Azpiroz, R., Butow, R.A., Patterns of mitochondrial sorting in yeast zygotes (1993) Mol. Biol. Cell, 4, pp. 21-36
Bennoun, P., Delosme, M., Kuck, U., Mitochondrial genetics of Chlamydomonas reinhardtii: Resistance mutations marking the cytochrome b gene (1991) Genetics, 127, pp. 335-343
Bonnefoy, N., Fox, T.D., In vivo analysis of mutated initiation codons in the mitochondrial COX2 gene of Saccharomyces cerevisiae fused to the reporter gene ARG8m reveals lack of downstream reinitiation (2000) Mol. Gen. Genet., 262, pp. 1036-1046
Bonnefoy, N., Bsat, N., Fox, T.D., Mitochondrial translation of Saccharomyces cerevisiae COX2 mRNA is controlled by the nucleotide sequence specifying the pre-Cox2p leader peptide (2001) Mol. Cell. Biol., 21, pp. 2359-2372
Boulanger, S.C., Belcher, S.M., Schmidt, U., Dib-Hajj, S.D., Schmidt, T., Perlman, P.S., Studies of point mutants define three essential paired nucleotides in the domain 5 substructure of a group II intron (1995) Mol. Cell. Biol., 15, pp. 4479-4488
Boynton, J.E., Gillham, N.W., Genetics and transformation of mitochondria in the green alga Chlamydomonas (1996) Meth. Enzymol., 264, pp. 279-296
Broadley, S.A., Demlow, C.M., Fox, T.D., Peripheral mitochondrial inner membrane protein, Mss2p, required for export of the mitochondrially coded Cox2p C tail in Saccharomyces cerevisiae (2001) Mol. Cell. Biol., 21, pp. 7663-7672
Butow, R.A., Henke, M., Moran, J.V., Belcher, S.M., Perlman, P.S., Transformation of Saccharomyces cerevisiae mitochondria by the biolistic gun (1996) Meth. Enzymol., 264, pp. 265-278
Chen, X.J., Butow, R.A., The organization and inheritance of the mitochondrial genome (2005) Nat. Rev. Genet., 6, pp. 815-825
Cohen, J.S., Fox, T.D., Expression of green fluorescent protein from a recoded gene inserted into Saccharomyces cerevisiae mitochondrial DNA (2001) Mitochondrion, 1, pp. 181-189
Conde, J., Fink, G.R., A mutant of S. cerevisiae defective for nuclear fusion (1976) Proc. Natl. Acad. Sci. USA, 73, pp. 3651-3655
Costanzo, M.C., Fox, T.D., Suppression of a defect in the 5′-untranslated leader of the mitochondrial COX3 mRNA by a mutation affecting an mRNA-specific translational activator protein (1993) Mol. Cell. Biol., 13, pp. 4806-4813
de Zamaroczy, M., Faugeron-Fonty, G., Baldacci, G., Goursot, R., Bernardi, G., The ori sequences of the mitochondrial genome of a wild-type yeast strain: Number, location, orientation and structure (1984) Gene, 32, pp. 439-457
Demlow, C.M., Fox, T.D., Activity of mitochondrially synthesized reporter proteins is lower than that of imported proteins and is increased by lowering cAMP in glucose-grown Saccharomyces cerevisiae cells (2003) Genetics, 165, pp. 961-974
di Rago, J.P., Perea, X., Colson, A.M., DNA sequence analysis of diuron-resistant mutations in the mitochondrial cytochrome b gene of Saccharomyces cerevisiae (1986) FEBS Lett., 208, pp. 208-210
Dorthu, M.P., Remy, S., Michel-Wolwertz, M.R., Colleaux, L., Breyer, D., Beckers, M.C., Englebert, S., Matagne, R.F., Biochemical, genetic and molecular characterization of new respiratory-deficient mutants in Chlamydomonas reinhardtii (1992) Plant Mol. Biol., 18, pp. 759-772
Dujon, B., Sequence of the intron and flanking exons of the mitochondrial 21S rRNA gene of yeast strains having different alleles at the omega and rib-1 loci (1980) Cell, 20, pp. 185-197
Dujon, B., Mitochondrial genetics and functions (1981) "The Molecular Biology of the Yeast Saccharomyces, Life Cycle and Inheritance", pp. 505-635. , Strathern J.N., Jones E.W., and Broach J.R. (Eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
Duvezin-Caubet, S., Rak, M., Lefebvre-Legendre, L., Tetaud, E., Bonnefoy, N., di Rago, J.P., A 'petite-obligate' mutant of Saccharomyces cerevisiae: Functional mtDNA is lethal in cells lacking the delta subunit of mitochondrial F1-ATPase (2006) J. Biol. Chem., 281, pp. 16305-16313
Fiori, A., Perez-Martinez, X., Fox, T.D., Overexpression of the COX2 translational activator, Pet111p, prevents translation of COX1 mRNA and cytochrome c oxidase assembly in mitochondria of Saccharomyces cerevisiae (2005) Mol. Microbiol., 56, pp. 1689-1704
Folley, L.S., Fox, T.D., Site-directed mutagenesis of a Saccharomyces cerevisiae mitochondrial translation initiation codon (1991) Genetics, 129, pp. 659-668
Fox, T.D., Natural variation in the genetic code (1987) Annu. Rev. Genet., 21, pp. 67-91
Fox, T.D., Folley, L.S., Mulero, J.J., McMullin, T.W., Thorsness, P.E., Hedin, L.O., Costanzo, M.C., Analysis and manipulation of yeast mitochondrial genes (1991) Meth. Enzymol., 194, pp. 149-165
Fox, T.D., Sanford, J.C., McMullin, T.W., Plasmids can stably transform yeast mitochondria lacking endogenous mtDNA (1988) Proc. Natl. Acad. Sci. USA, 85, pp. 7288-7292
Golik, P., Bonnefoy, N., Szczepanek, T., Saint-Georges, Y., Lazowska, J., The Rieske FeS protein encoded and synthesized within mitochondria complements a deficiency in the nuclear gene (2003) Proc. Natl. Acad. Sci. USA, 100, pp. 8844-8849
Green-Willms, N.S., Butler, C.A., Dunstan, H.M., Fox, T.D., Pet111p, an inner membrane-bound translational activator that limits expression of the Saccharomyces cerevisiae mitochondrial gene COX2 (2001) J. Biol. Chem., 276, pp. 6392-6397
(2002) "Methods in enzymology,", 350-351. , Guthrie C., and Fink G.R. (Eds), Academic Press, San diego
Hanson, M.R., Folkerts, O., Structure and function of the higher plant mitochondrial genome (1992) Int. Rev. Cytol., 141, pp. 129-172
Harris, E.H., (1989) "The Chlamydomonas Sourcebook.", , Academic Press, San Diego
He, S., Fox, T.D., Membrane translocation of mitochondrially coded Cox2p: Distinct requirements for export of amino- and carboxy-termini, and dependence on the conserved protein Oxa1p (1997) Mol. Biol. Cell, 8, pp. 1449-1460
He, S., Fox, T.D., Mutations affecting a yeast mitochondrial inner membrane protein, Pnt1p, block export of a mitochondrially synthesized fusion protein from the matrix (1999) Mol. Cell. Biol., 19, pp. 6598-6607
Henke, R.M., Butow, R.A., Perlman, P.S., Maturase and endonuclease functions depend on separate conserved domains of the bifunctional protein encoded by the group I intron aI4 alpha of yeast mitochondrial DNA (1995) EMBO J., 14, pp. 5094-5099
Hill, J.E., Myers, A.M., Koerner, T.J., Tzagoloff, A., Yeast/E. coli shuttle vectors with multiple unique restriction sites (1986) Yeast, 2, pp. 163-167
Hinnen, A., Hicks, J.B., Fink, G.R., Transformation of yeast (1978) Proc. Natl. Acad. Sci. USA, 75, pp. 1929-1933
Johnston, S.A., Anziano, P.Q., Shark, K., Sanford, J.C., Butow, R.A., Mitochondrial transformation in yeast by bombardment with microprojectiles (1988) Science, 240, pp. 1538-1541
Lewin, A.S., Morimoto, R., Rabinowitz, M., Stable heterogeneity of mitochondrial DNA in grande and petite strains of S. cerevisiae (1979) Plasmid, 2, pp. 474-484
Li, M., Tzagoloff, A., Underbrink-Lyon, K., Martin, N.C., Identification of the paromomycin-resistance mutation in the 15S rRNA gene of yeast mitochondria (1982) J. Biol. Chem., 257, pp. 5921-5928
Meeusen, S., Nunnari, J., Evidence for a two membrane-spanning autonomous mitochondrial DNA replisome (2003) J. Cell Biol., 163, pp. 503-510
Mireau, H., Arnal, N., Fox, T.D., Expression of Barstar as a selectable marker in yeast mitochondria (2003) Mol. Genet. Genomics, 270, pp. 1-8
Mittelmeier, T.M., Dieckmann, C.L., In vivo analysis of sequences necessary for CBP1-dependent accumulation of cytochrome b transcripts in yeast mitochondria (1993) Mol. Cell. Biol., 13, pp. 4203-4213
Mulero, J.J., Fox, T.D., Reduced but accurate translation from a mutant AUA initiation codon in the mitochondrial COX2 mRNA of Saccharomyces cerevisiae (1994) Mol. Gen. Genet., 242, pp. 383-390
Müller, P.P., Fox, T.D., Molecular cloning and genetic mapping of the PET494 gene of Saccharomyces cerevisiae (1984) Mol. Gen. Genet., 195, pp. 275-280
Myers, A.M., Pape, L.K., Tzagoloff, A., Mitochondrial protein synthesis is required for maintenance of intact mitochondrial genomes in Saccharomyces cerevisiae (1985) EMBO J., 4, pp. 2087-2092
Neff, N.F., Thomas, J.H., Grisafi, P., Botstein, D., Isolation of the b-tubulin gene from yeast and demonstration of its essential function in vivo (1983) Cell, 33, pp. 211-219
Nunnari, J., Marshall, W.F., Straight, A., Murray, A., Sedat, J.W., Walter, P., Mitochondrial transmission during mating in Saccharomyces cerevisiae is determined by mitochondrial fusion and fission and the intramitochondrial segregation of mitochondrial DNA (1997) Mol. Biol. Cell, 8, pp. 1233-1242
Ooi, B.G., Novitski, C.E., Nagley, P., DNA sequence analysis of the oli1 gene reveals amino acid changes in mitochondrial ATPase subunit 9 from oligomycin-resistant mutants of Saccharomyces cerevisiae (1985) Eur. J. Biochem., 152, pp. 709-714
Perez-Martinez, X., Broadley, S.A., Fox, T.D., Mss51p promotes mitochondrial Cox1p synthesis and interacts with newly synthesized Cox1p (2003) EMBO J., 22, pp. 5951-5961
Perlman, P.S., Birky Jr., C.W., Strausberg, R.L., Segregation of mitochondrial markers in yeast (1979) Meth. Enzymol., 56, pp. 139-154
Pon, L., Schatz, G., Biogenesis of yeast mitochondria (1991) "The Molecular and Cellular Biology of the Yeast Saccharomyces: Genome Dynamics, Protein Synthesis and Energetics", 1, pp. 333-406. , Broach J.R., Pringle J.R., and Jones E.W. (Eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor 3 vols
Remacle, C., Matagne, R., Mitochondrial genetics (1998) "The Molecular Biology of Chloroplasts and Mitochondria", pp. 661-674. , Rochaix J.D., Goldschmidt-Clermont M., and Merchant S. (Eds), Kluwer Academic Publishers, Dordrecht, The Netherlands
Remacle, C., Cardol, P., Coosemans, N., Gaisne, M., Bonnefoy, N., High-efficiency biolistic transformation of Chlamydomonas mitochondria can be used to insert mutations in complex I genes (2006) Proc. Natl. Acad. Sci. USA, 103, pp. 4771-4776
(1998) "The Molecular Biology of Chloroplasts and Mitochondria.", , Rochaix J.D., Goldschmidt-Clermont M., and Merchant S. (Eds), Kluwer Academic Publishers, Dordrecht, The Netherlands
Rothstein, R., Targeting, disruption, replacement and allele rescue: Integrative DNA transformation in yeast (1991) Meth. Enzymol., 194, pp. 281-301
Sanchirico, M.E., Fox, T.D., Mason, T.L., Accumulation of mitochondrially synthesized Saccharomyces cerevisiae Cox2p and Cox3p depends on targeting information in untranslated portions of their mRNAs (1998) EMBO J., 17, pp. 5796-5804
Saracco, S.A., Fox, T.D., Cox18p is required for export of the mitochondrially encoded Saccharomyces cerevisiae Cox2p C-tail and interacts with Pnt1p and Mss2p in the inner membrane (2002) Mol. Biol. Cell, 13, pp. 1122-1131
Schmitt, M.E., Clayton, D.A., Conserved features of yeast and mammalian mitochondrial DNA replication (1993) Curr. Opin. Genet. Dev., 3, pp. 769-774
Sebald, W., Wachter, E., Tzagoloff, A., Identification of amino acid substitutions in the dicyclohexylcarbodiimide-binding subunit of the mitochondrial ATPase complex from oligomycin-resistant mutants of Saccharomyces cerevisiae (1979) Eur. J. Biochem., 100, pp. 599-607
Sia, E.A., Butler, C.A., Dominska, M., Greenwell, P., Fox, T.D., Petes, T.D., Analysis of microsatellite mutations in the mitochondrial DNA of Saccharomyces cerevisiae (2000) Proc. Natl. Acad. Sci. USA, 97, pp. 250-255
Sor, F., Fukuhara, H., Identification of two erythromycin resistance mutations in the mitochondrial gene coding for the large ribosomal RNA in yeast (1982) Nucleic Acids Res., 10, pp. 6571-6577
Speno, H., Taheri, M.R., Sieburth, D., Martin, C.T., Identification of essential amino acids within the proposed CuA binding site in subunit II of cytochrome c oxidase (1995) J. Biol. Chem., 270, pp. 25363-25369
Steele, D.F., Butler, C.A., Fox, T.D., Expression of a recoded nuclear gene inserted into yeast mitochondrial DNA is limited by mRNA-specific translational activation (1996) Proc. Natl. Acad. Sci. USA, 93, pp. 5253-5257
Strand, M.K., Copeland, W.C., Measuring mtDNA mutation rates in Saccharomyces cerevisiae using the mtArg8 assay (2002) Methods Mol. Biol., 197, pp. 151-157
Strand, M.K., Stuart, G.R., Longley, M.J., Graziewicz, M.A., Dominick, O.C., Copeland, W.C., POS5 gene of Saccharomyces cerevisiae encodes a mitochondrial NADH kinase required for stability of mitochondrial DNA (2003) Eukaryot. Cell, 2, pp. 809-820
Sulo, P., Groom, K.R., Wise, C., Steffen, M., Martin, N., Successful transformation of yeast mitochondria with RPM1: An approach for in vivo studies of mitochondrial RNase P RNA structure, function and biosynthesis (1995) Nucleic Acids Res., 23, pp. 856-860
Szczepanek, T., Lazowska, J., Replacement of two non-adjacent amino acids in the S. cerevisiae bi2 intron-encoded RNA maturase is sufficient to gain a homing-endonuclease activity (1996) EMBO J., 15, pp. 3758-3767
Thomas, B.J., Rothstein, R., Elevated recombination rates in transcriptionally active DNA (1989) Cell, 56, pp. 619-630
Thorsness, P.E., Fox, T.D., Escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisiae (1990) Nature, 346, pp. 376-379
Thorsness, P.E., Fox, T.D., Nuclear mutations in Saccharomyces cerevisiae that affect the escape of DNA from mitochondria to the nucleus (1993) Genetics, 134, pp. 21-28
Towpik, J., Chacinska, A., Ciesla, M., Ginalski, K., Boguta, M., Mutations in the yeast MRF1 gene encoding mitochondrial release factor inhibit translation on mitochondrial ribosomes (2004) J. Biol. Chem., 279, pp. 14096-14103
Vahrenholz, C., Riemen, G., Pratje, E., Dujon, B., Michaelis, G., Mitochondrial DNA of Chlamydomonas reinhardtii: The structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication (1993) Curr. Genet., 24, pp. 241-247
Wallace, D.C., Diseases of the mitochondrial DNA (1992) Annu. Rev. Biochem., 61, pp. 1175-1212
Williams, E.H., Bsat, N., Bonnefoy, N., Butler, C.A., Fox, T.D., Alteration of a novel dispensable mitochondrial ribosomal small-subunit protein, Rsm28p, allows translation of defective COX2 mRNAs (2005) Eukaryot. Cell, 4, pp. 337-345
Yamasaki, T., Kurokawa, S., Watanabe, K.I., Ikuta, K., Ohama, T., Shared molecular characteristics of successfully transformed mitochondrial genomes in Chlamydomonas reinhardtii (2005) Plant Mol. Biol., 58, pp. 515-527
Zinn, A.R., Pohlman, J.K., Perlman, P.S., Butow, R.A., Kinetic and segregational analysis of mitochondrial DNA recombination in yeast (1987) Plasmid, 17, pp. 248-256
