[en] Timely and accurate mapping of leaf area index (LAI) in vineyards plays an important role for management choices in precision agricultural practices. However, only a little work has been done to extract the LAI of pergola-trained vineyards using higher spatial resolution remote sensing data. The main objective of this study was to evaluate the ability of unmanned aerial vehicle (UAV) imageries to estimate the LAI of pergola-trained vineyards using shallow and deep machine learning (ML) methods. Field trials were conducted in different growth seasons in 2021 by collecting 465 LAI samples. Firstly, this study trained five classical shallow ML models and an ensemble learning model by using different spectral and textural indices calculated from UAV imageries, and the most correlated or useful features for LAI estimations in different growth stages were differentiated. Then, due to the classical ML approaches need the arduous computation of multiple indices and feature selection procedures, another ResNet-based convolutional neural network (CNN) model was constructed which can be directly fed by cropped images. Furthermore, this study introduced a new image data augmentation method which is applicable to regression problems. Results indicated that the textural indices performed better than spectral indices, while the combination of them can improve estimation results, and the ensemble learning method showed the best among classical ML models. By choosing the optimal input image size, the CNN model we constructed estimated the LAI most effectively without extracting and selecting the features manually. The proposed image data augmentation method can generate new training images with new labels by mosaicking the original ones, and the CNN model showed improved performance after using this method compared to those using only the original images, or augmented by rotation and flipping methods. This data augmentation method can be applied to other regression models to extract growth parameters of crops using remote sensing data, and we conclude that the UAV imagery and deep learning methods are promising in LAI estimations of pergola-trained vineyards.
Disciplines :
Agriculture & agronomy
Author, co-author :
Ilniyaz, Osman; State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China ; School of Resource and Environmental Sciences, Wuhan University, Wuhan, China ; Research Center for Ecology and Environment of Central Asia, Chinese Academy of Sciences, Urumqi, China
Du, Qingyun; School of Resource and Environmental Sciences, Wuhan University, Wuhan, China ; Key Laboratory of GIS, Ministry of Education, Wuhan University, Wuhan, China ; Key Laboratory of Digital Mapping and Land Information Application Engineering, National Administration of Surveying, Mapping and Geoinformation, Wuhan University, Wuhan, China ; Collaborative Innovation Center of Geospatial Technology, Wuhan University, Wuhan, China
Shen, Huanfeng; School of Resource and Environmental Sciences, Wuhan University, Wuhan, China
He, Wenwen; School of Resource and Environmental Sciences, Wuhan University, Wuhan, China
Feng, Luwei; School of Resource and Environmental Sciences, Wuhan University, Wuhan, China
Azadi, Hossein ; Université de Liège - ULiège > TERRA Research Centre > Modélisation et développement ; State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China ; Research Center for Ecology and Environment of Central Asia, Chinese Academy of Sciences, Urumqi, China ; Department of Geography, Ghent University, Ghent, Belgium ; Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Prague, Czech Republic
Kurban, Alishir; State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China ; Research Center for Ecology and Environment of Central Asia, Chinese Academy of Sciences, Urumqi, China
Chen, Xi; Research Center for Ecology and Environment of Central Asia, Chinese Academy of Sciences, Urumqi, China
Language :
English
Title :
Leaf area index estimation of pergola-trained vineyards in arid regions using classical and deep learning methods based on UAV-based RGB images
This work was jointly funded by the National Natural Science Foundation of China (Grant No. 32071655; 42230708) and by Chinese Academy of Sciences President's International Fellowship Initiative (2021VCA0004; 2020VCA0015).We would like to thank Rosul Memet who works in the Science and Technology Bureau of Turpan for lending the UAV for field campaigns and for providing other related information about vineyards. We would also like to thank Abliz Ilniyaz, Erkinjan Abliz, Sulayman Abdul, Dawut Hoshur, and Ghoji Mengnik for their help in field measurements.
Addai, I.K., Alimiyawo, M., Graphical determination of leaf area index and its relationship with growth and yield parameters of sorghum (Sorghum bicolor L. Moench) as affected by fertilizer application. J. Agron. 14:4 (2015), 272–278.
Ahmad, I.S., Reid, J.F., Evaluation of colour representations for maize images. J. Agric. Eng. Res. 63 (1996), 185–195.
An, K., Meng, J.A., Voting-averaged combination method for regressor ensemble. Adv. Intelligent Comput. Theories Appl. 6215 (2010), 540–546.
Baret, F., Hagolle, O., Geiger, B., Bicheron, P., Miras, B., Huc, M., Berthelot, B., Nino, F., Weiss, M., Samain, O., Roujean, J.L., Leroy, M., LAI, fAPAR and fCover CYCLOPES global products derived from VEGETATION - Part 1: Principles of the algorithm. Remote Sens. Environ. 110 (2007), 275–286.
Baret, F., Weiss, M., Lacaze, R., Camacho, F., Makhmara, H., Pacholcyzk, P., Smets, B., GEOV1: LAI and FAPAR essential climate variables and FCOVER global time series capitalizing over existing products. Part1: Principles of development and production. Remote Sens. Environ. 137 (2013), 299–309.
Alexey Bochkovskiy, Chien-Yao Wang, and Hong-Yuan Mark Liao, 2020. YOLOv4: Optimal Speed and Accuracy of Object Detection, ArXiv/2004.10934.
Bonan, G.B., Land atmosphere interactions for climate system models - Coupling biophysical, biogeochemical, and ecosystem dynamical processes. Remote Sens. Environ. 51 (1995), 57–73.
Bouguettaya, A., Zarzour, H., Kechida, A., Taberkit, A.M., Deep learning techniques to classify agricultural crops through UAV imagery: A review. Neural Comput. & Applic. 34 (2022), 9511–9536.
Breda, N.J.J., Ground-based measurements of leaf area index: a review of methods, instruments and current controversies. J. Exp. Bot. 54 (2003), 2403–2417.
Breiman, L., Random forests. Mach. Learn. 45 (2001), 5–32.
Brewer, K., Lottering, R., Peerbhay, K., Remote sensing of invasive alien wattle using image texture ratios in the low-lying Midlands of KwaZulu-Natal, South Africa. Remote Sens. Applic. Soc. Environ., 26, 2022, 100769.
Broge, N.H., Leblanc, E., Comparing prediction power and stability of broadband and hyperspectral vegetation indices for estimation of green leaf area index and canopy chlorophyll density. Remote Sens. Environ. 76:2 (2001), 156–172.
Darnmer, K.H., Wollny, J., Giebel, A., Estimation of the Leaf Area Index in cereal crops for variable rate fungicide spraying. Eur. J. Agron. 28 (2008), 351–360.
De Bei, R., Fuentes, S., Gilliham, M., Tyerman, S., Edwards, E., Bianchini, N., Smith, J., Collins, C., VitiCanopy: A free computer app to estimate canopy vigor and porosity for grapevine. Sensors, 16, 2016, 585.
Terrance DeVries, and Graham W. Taylor, 2017. Improved regularization of convolutional neural networks with cutout. In: arXiv:1708.04552.
Escadafal, R., Belghith, A., and Moussa, H.B. 1994. Indices spectraux pour la teledetection de la degradation des milieux naturels en tunisie aride. In: Actes du 6eme Symposium international sur les mesures physiques et signatures en télédétection, pp. 253–59. Val d'Isère (France).
Fuentes, S., Chacon, G., Torrico, D.D., Zarate, A., Viejo, C.G., Spatial variability of aroma profiles of cocoa trees obtained through computer vision and machine learning modelling: A cover photography and high spatial remote sensing application. Sensors, 19, 2019, 3054.
Gao, L., Yang, G., Li, C., Feng, H., Boya, X.u., Wang, L., Dong, J., Kui, F.u., Application of an improved method in retrieving leaf area index combined spectral index with PLSR in hyperspectral data generated by unmanned aerial vehicle snapshot camera. Acta Agron. Sin. 43 (2017), 549–557.
Gitelson, A.A., Kaufman, Y.J., Stark, R., Rundquist, D., Novel algorithms for remote estimation of vegetation fraction. Remote Sens. Environ. 80 (2002), 76–87.
Haralick, R.M., Shanmugam, K., Dinstein, I., Textural features for image classification. IEEE Trans. Syst. Man Cybern. 3 (1973), 610–621.
Hasan, U., Sawut, M., Chen, S.S., Estimating the leaf area index of winter wheat based on unmanned aerial vehicle RGB-image parameters. Sustainability, 11, 2019, 6829.
Hicks, S.K., Lascano, R.J., Estimation of leaf-area index for cotton canopies using the Li-Cor Lai-2000 plant canopy analyzer. Agron. J. 87 (1995), 458–464.
Hong, G.W., Luo, M.R., Rhodes, P.A., A study of digital camera colorimetric characterization based on polynomial modeling. Color Res. Appl. 26 (2001), 76–84.
Ibaraki, Y., Optical and physiological properties of a plant canopy. Kozai, T., Fujiwara, K., Runkle, E.S., (eds.) LED Lighting for Urban Agriculture, 2016, Springer Singapore, Singapore, 125–135.
Ilniyaz, O., Kurban, A., Du, Q.Y., Leaf area index estimation of pergola-trained vineyards in arid regions based on UAV RGB and multispectral data using machine learning methods. Remote Sens. (Basel), 14, 2022, 415.
Janousek, J., Jambor, V., Marcon, P., Dohnal, P., Synkova, H., Fiala, P., Using UAV-based photogrammetry to obtain correlation between the vegetation indices and chemical analysis of agricultural crops. Remote Sens. (Basel), 13, 2021, 1878.
Jere Kaivosoja, Roope Näsi, Teemu Hakala, Niko Viljanen, and Eija Honkavaara, 2017. Applying Different Remote Sensing Data to Determine Relative Biomass Estimations of Cereals for Precision Fertilization Task Generation. In: 8th International Conference on Information and Communication Technologies in Agriculture, Food and Environment (HAICTA 2017), pp. 670–80, Chania, Greece.
Kalles, D., Morris, T., Efficient incremental induction of decision trees. Mach. Learn. 24 (1996), 231–242.
Kamal, M., Sidik, F., Prananda, A.R.A., Mahardhika, S.A., Mapping leaf area index of restored mangroves using worldview-2 imagery in Perancak Estuary, Bali, Indonesia. Remote Sensing Applications-Society and Environment, 23, 2021, 100567.
Kanning, M., Kuhling, I., Trautz, D., Jarmer, T., High-resolution UAV-based hyperspectral imagery for LAI and chlorophyll estimations from wheat for yield prediction. Remote Sens. (Basel), 10, 2018, 2000.
Kataoka, T., Kaneko, T., Okamoto, H., and Hata, S., 2003. Crop growth estimation system using machine vision, In: Proceedings of the 2003 Ieee/Asme International Conference on Advanced Intelligent Mechatronics (Aim 2003), Vols 1 and 2, pp. 107983.
Kawashima, S., Nakatani, M., An algorithm for estimating chlorophyll content in leaves using a video camera. Ann. Bot. 81 (1998), 49–54.
Kross, A., McNairn, H., Lapen, D., Sunohara, M., Champagne, C., Assessment of RapidEye vegetation indices for estimation of leaf area index and biomass in corn and soybean crops. Int. J. Appl. Earth Obs. Geoinf. 34 (2015), 235–248.
Liu, X.J., Cao, Q., Yuan, Z.F., Liu, X., Wang, X.L., Tian, Y.C., Cao, W.X., Zhu, Y., Leaf area index based nitrogen diagnosis in irrigated lowland rice. J. Integr. Agric. 17 (2018), 111–121.
Liu, Z.J., Guo, P.J., Liu, H., Fan, P., Zeng, P.Z., Liu, X.Y., Feng, C., Wang, W., Yang, F.Z., Gradient boosting estimation of the leaf area index of apple orchards in UAV remote sensing. Remote Sens. (Basel), 13, 2021, 3263.
Liu, S.B., Jin, X.L., Nie, C.W., Wang, S.Y., Yu, X., Cheng, M.H., Shao, M.C., Wang, Z.X., Tuohuti, N., Bai, Y., Liu, Y.D., Estimating leaf area index using unmanned aerial vehicle data: Shallow vs. deep machine learning algorithms. Plant Physiol. 187 (2021), 1551–1576.
Louhaichi, M., Borman, M.M., Johnson, D.E., Spatially located platform and aerial photography for documentation of grazing impacts on wheat. Geocarto Int. 16 (2001), 65–70.
Luo, P.L., Liao, J.J., Shen, G.Z., Combining spectral and texture features for estimating leaf area index and biomass of maize using sentinel-1/2, and landsat-8 data. IEEE Access 8 (2020), 53614–53626.
Wenhua Mao, Yiming Wang, and Yueqing Wang, 2003. Real-time detection of between-row weeds using machine vision. In: ASAE Annual International Meeting, 1. Las Vegas, Nevada, USA: American Society of Agricultural and Biological Engineers.
Osco, L.P., Marcato, J., Ramos, A.P.M., Jorge, L.A.D., Fatholahi, S.N., Silva, J.D., Matsubara, E.T., Pistori, H., Goncalves, W.N., Li, J., A review on deep learning in UAV remote sensing. Int. J. Appl. Earth Obs. Geoinf., 102, 2021, 102456.
Pandey, A., Jain, K., An intelligent system for crop identification and classification from UAV images using conjugated dense convolutional neural network. Comput. Electron. Agric., 192, 2022, 106543.
Patil, P.B., Biradar, P., Bhagawathi, A.U., Hejjegar, I., A review on leaf area index of horticulture crops and its importance. Int. J. Curr. Microbiol. App. Sci. 7 (2018), 505–513.
Poblete-Echeverria, C., Fuentes, S., Ortega-Farias, S., Gonzalez-Talice, J., Yuri, J.A., Digital cover photography for estimating leaf area index (LAI) in apple trees using a variable light extinction coefficient. Sensors 15 (2015), 2860–2872.
Raj, R., Walker, J.P., Pingale, R., Nandan, R., Naik, B., Jagarlapudi, A., Leaf area index estimation using top-of-canopy airborne RGB images. Int. J. Appl. Earth Obs. Geoinf., 96, 2021, 102282.
Rasmussen, J., Ntakos, G., Nielsen, J., Svensgaard, J., Poulsen, R.N., Christensen, S., Are vegetation indices derived from consumer-grade cameras mounted on UAVs sufficiently reliable for assessing experimental plots?. Eur. J. Agron. 74 (2016), 75–92.
Saberioon, M.M., Amin, M.S.M., Anuar, A.R., Gholizadeh, A., Wayayok, A., Khairunniza-Bejo, S., Assessment of rice leaf chlorophyll content using visible bands at different growth stages at both the leaf and canopy scale. Int. J. Appl. Earth Obs. Geoinf. 32 (2014), 35–45.
Sagan, V., Maimaitijiang, M., Bhadra, S., Maimaitiyiming, M., Brown, D.R., Sidike, P., Fritschi, F.B., Field-scale crop yield prediction using multi-temporal WorldView-3 and PlanetScope satellite data and deep learning. ISPRS J. Photogramm. Remote Sens. 174 (2021), 265–281.
Takahashi, K., Optimum leaf-area index in delaware grape vines. J. Japanese Soc. Horticult. Sci. 54 (1985), 293–300.
Tongson, E.J., Fuentes, S., Carrasco-Benavides, M., Mora, M., Canopy architecture assessment of cherry trees by cover photography based on variable light extinction coefficient modelled using artificial neural networks. Acta Hortic. 1235 (2019), 183–188.
Tucker, C.J., Red and photographic infrared linear combinations for monitoring vegetation. Remote Sens. Environ. 8 (1979), 127–150.
Watson, D.J., Comparative physiological studies on the growth of field crops: I. variation in net assimilation rate and leaf area between species and varieties, and within and between years. Ann. Bot. 11 (1947), 41–76.
Welles, J.M., Some indirect methods of estimating canopy structure. Remote Sens. Rev. 5 (1990), 31–43.
Wittstruck, L., Jarmer, T., Trautz, D., Waske, B., Estimating LAI from winter wheat using UAV data and CNNs. IEEE Geosci. Remote Sens. Lett. 19 (2022), 1–5.
Woebbecke, D.M., Meyer, G.E., Vonbargen, K., Mortensen, D.A., color indexes for weed identification under various soil, residue, and lighting conditions. Transact. Asae 38 (1995), 259–269.
Xiao, Z.Q., Liang, S.L., Wang, J.D., Chen, P., Yin, X.J., Zhang, L.Q., Song, J.L., Use of general regression neural networks for generating the GLASS leaf area index product from time-series MODIS surface reflectance. IEEE Trans. Geosci. Remote Sens. 52 (2014), 209–223.
Xu, Y.Y., Zhou, Y., Sekula, P., Ding, L.Y., Machine learning in construction: From shallow to deep learning. Developments in the Built Environment, 6, 2021, 100045.
Yamaguchi, T., Tanaka, Y., Imachi, Y., Yamashita, M., Katsura, K., Feasibility of combining deep learning and RGB images obtained by unmanned aerial vehicle for leaf area index estimation in rice. Remote Sens. (Basel), 13, 2021, 84.
Yang, K.L., Gong, Y., Fang, S.H., Duan, B., Yuan, N.G., Peng, Y., Wu, X.T., Zhu, R.S., Combining spectral and texture features of UAV images for the remote estimation of rice LAI throughout the entire growing season. Remote Sens. (Basel), 13, 2021, 3001.
Yin, X.Y., Lantinga, E.A., Schapendonk, A.H.C.M., Zhong, X.H., Some quantitative relationships between leaf area index and canopy nitrogen content and distribution. Ann. Bot. 91 (2003), 893–903.
Yun, S., Han, D., Chun, S., Oh, S.J., Yoo, Y., and Choe, J., 2019. CutMix: Regularization strategy to train strong classifiers with localizable features. In: 2019 IEEE/CVF International Conference on Computer Vision (ICCV), pp. 6022–31.
Zhang, J.J., Cheng, T., Guo, W., Xu, X., Qiao, H.B., Xie, Y.M., Ma, X.M., Leaf area index estimation model for UAV image hyperspectral data based on wavelength variable selection and machine learning methods. Plant Methods, 17, 2021, 49.
Hongyi Zhang, Moustapha Cissé, Yann Dauphin, and David Lopez-Paz, 2018. 'mixup: Beyond Empirical Risk Minimization', ArXiv/1710.09412.
Zhang, X.H., Zeraatpisheh, M., Rahman, M.M., Wang, S.J., Xu, M., Texture is important in improving the accuracy of mapping photovoltaic power plants: A case study of ningxia autonomous region, China. Remote Sens. (Basel), 13, 2021, 3909.
Zhong, Z., Zheng, L., Kang, G., Li, S., and Yang, Y., 2020. Random Erasing Data Augmentation. In: 34th AAAI Conference on Artificial Intelligence, pp. 13001–08. New York: Assoc advancement artificial intelligence.
Zhou, X., Zheng, H.B., Xu, X.Q., He, J.Y., Ge, X.K., Yao, X., Cheng, T., Zhu, Y., Cao, W.X., Tian, Y.C., Predicting grain yield in rice using multi-temporal vegetation indices from UAV-based multispectral and digital imagery. ISPRS J. Photogramm. Remote Sens. 130 (2017), 246–255.