Article (Scientific journals)
Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology.
Halilaj, Iva; Oberije, Cary; Chatterjee, Avishek et al.
2022In Biomedicines, 10 (11), p. 2679
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Keywords :
decision support; open-source software; prediction models; prediction tool; web application; General Biochemistry, Genetics and Molecular Biology; Medicine (miscellaneous)
Abstract :
[en] (1) Background: The main aim was to develop a prototype application that would serve as an open-source repository for a curated subset of predictive and prognostic models regarding oncology, and provide a user-friendly interface for the included models to allow online calculation. The focus of the application is on providing physicians and health professionals with patient-specific information regarding treatment plans, survival rates, and side effects for different expected treatments. (2) Methods: The primarily used models were the ones developed by our research group in the past. This selection was completed by a number of models, addressing the same cancer types but focusing on other outcomes that were selected based on a literature search in PubMed and Medline databases. All selected models were publicly available and had been validated TRIPOD (Transparent Reporting of studies on prediction models for Individual Prognosis Or Diagnosis) type 3 or 2b. (3) Results: The open source repository currently incorporates 18 models from different research groups, evaluated on datasets from different countries. Model types included logistic regression, Cox regression, and recursive partition analysis (decision trees). (4) Conclusions: An application was developed to enable physicians to complement their clinical judgment with user-friendly patient-specific predictions using models that have received internal/external validation. Additionally, this platform enables researchers to display their work, enhancing the use and exposure of their models.
Disciplines :
Oncology
Author, co-author :
Halilaj, Iva ;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands ; Health Innovation Ventures, 6229 EV Maastricht, The Netherlands
Oberije, Cary ;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
Chatterjee, Avishek;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
van Wijk, Yvonka;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
Rad, Nastaran Mohammadian;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
Galganebanduge, Prabash;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
Lavrova, Elizaveta  ;  Université de Liège - ULiège > GIGA ; The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
Primakov, Sergey;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
Widaatalla, Yousif;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
Wind, Anke;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
Lambin, Philippe ;  The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6211 LK Maastricht, The Netherlands
Language :
English
Title :
Open Source Repository and Online Calculator of Prediction Models for Diagnosis and Prognosis in Oncology.
Publication date :
23 October 2022
Journal title :
Biomedicines
eISSN :
2227-9059
Publisher :
MDPI AG, Switzerland
Volume :
10
Issue :
11
Pages :
2679
Peer reviewed :
Peer Reviewed verified by ORBi
European Projects :
H2020 - 766276 - PREDICT - A new era in personalised medicine: Radiomics as decision support tool for diagnostics and theragnostics in oncology
H2020 - 101034347 - OPTIMA - Optimal treatment for patients with solid tumours in Europe through Artificial intelligence
Funders :
EU - European Union [BE]
Available on ORBi :
since 12 October 2023

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