Etude comparative de la diversité et de la structure génétique de populations sauvages de Phaseolus lunatus L. à l'aide des marqueurs enzymatiques et microsatellites
Ouedraogo, M.; Maquet, A.; Baudoin, Jean-Pierre
2005 • In Biotechnologie, Agronomie, Société et Environnement, 9 (3), p. 195-205
Etude comparative de la diversité et de la structure génétique de populations sauvages de Phaseolus lunatus L. à l'aide des marqueurs enzymatiques et microsatellites
Publication date :
2005
Journal title :
Biotechnologie, Agronomie, Société et Environnement
ISSN :
1370-6233
eISSN :
1780-4507
Publisher :
Presses Agronomiques de Gembloux, Gembloux, Belgium
Applied Maths. (1997). GelCompar. Comparative analysis of electrophoresis patterns Version 4.2. Available on http://applied-maths.com/home.html.
Awadalla P., Ritland K. (1997). Microsatellite variation and evolution in the Mimulus guttatus species complex with contrasting mating systems. Mol. Biol. Evol. 14, p. 1023–1034.
Bank Hvd., Bank Mvd., Wyk BEv. (2001). A review of use of allozyme electrophoresis in plant systematics. Biochem. Syst. Ecol. 29, p. 469–483.
Baudet JC. (1977). Origine et classification des espèces cultivées du genre Phaseolus. Bull. Soc. R. Bot. Belg. 110, p. 65–76.
Buth DG., Murphy RW. (1999). The use of isozyme characters in systematic studies. Biochem. Syst. Ecol. 27, p. 117–129.
Charlesworth D., Wright SI. (2001). Breeding systems and genome evolution. Curr. Opin. Genet. Dev. 11, p. 685–690.
Crossa J., Hernandez CM., Bretting P., Eberhart SA., Taba S. (1993). Statistical genetic considerations for maintaining germ plasm collections. Theor. Appl. Genet. 86, p. 673–678.
Degreef J., Baudoin JP., Rocha OJ. (1997). Case studies on breeding systems and its consequences for germplasm conservation. 2. Demography of wild Lima populations in the Central Valley of Costa Rica. Genet. Resour. Crop Evol. 44, p. 429–438.
Degreef J., Rocha OJ., Vanderborght T., Baudoin JP. (2002). Soil seed bank and seed dormancy in wild populations of Lima bean (Fabaceae): considerations for in situ and ex situ conservation. Am. J. Bot. 89, p. 1644–1650.
Del Castillo RF. (1994). Factors influencing the genetic structure of Phacelia dubia, a species with a seed bank and large fluctuations in population size. Heredity 72, p. 446–458.
Desplanque B., Boudry P., Broomberg K., Saumitou-Laprade P., Cuguen J., Van Dijk H. (1999). Genetic diversity and gene flow between wild, cultivated and weedy forms of Beta vulgaris L. (Chenopodiaceae), assessed by RFLP and microsatellite markers. Theor. Appl. Genet. 98, p. 1194–1201.
Djè Y., Forcioli D., Ater M., Lefèbvre C., Vekemans X. (1999). Assessing population genetic structure of sorghum landraces from north-western Morocco using allozyme and microsatellite markers. Theor. Appl. Genet. 99, p. 157–163.
Djè Y., Heuertz M., Lefèbvre C., Vekemans X. (2000). Assessment of genetic diversity within and among germplasm accessions in cultivated sorghum using microsatellites markers. Theor. Appl. Genet. 100, p. 918–925.
Escalante AM., Coello G., Eguiarte LE., Pinero D. (1994). Genetic structure and mating systems in wild and cultivated populations of Phaseolus coccineus and P. vulgaris (Fabaceae). Am. J. Bot. 81, p. 1096–1103.
Fahima T., Röder MS., Wendehake K., Kirzhner VM., Nevo E. (2002). Microsatellite polymorphism in natural populations of wild emmer wheat, Triticum dicoccoides, in Israel. Theor. Appl. Genet. 104, p. 17–29.
Ford R., Le Roux K., Itman C., Brouwer JB., Taylor PWJ. (2002). Diversity analysis and genotyping in Pisum with sequence tagged microsatellite site (STMS) primers. Euphytica 124, p. 397–405.
Gao Lz., Hong SGDy. (2000). Allozyme variation and population genetic structure of common wild rice Oryza rufipogon Griff. in China. Theor. Appl. Genet. 101, p. 494–502.
Goudet J. (1995). Fstat (ver 1.2): a computer program to calculate F-statistics. J. Hered. 86, p. 485–486.
Hamrick Jl., Godt JW. (1989). Allozyme diversity in plant species. In Brown AHD., Cleg MT., Kalher AL., Weir BS. (Eds). Plant population genetics, breeding and genetic resources. Sunderland, Massachussets, USA: Sinauer Associates, p 43–63
Hamrick Jl., Godt JW. (1997). Allozyme diversity in cultivated crops. Crop Sci. 37, p. 26–30.
Hardy OJ., Dubois S., Zoro Bi I., Baudoin JP. (1997). Gene dispersal and its consequences on the genetic structure of wild populations of Lima bean (Phaseolus lunatus L.) au Costa Rica. Plant Genet. Resour. Newsl 109, p. 1–6.
Hernandez P., Laurie DA., Martin A., Snape JW. (2002). Utility of barley and wheat simple sequence repeat (SSR) markers for genetic analysis of Hordeum chilense and tritordeum. Theor. Appl. Genet. 104, p. 735–739.
Huth MK., Huth HW. (2001). Genetic diversity and population structure of wild lentil tare. Crop Sci. 41, p. 1940–1946.
Lodieu J. (1997). Développement d'une stratégie de conservation in situ du Phaseolus lunatus L. dans la Vallée Centrale du Costa Rica : intégration du système d'information géographique. Travail de fin d’études. Gembloux, Belgique : Faculté Universitaire des Sciences agronomiques,.
Lu HL., Li JS., Liu JL., Bernado R. (2002). Allozyme polymorphisms of maize populations from southwestern China. Theor. Appl. Genet. 104, p. 119–126.
Maguire TL., Peakall R., Saenger P. (2002). Comparative analysis of genetic diversity in the mangrove species Avicennia marina (Forsk.) Vierh. (Avicenniaceae) detected by AFLPs and SSRs. Theor. Appl. Genet. 104, p. 388–398.
Maquet A. (1995). Étude de la diversité génétique de la légumineuse alimentaire Phaseolus lunatus L. par l'analyse des caractères morphophysiologiques et de marqueurs protéiques. Doctorat. Gembloux, Belgique : Faculté universitaire des Sciences agronomiques.
Maquet A., Zoro Bi I., Delvaux M., Wathelet B., Baudoin JP. (1997). Genetic structure of a Lima bean base collection using allozyme markers. Theor. Appl. Genet. 95, p. 980–991.
Masumbuko B. (1999). Étude du flux génique et de la distribution spatiale des gènes chez les populations sauvages du haricot de Lima, Phaseolus lunatus L., originaires de la vallée centrale du Costa Rica. Travail de fin d’études. Gembloux, Belgique : Faculté Universitaire des Sciences agronomiques.
McCue KA., Holtsford TP. (1998). Seed bank influences on genetic diversity in the rare annual Clarkia springvillensis (Onagraceae). Am. J. Bot. 85, p. 30–36.
Meurrens F., Degreef J., Rocha OJ., Baudoin JP. (2001). Demographic study in microconservation sites to maintain in situ wild Lima beans (Phaseolus lunatus L.) in the Central Valley of Costa Rica. Plant Genet. Resour. Newsl. 128, p. 45–50.
Murphy RW., Sites JW., Buth JR., Buth DG., Haufler CH. (1990). Proteins I: Isozyme electrophoresis. In Hillis DM., Moritz C. (Eds). Molecular systematics. Sunderland, Massachusetts USA: Sinauer Associates, p. 45–126.
Ouédraogo M. (2003). Étude de la variabilité génétique et du flux de gènes chez des populations sauvages de Phaseolus lunatus L. dans la vallée centrale du Costa Rica à l’aide des marqueurs enzymatiques et microsatellites. Doctorat. Gembloux, Belgique : Faculté Universitaire des Sciences Agronomiques de Gembloux.
Pasquet RS. (2000). Allozyme diversity of cultivated cowpea Vigna unguiculata (L.) Walp. Theor. Appl. Genet. 101, p. 211–219.
Rocha OJ., Macaya G., Baudoin JP. (1997). Causes of local extinction and recolonization, determined by 3 years of monitoring wild populations of Phaseolus lunatus L. in the Central Valley of Costa Rica. Plant Genet. Resour. Newsl. 112, p. 44–48.
Sefc KM., Lopes MS., Lefort F., Botta R., Roubelakis-Angelakis KA., Ibanez J., Pejié I., Wagner HW., Glossel J., Steinkellner H. (2000). Microsatellite variability in grapevine cultivars from different European regions and evaluation of assignment testing to assess the geographic origin of cultivars. Theor. Appl. Genet. 100, p. 498–505.
Shepherd M., Cross M., Maguire TL., Dieters MJ., Williams CG., Henry RJ. (2002). Transpecific microsatellites for hard pines. Theor. Appl. Genet. 104, p. 819–827.
Slatkin M. (1980). The distribution of mutant alleles in a subdivided population. Genetica 95, p. 503–524.
Stachel M., Lelley T., Grausgruber H., Vollmann J. (2000). Application of microsatellites in wheat (Triticum aestivum L.) for studying genetic differentiation caused by selection for adaptation and use. Theor. Appl. Genet. 100, p. 242–248.
Tanaka K., Tsumura Y., Nakamura T. (1999). Development and polymorphism of microsatellite markers for Fagus crenata and the closely related species, F. japonica. Theor. Appl. Genet. 99, p. 11–15.
Tautz D. (1989). Hypervariability of simple sequence repeats as a general source for polymorphic markers. Nucleic Acids Resour. 17, p. 6463–6471.
Voelker RA., Schaffer HE., Mukai T. (1980). Spontaneous allozyme mutations in Drosophila melanogaster: rate of occurrence and nature of the mutants. Genetics 94, p. 961–968.
Weber JL., Wong C. (1993). Mutation of human short tandem repeats. Hum. Mol. Genet. 2, p. 1123–1128.
Wright S. (1978). Evolution and the genetics of populations. Vol 4. Variability within and among natural populations. Chicago: University of Chicago Press.
Yeh FC., Boyle TJB., (1997). Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belg. J. Bot. 129, p. 157.
Zoro Bi I. (1999). Variabilité génétique des populations sauvages de Phaseolus lunatus L. dans la vallée central du Costa Rica et ses implications dans la mise au point d'une stratégie de conservation in situ. Doctorat. Gembloux, Belgique : Faculté universitaire des Sciences agronomiques de Gembloux.
Zoro Bi I., Maquet A., Wathelet B., Baudoin JP. (1997). Genetic control of alcohol dehydrogenase, malate dehydrogenase, and phosphoglucomutase isozymes in lima bean (Phaseolus lunatus L.). Plant Breed. 116, p. 181–185.
Zoro Bi I., Maquet A., Degreef J., Wathelet B., Baudoin JP. (1998). Sample size for collecting seeds in germplasm conservation: the case of the Lima bean (Phaseolus lunatus L.). Theor. Appl. Genet. 97, p. 187–194.
Zoro Bi I., Maquet A., Wathelet B., Baudoin JP. (1999). Genetic control of isozymes in the primary gene pool Phaseolus lunatus L. Biotechnol. Agron. Soc. Environ. 3, p. 10–27.
