[en] Rapid and specific detection of pathogenic bacteria in fecal samples is of critical importance for the diagnosis of neonatal diarrhea in veterinary clinics. Nanobodies are a promising tool for the treatment and diagnosis of infectious diseases due to their unique recognition properties. In this study, we report the design of a nanobody-based magnetofluorescent immunoassay for the sensitive detection of pathogenic Escherichia coli F17-positive strains (E. coli F17). For this, a camel was immunized with purified F17A protein from F17 fimbriae and a nanobody library was constructed by phage display. Two specific anti-F17A nanobodies (Nbs) were selected to design the bioassay. The first one (Nb1) was conjugated to magnetic beads (MBs) to form a complex capable of efficiently capturing the target bacteria. A second horseradish peroxidase (HRP)-conjugated nanobody (Nb4) was used for detection by oxidizing o-phenylenediamine (OPD) to fluorescent 2,3-diaminophenazine (DAP). Our results show that the immunoassay recognizes E. coli F17 with high specificity and sensitivity, with a detection limit of 1.8 CFU/mL in only 90 min. Furthermore, we showed that the immunoassay can be applied to fecal samples without pretreatment and remains stable for at least one month when stored at 4 °C.
Disciplines :
Microbiology
Author, co-author :
Dhehibi, Asma; Livestock and Wildlife Laboratory (LR16IRA04), Arid Lands Institute (I.R.A), University of Gabès, Médenine 4119, Tunisia
Allaoui, Abdelmounaaim; Laboratory of Microbiology, African Genome Centre, Mohammed VI Polytechnic University (UM6P), Lot 660-Hay Moulay Rachid, Ben Guerir 43150, Morocco
Raouafi, Amal; Sensors and Biosensors Group, Analytical Chemistry and Electrochemistry Lab (LR99ES15), University of Tunis El Manar, Tunis El Manar 2092, Tunisia
Terrak, Mohammed ; Université de Liège - ULiège > Département des sciences de la vie > Centre d'Ingénierie des Protéines (CIP)
Bouhaouala-Zahar, Balkiss ; Laboratory of Venoms and Theranostic Applications (LR20IPT01), Place Pasteur, BP74, Pasteur Institute of Tunis, University of Tunis El Manar, Tunis 1002, Tunisia
Hammadi, Mohamed; Livestock and Wildlife Laboratory (LR16IRA04), Arid Lands Institute (I.R.A), University of Gabès, Médenine 4119, Tunisia
Raouafi, Noureddine ; Sensors and Biosensors Group, Analytical Chemistry and Electrochemistry Lab (LR99ES15), University of Tunis El Manar, Tunis El Manar 2092, Tunisia
Salhi, Imed ; Livestock and Wildlife Laboratory (LR16IRA04), Arid Lands Institute (I.R.A), University of Gabès, Médenine 4119, Tunisia
Language :
English
Title :
Nanobody-Based Sandwich Immunoassay for Pathogenic Escherichia coli F17 Strain Detection.
MHESR - Ministry of Higher Education and Scientific Research
Funding text :
This work was supported by PRF program of The Tunisian Ministry of Higher Education and Scientific Research (NanofastResponse, grant ref.: PRF2017D4P1).
Yu D. Banting G. Neumann N.F. A review of the taxonomy, genetics, and biology of the genus Escherichia and the type species Escherichia coli Can. J. Microbiol. 2021 67 553 571 10.1139/cjm-2020-0508 33789061
Tenaillon O. Skurnik D. Picard B. Denamur E. The population genetics of commensal Escherichia coli Nat. Rev. Microbiol. 2010 8 207 217 10.1038/nrmicro2298 20157339
Sarowska J. Futoma-Koloch B. Jama-Kmiecik A. Frej-Madrzak M. Ksiazczyk M. Bugla-Ploskonska G. Choroszy-Krol I. Virulence factors, prevalence and potential transmission of extraintestinal pathogenic Escherichia coli isolated from different sources: Recent reports Gut Pathog. 2019 11 10 10.1186/s13099-019-0290-0 30828388
Bessalah S. Fairbrother J.M. Salhi I. Vanier G. Khorchani T. Seddik M.M. Hammadi M. Antimicrobial resistance and molecular characterization of virulence genes, phylogenetic groups of Escherichia coli isolated from diarrheic and healthy camel-calves in Tunisia Comp. Immunol. Microbiol. Infect. Dis. 2016 49 1 7 10.1016/j.cimid.2016.08.008
Siuce J. Maturrano L. Wheeler J.C. Rosadio R. Diarrheagenic Escherichia coli isolates from neonatal alpacas mainly display F17 fimbriae adhesion gene Trop. Anim. Health Prod. 2020 52 3917 3921 10.1007/s11250-020-02415-2
Stordeur P. Marlier D. Blanco J. Oswald E. Biet F. Dho-Moulin M. Mainil J. Examination of Escherichia coli from poultry for selected adhesin genes important in disease caused by mammalian pathogenic E. coli Vet. Microbiol. 2002 84 231 241 10.1016/S0378-1135(01)00464-3
Van Duijkeren E. van Asten A.J.A.M. Gaastra W. Characterization of Escherichia coli isolated from adult horses with and without enteritis Vet. Q. 2000 22 162 166 10.1080/01652176.2000.9695048
Huang Y. Su Z. Li W. Ren J. Recent Progresses on Biosensors for Escherichia coli Detection Food Anal. Methods 2021 15 338 366 10.1007/s12161-021-02129-7
Cesewski E. Johnson B.N. Electrochemical biosensors for pathogen detection Biosens. Bioelectron. 2020 159 112214 10.1016/j.bios.2020.112214
Salhi I. Rabti A. Dhehibi A. Raouafi N. Sandwich-Based Immunosensor for Dual-Mode Detection of Pathogenic F17-Positive Escherichia coli Strains Int. J. Mol. Sci. 2022 23 6028 10.3390/ijms23116028
Patris S. Vandeput M. Kauffmann J.-M. Antibodies as target for affinity biosensors TrAC Trends Anal. Chem. 2016 79 239 246 10.1016/j.trac.2015.12.005
Arbabi Ghahroudi M. Desmyter A. Wyns L. Hamers R. Muyldermans S. Selection and identification of single domain antibody fragments from camel heavy-chain antibodies FEBS Lett. 1997 414 521 526 10.1016/S0014-5793(97)01062-4
De Vlieger D. Ballegeer M. Rossey I. Schepens B. Saelens X. Single-Domain Antibodies and Their Formatting to Combat Viral Infections Antibodies 2018 8 1 10.3390/antib8010001
Bastos-Soares E.A. Sousa R.M.O. Gómez A.F. Alfonso J. Kayano A.M. Zanchi F.B. Funes-Huacca M.E. Stábeli R.G. Soares A.M. Pereira S.S. et al. Single domain antibodies in the development of immunosensors for diagnostics Int. J. Biol. Macromol. 2020 165 2244 2252 10.1016/j.ijbiomac.2020.10.031
Liu X. Wang D. Chu J. Xu Y. Wang W. Sandwich pair nanobodies, a potential tool for electrochemical immunosensing serum prostate-specific antigen with preferable specificity J. Pharm. Biomed. Anal. 2018 158 361 369 10.1016/j.jpba.2018.06.021
El-Moghazy A.Y. Huo J. Amaly N. Vasylieva N. Hammock B.D. Sun G. An Innovative Nanobody-Based Electrochemical Immunosensor Using Decorated Nylon Nanofibers for Point-of-Care Monitoring of Human Exposure to Pyrethroid Insecticides ACS Appl. Mater. Interfaces 2020 12 6159 6168 10.1021/acsami.9b16193 31927905
Morales-Yánez F. Trashin S. Hermy M. Sariego I. Polman K. Muyldermans S. De Wael K. Fast One-Step Ultrasensitive Detection of Toxocara canis Antigens by a Nanobody-Based Electrochemical Magnetosensor Anal. Chem. 2019 91 11582 11588 10.1021/acs.analchem.9b01687 31429269
Zhu Z. Shi L. Feng H. Zhou H.S. Single domain antibody coated gold nanoparticles as enhancer for Clostridium difficile toxin detection by electrochemical impedance immunosensors Bioelectrochemistry 2015 101 153 158 10.1016/j.bioelechem.2014.10.003 25460611
Baral T.N. MacKenzie R. Arbabi Ghahroudi M. Single-Domain Antibodies and Their Utility Curr. Protoc. Immunol. 2013 103 2 17 10.1002/0471142735.im0217s103 24510545
Pardon E. Laeremans T. Triest S. Rasmussen S.G.F. Wohlkönig A. Ruf A. Muyldermans S. Hol W.G.J. Kobilka B.K. Steyaert J. A general protocol for the generation of Nanobodies for structural biology Nat. Protoc. 2014 9 674 693 10.1038/nprot.2014.039 24577359
Bessalah S. Fairbrother J.M. Salhi I. Vanier G. Khorchani T. Seddik M.-M. Hammadi M. Characterization and antimicrobial susceptibility of Escherichia coli isolated from healthy farm animals in Tunisia Anim. Biotechnol. 2020 32 748 757 10.1080/10495398.2020.1752702 32293994
Campuzano S. Salema V. Moreno-Guzmán M. Gamella M. Yáñez-Sedeño P. Fernández L.A. Pingarrón J.M. Disposable amperometric magnetoimmunosensors using nanobodies as biorecognition element. Determination of fibrinogen in plasma Biosens. Bioelectron. 2014 52 255 260 10.1016/j.bios.2013.08.055 24060974
Zayani R. Rezig D. Fares W. Marrakchi M. Essafi M. Raouafi N. Multiplexed Magnetofluorescent Bioplatform for the Sensitive Detection of SARS-CoV-2 Viral RNA without Nucleic Acid Amplification Anal. Chem. 2021 93 11225 11232 10.1021/acs.analchem.1c01950 34338520
Hu Y. Sun Y. Gu J. Yang F. Wu S. Zhang C. Ji X. Lv H. Muyldermans S. Wang S. Selection of specific nanobodies to develop an immuno-assay detecting Staphylococcus aureus in milk Food Chem. 2021 353 129481 10.1016/j.foodchem.2021.129481 33725546
Ji Y. Chen L. Wang Y. Zhang K. Wu H. Liu Y. Wang Y. Wang J. Development of a Double Nanobody-Based Sandwich Immunoassay for the Detecting Staphylococcal Enterotoxin C in Dairy Products Foods 2021 10 2426 10.3390/foods10102426
Ye L. Zhao G. Dou W. An electrochemical immunoassay for Escherichia coli O157:H7 using double functionalized Au@Pt/SiO2 nanocomposites and immune magnetic nanoparticles Talanta 2018 182 354 362 10.1016/j.talanta.2018.01.095
Kumar S. Guo Z. Singh R. Wang Q. Zhang B. Cheng S. Liu F.Z. Marques C. Kaushik B.K. Jha R. MoS2 Functionalized Multicore Fiber Probes for Selective Detection of Shigella Bacteria Based on Localized Plasmon J. Light. Technol. 2021 39 4069 4081 10.1109/JLT.2020.3036610
Zhang X. Shen J. Ma H. Jiang Y. Huang C. Han E. Yao B. He Y. Optimized dendrimer-encapsulated gold nanoparticles and enhanced carbon nanotube nanoprobes for amplified electrochemical immunoassay of E. coli in dairy product based on enzymatically induced deposition of polyaniline Biosens. Bioelectron. 2016 80 666 673 10.1016/j.bios.2016.02.043
Wilson D. Materón E.M. Ibáñez-Redín G. Faria R.C. Correa D.S. Oliveira O.N. Electrical detection of pathogenic bacteria in food samples using information visualization methods with a sensor based on magnetic nanoparticles functionalized with antimicrobial peptides Talanta 2019 194 611 618 10.1016/j.talanta.2018.10.089 30609580
Xu M. Wang R. Li Y. Rapid detection of Escherichia coli O157:H7 and Salmonella Typhimurium in foods using an electrochemical immunosensor based on screen-printed interdigitated microelectrode and immunomagnetic separation Talanta 2016 148 200 208 10.1016/j.talanta.2015.10.082 26653441
Ranjbar S. Nejad M.A.F. Parolo C. Shahrokhian S. Merkoçi A. Smart Chip for Visual Detection of Bacteria Using the Electrochromic Properties of Polyaniline Anal. Chem. 2019 91 14960 14966 10.1021/acs.analchem.9b03407 31682108
Luo K. Ryu J. Seol I.-H. Jeong K.-B. You S.-M. Kim Y.-R. Paper-Based Radial Chromatographic Immunoassay for the Detection of Pathogenic Bacteria in Milk ACS Appl. Mater. Interfaces 2019 11 46472 46478 10.1021/acsami.9b16075 31746586
Malvano F. Pilloton R. Albanese D. Sensitive Detection of Escherichia coli O157:H7 in Food Products by Impedimetric Immunosensors Sensors 2018 18 2168 10.3390/s18072168 29976909
Güner A. Çevik E. Şenel M. Alpsoy L. An electrochemical immunosensor for sensitive detection of Escherichia coli O157:H7 by using chitosan, MWCNT, polypyrrole with gold nanoparticles hybrid sensing platform Food Chem. 2017 229 358 365 10.1016/j.foodchem.2017.02.083
Sun X. Lei C. Guo L. Zhou Y. Separable detecting of Escherichia coli O157H:H7 by a giant magneto-resistance-based bio-sensing system Sens. Actuators B Chem. 2016 234 485 492 10.1016/j.snb.2016.04.183
Cimafonte M. Fulgione A. Gaglione R. Papaianni M. Capparelli R. Arciello A. Bolletti Censi S. Borriello G. Velotta R. Della Ventura B. Screen Printed Based Impedimetric Immunosensor for Rapid Detection of Escherichia coli in Drinking Water Sensors 2020 20 274 10.3390/s20010274