trofimova, N., Zhadanov, S.I, Hooshiar Kashani, B., Olivieri, A., Voevoda, M.I., Osipova, L.P., Platonov, F.A., Tom-sky, M.I., Khusnutdinova, E.K., Torroni, A., and Villems, R., Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia, BMC Evol. Biol., 2013, vol. 13, no. 1, p. 127.
Sudmant, P.H., Mallick, S., Nelson, B.J., Hormozdiari, F., Krumm, N., Huddleston, J., Coe, B.P., Baker, C., Nordenfelt, S., Bamshad, M., Jorde, L.B., Posukh, O.L., Sahakyan, H., Watkins, W.S., Yepiskoposyan, L., Abdullah, M.S., Bravi, C.M., Capelli, C., Hervig, T., Wee, J.T.S., Tyler-Smith, C., van Driem, G., Romero, I.G., Jha, A.R., Karachanak-Yankova, S., Toncheva, D., Comas, D., Henn, B., Kivisild, T., Ruiz-Linares, A., Sajantila, A., Metspalu, E., Parik, J., Villems, R., Starikovskaya, E.B., Ayodo, G., Beall, C.M., Di Rienzo, A., Hammer, M., Khusainova, R., Khusnutdinova, E., Klitz, W., Winkler, C., Labuda, D., Metspalu, M., Tishkoff, S.A., Dryomov, S., Sukernik, R., Patterson, N., Reich, D., and Eichler. E.E., Global diversity, population stratification, and selection of human copy number variation, Science, 2015, vol. 349, no. 6253.
Langmead, B. and Salzberg, S.L, Fast gapped-read alignment with Bowtie 2, Nat. Methods, 2012, vol. 9, no. 4, pp. 357–359.
Schmutz, J., Wheeler, J., Grimwood, J., Dickson, M., Yang, J., Caoile, C., Bajorek, E., Black, S., Chan, Y.M., Denys, M., Escobar, J., Flowers, D., Fotopulos, D., Garcia, C., Gomez, M., Gonzales, E., Haydu, L., Lopez, F., Ramirez, L., Retterer, J., Rodriguez, A., Rogers, S., Salazar, A., Tsai, M., and Myers, R.M, Quality assessment of the human genome sequence, Nature, 2004, vol. 429, no. 6990, pp. 365–368.
DePristo, M.A., Banks, E., Poplin, R., Garimella, K.V., Maguire, J.R., Hartl, C., Philippakis, A.A., del Angel, G., Rivas, M.A., Hanna, M., McKenna, A., Fennell, T.J., Kernytsky, A.M., Sivachenko, A.Y., Cibulskis, K., Gabriel, S.B., Altshuler, D., and Daly, M.J., A framework for variation discovery and genotyping using nextgeneration DNA sequencing data, Nat. Genet., Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved, 2011, vol. 43, no. 5, pp. 491–498.
Manichaikul, A., Mychaleckyj, J.C., Rich, S.S., Daly, K., Sale, M., and Chen. W.M, Robust relationship inference in genome-wide association studies, Bioinformatics, 2010, vol. 26, no. 22, pp. 2867–2873.
McQuillan, R., Leutenegger, A.-L., Abdel-Rahman, R., Franklin, C.S., Pericic, M., Barac-Lauc, L., Smolej-Narancic, N., Janicijevic, B., Polasek, O., Tenesa, A., Macleod, A.K., Farrington, S.M., Ru-dan, P., Hayward, C., Vitart, V., Rudan, I., Wild, S.H., Dunlop, M.G., Wright, A.F., Campbell, H., and Wilson, J.F, Runs of homozygosity in European populations, Am. J. Hum. Genet. Elsevier, 2008, vol. 83, no. 3, pp. 359–372.
Stoltzfus, A. and Norris, R.W, On the causes of evolutionary transition: transversion bias, Mol. Biol. Evol., Oxford University Press, 2016, vol. 33, no. 3, pp. 595–602.
The dating of the first phase of ethnogenesis of the Yakuts and the beginning of the colonization of the territory of Yakutia [Electronic resource]. http://new.chronologia.org/volume10/turin_dat_jakuty. php#52 (accessed: 10.05.2015).
This website uses cookies to improve user experience. Read more
Save & Close
Accept all
Decline all
Show detailsHide details
Cookie declaration
About cookies
Strictly necessary
Performance
Strictly necessary cookies allow core website functionality such as user login and account management. The website cannot be used properly without strictly necessary cookies.
This cookie is used by Cookie-Script.com service to remember visitor cookie consent preferences. It is necessary for Cookie-Script.com cookie banner to work properly.
Performance cookies are used to see how visitors use the website, eg. analytics cookies. Those cookies cannot be used to directly identify a certain visitor.
Used to store the attribution information, the referrer initially used to visit the website
Cookies are small text files that are placed on your computer by websites that you visit. Websites use cookies to help users navigate efficiently and perform certain functions. Cookies that are required for the website to operate properly are allowed to be set without your permission. All other cookies need to be approved before they can be set in the browser.
You can change your consent to cookie usage at any time on our Privacy Policy page.