Baumgarten S. Cziesielski M. J. Thomas L. Michell C. T. Esherick L. Y. Pringle J. R. et al. (2018). Evidence for mi RNA-mediated modulation of the host transcriptome in cnidarian–dinoflagellate symbiosis. Mol. Ecol. 27, 403–418. doi: 10.1111/mec.14452
Baumgarten S. Simakov O. Esherick L. Y. Liew Y. J. Lehnert E. M. Michell C. T. et al. (2015). The genome of Aiptasia, a sea anemone model for coral symbiosis. Proc. Natl. Acad. Sci. 112, 11893–11898. doi: 10.1073/pnas.1513318112
Bieri T. Onishi M. Xiang T. Grossman A. R. Pringle J. R. (2016). Relative contributions of various cellular mechanisms to loss of algae during cnidarian bleaching. PloS One 11, e0152693. doi: 10.1371/journal.pone.0152693
Bourne D. G. Morrow K. M. Webster N. S. (2016). Insights into the coral microbiome: underpinning the health and resilience of reef ecosystems. Annu. Rev. Microbiol. 70, 317–340. doi: 10.1146/annurev-micro-102215-095440
Bucher M. Wolfowicz I. Voss P. A. Hambleton E. A. Guse A. (2016). Development and symbiosis establishment in the cnidarian endosymbiosis model Aiptasia sp. Sci. Rep. 6, 19867. doi: 10.1038/srep19867
Cleves P. A. Strader M. E. Bay L. K. Pringle J. R. Matz M. V. (2018). CRISPR/Cas9-mediated genome editing in a reef-building coral. Proc. Natl. Acad. Sci 115 (20), 5235–5240. doi: 10.1073/pnas.1722151115
Dörr M. Denger J. Maier C. S. Kirsch J. V. Manns H. Voolstra C. R. (2023). Short-term heat stress assays resolve effects of host strain, repeat stress, and bacterial inoculation on Aiptasia thermal tolerance phenotypes. Coral Reefs 42, 1271–1281. doi: 10.1007/s00338-023-02427-y
Dungan A. M. Hartman L. M. Blackall L. L. Van Oppen M. J. (2022). Exploring microbiome engineering as a strategy for improved thermal tolerance in Exaiptasia diaphana. J. Appl. Microbiol. 132, 2940–2956. doi: 10.1111/jam.15465
Fransolet D. Roberty S. Plumier J. C. (2012). Establishment of endosymbiosis: the case of cnidarians and Symbiodinium. J. Exp. Mar. Biol. Ecol. 420, 1–7. doi: 10.1016/j.jembe.2012.03.015
Fransolet D. Roberty S. Herman A.-C. Tonk L. Hoegh-Guldberg O. Plumier J.-C. (2013). Increased cell proliferation and mucocyte density in the sea anemone Aiptasia pallida recovering from bleaching. PloS One 8, e65015. doi: 10.1371/journal.pone.0065015
Hartman L. M. Van Oppen M. J. H. Blackall L. L. (2020). Microbiota characterization of Exaiptasia diaphana from the Great Barrier Reef. Anim. Microbiome 2, 1–14. doi: 10.1186/s42523-020-00029-5
Herrera M. Ziegler M. Voolstra C. R. Aranda M. (2017). Laboratory-cultured strains of the sea anemone Exaiptasia reveal distinct bacterial communities. Front. Mar. Sci. 4, 115. doi: 10.3389/fmars.2017.00115
Hughes T. P. Barnes M. L. Bellwood D. R. Cinner J. E. Cumming G. S. Jackson J. B. C. et al. (2017). Coral reefs in the anthropocene. Nature 546, 82–90. doi: 10.1038/nature22901
Jacobovitz M. R. Hambleton E. A. Guse A. (2023). Unlocking the complex cell biology of coral–dinoflagellate symbiosis: A model systems approach. Annu. Rev. Genet. 57, 411–434. doi: 10.1146/annurev-genet-072320-125436
Jones V. Bucher M. Hambleton E. A. Guse A. (2018). Microinjection to deliver protein, mRNA, and DNA into zygotes of the cnidarian endosymbiosis model Aiptasia sp. Sci. Rep. 8, 16437. doi: 10.1038/s41598-018-34773-1
LaJeunesse T. C. Parkinson J. E. Gabrielson P. W. Jeong H. J. Reimer J. D. Voolstra C. R. et al. (2018). Systematic revision of Symbiodiniaceae highlights the antiquity and diversity of coral endosymbionts. Curr. Biol. 28, 2570–2580. e2576. doi: 10.1016/j.cub.2018.07.008
Lehnert E. M. Mouchka M. E. Burriesci M. S. Gallo N. D. Schwarz J. A. Pringle J. R. (2014). Extensive differences in gene expression between symbiotic and aposymbiotic cnidarians. G3: Genes Genomes Genet. 4, 277–295. doi: 10.1534/g3.113.009084
Maegele I. Rupp S. Oezbek S. Guse A. Hambleton E. A. Holstein T. W. (2023). A predatory gastrula leads to symbiosis-independent settlement in Aiptasia. bioRxiv 2005, 2026.542442. doi: 10.1101/2023.05.26.542442
Matthews J. L. Oakley C. A. Lutz A. Hillyer K. E. Roessner U. Grossman A. R. et al. (2018). Partner switching and metabolic flux in a model cnidarian–dinoflagellate symbiosis. Proc. R. Soc. B: Biol. Sci. 285 (1892), 20182336. doi: 10.1098/rspb.2018.2336
Matthews J. L. Sproles A. E. Oakley C. A. Grossman A. R. Weis V. M. Davy S. K. (2016). Menthol-induced bleaching rapidly and effectively provides experimental aposymbiotic sea anemones (Aiptasia sp.) for symbiosis investigations. J. Exp. Biol. 219, 306–310. doi: 10.1242/jeb.128934
Peixoto R. S. Rosado P. M. Leite D. C. D. A. Rosado A. S. Bourne D. G. (2017). Beneficial microorganisms for corals (BMC): proposed mechanisms for coral health and resilience. Front. Microbiol. 8, 341. doi: 10.3389/fmicb.2017.00341
Rädecker N. Escrig S. Spangenberg J. E. Voolstra C. R. Meibom A. (2023). Coupled carbon and nitrogen cycling regulates the cnidarian–algal symbiosis. Nat. Commun. 14, 6948. doi: 10.1038/s41467-023-42579-7
Rädecker N. Raina J.-B. Pernice M. Perna G. Guagliardo P. Kilburn M. R. et al. (2018). Using aiptasia as a model to study metabolic interactions in cnidarian-symbiodinium symbioses. Front. Physiol. 9. doi: 10.3389/fphys.2018.00214
Röthig T. Costa R. M. Simona F. Baumgarten S. Torres A. F. Radhakrishnan A. et al. (2016). Distinct bacterial communities associated with the coral model Aiptasia in aposymbiotic and symbiotic states with Symbiodinium. Front. Mar. Sci. 3, 234. doi: 10.3389/fmars.2016.00234
Santoro E. P. Borges R. M. Espinoza J. L. Freire M. Messias C. S. Villela H. D. et al. (2021). Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality. Sci. Adv. 7, eabg3088. doi: 10.1126/sciadv.abg3088
Simona F. Zhang H. Voolstra C. R. (2019). Evidence for a role of protein phosphorylation in the maintenance of the cnidarian–algal symbiosis. Mol. Ecol. 28, 5373–5386. doi: 10.1111/mec.15298
Sproles A. E. Oakley C. A. Matthews J. L. Peng L. Owen J. G. Grossman A. R. et al. (2019). Proteomics quantifies protein expression changes in a model cnidarian colonised by a thermally tolerant but suboptimal symbiont. ISME J. 13, 2334–2345. doi: 10.1038/s41396-019-0437-5
Stévenne C. Micha M. Plumier J.-C. Roberty S. (2021). Corals and sponges under the light of the holobiont concept: how microbiomes underpin our understanding of marine ecosystems. Front. Mar. Sci. 8. doi: 10.3389/fmars.2021.698853
Tivey T. R. Coleman T. J. Weis V. M. (2022). Spatial and temporal patterns of symbiont colonization and loss during bleaching in the model sea anemone Aiptasia. Front. Mar. Sci. 9, 808696. doi: 10.3389/fmars.2022.808696
Weis V. M. Davy S. K. Hoegh-Guldberg O. Rodriguez-Lanetty M. Pringle J. R. (2008). Cell biology in model systems as the key to understanding corals. Trends Ecol. Evol. 23, 369–376. doi: 10.1016/j.tree.2008.03.004
Wilkinson C. R. (1999). Global and local threats to coral reef functioning and existence: review and predictions. Mar. Freshw. Res. 50, 867–878. doi: 10.1071/MF99121
Wolfowicz I. Baumgarten S. Voss P. A. Hambleton E. A. Voolstra C. R. Hatta M. et al. (2016). Aiptasia sp. larvae as a model to reveal mechanisms of symbiont selection in cnidarians. Sci. Rep. 6, 32366. doi: 10.1038/srep32366
Wuerz M. Lawson C. A. Oakley C. A. Possell M. Wilkinson S. P. Grossman A. R. et al. (2023). Symbiont identity impacts the microbiome and volatilome of a model cnidarian-dinoflagellate symbiosis. Biology 12, 1014. doi: 10.3390/biology12071014
Xiang N. Rädecker N. Pogoreutz C. Cárdenas A. Meibom A. Wild C. et al. (2022). Presence of algal symbionts affects denitrifying bacterial communities in the sea anemone Aiptasia coral model. ISME Commun. 2, 105. doi: 10.1038/s43705-022-00190-9
