[en] BACKGROUND: Deoxyribonuclease 1 like 3 (DNASE1L3) is a secreted enzyme that has been shown to digest the extracellular chromatin derived from apoptotic bodies, and DNASE1L3 pathogenic variants have been associated with a lupus phenotype. It is unclear whether interferon signaling is sustained in DNASE1L3 deficiency in humans. OBJECTIVES: To explore interferon signaling in DNASE1L3 deficient patients. To depict the characteristic features of DNASE1L3 deficiencies in human. METHODS: We identified, characterized, and analyzed five new patients carrying biallelic DNASE1L3 variations. Whole or targeted exome and/or Sanger sequencing was performed to detect pathogenic variations in five juvenile systemic erythematosus lupus (jSLE) patients. We measured interferon-stimulated gene (ISG) expression in all patients. We performed a systematic review of all published cases available from its first description in 2011 to March 24(th) 2022. RESULTS: We identified five new patients carrying biallelic DNASE1L3 pathogenic variations, including three previously unreported mutations. Contrary to canonical type I interferonopathies, we noticed a transient increase of ISGs in blood, which returned to normal with disease remission. Disease in one patient was characterized by lupus nephritis and skin lesions, while four others exhibited hypocomplementemic urticarial vasculitis syndrome. The fourth patient presented also with early-onset inflammatory bowel disease. Reviewing previous reports, we identified 35 additional patients with DNASE1L3 deficiency which was associated with a significant risk of lupus nephritis and a poor outcome together with the presence of anti-neutrophil cytoplasmic antibodies (ANCA). Lung lesions were reported in 6/35 patients. CONCLUSIONS: DNASE1L3 deficiencies are associated with a broad phenotype including frequently lupus nephritis and hypocomplementemic urticarial vasculitis with positive ANCA and rarely, alveolar hemorrhages and inflammatory bowel disease. This report shows that interferon production is transient contrary to anomalies of intracellular DNA sensing and signaling observed in Aicardi-Goutières syndrome or STING-associated vasculitis in infancy (SAVI).
Disciplines :
Immunology & infectious disease Pediatrics
Author, co-author :
Tusseau, Maud; The International Center of Research in Infectiology, Lyon University, INSERM ; Genetics Department, Lyon University Hospital, Lyon, France.
Lovšin, Ema; University Children's Hospital University Medical Center Ljubljana, Ljubljana,
Samaille, Charlotte; Nephrologie Pediatrique, Hôpital Jeanne de Flandre, CHU Lille, Lille, France.
Pescarmona, Rémi; The International Center of Research in Infectiology, Lyon University, INSERM ; Immunology Laboratory, Hospices Civils de Lyon, Lyon Sud Hospital, Pierre Benite,
Mathieu, Anne-Laure; The International Center of Research in Infectiology, Lyon University, INSERM
Maggio, Maria-Cristina; University Department PROMISE "G. D'Alessandro", University of Palermo, Palermo,
Selmanović, Velma; Children's Hospital, University Clinical Center , Sarajevo, Bosnia and
Debeljak, Marusa; University Children's Hospital University Medical Center Ljubljana, Ljubljana,
Dachy, Angélique ; Centre Hospitalier Universitaire de Liège - CHU > > Service de pédiatrie ; Nephrologie Pediatrique, Hôpital Jeanne de Flandre, CHU Lille, Lille, France.
Novljan, Gregor; Pediatric Nephrology Department, Children's Hospital, University Medical Centre
Janin, Alexandre; Cardiogenetics Laboratory, Biochemistry and Molecular Biology Department, Lyon ; NeuroMyoGene Institute, Lyon 1 University, CNRS UMR 5510, INSERM U1217, Lyon,
Januel, Louis; NeuroMyoGene Institute, Lyon 1 University, CNRS UMR 5510, INSERM U1217, Lyon,
Gibier, Jean-Baptiste; University Lille, UMR9020-U1277 - CANTHER - Cancer Heterogeneity Plasticity and
Chopin, Emilie; Centre de Biotechnologie Cellulaire Et Biothèque, Hospices Civils de Lyon, Bron,
Rouvet, Isabelle; Centre de Biotechnologie Cellulaire Et Biothèque, Hospices Civils de Lyon, Bron,
Goncalves, David; Immunology Laboratory, Hospices Civils de Lyon, Lyon Sud Hospital, Pierre Benite,
Fabien, Nicole; Immunology Laboratory, Hospices Civils de Lyon, Lyon Sud Hospital, Pierre Benite,
Rice, Gillian I; Division of Evolution and Genomic Sciences, School of Biological Sciences,
Lesca, Gaétan; Genetics Department, Lyon University Hospital, Lyon, France.
Labalme, Audrey; Genetics Department, Lyon University Hospital, Lyon, France.
Romagnani, Paola; Nephrology Unit, Anna Meyer Children Hospital and University of Florence,
Walzer, Thierry; The International Center of Research in Infectiology, Lyon University, INSERM
Viel, Sebastien; The International Center of Research in Infectiology, Lyon University, INSERM ; Immunology Laboratory, Hospices Civils de Lyon, Lyon Sud Hospital, Pierre Benite,
Perret, Magali; The International Center of Research in Infectiology, Lyon University, INSERM ; Immunology Laboratory, Hospices Civils de Lyon, Lyon Sud Hospital, Pierre Benite,
Crow, Yanick J; Laboratory of Neurogenetics and Neuroinflammation, Institut Imagine, Université ; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of
Avčin, Tadej; University Children's Hospital University Medical Center Ljubljana, Ljubljana,
Cimaz, Rolando; ASST G. Pini, Milan, Italy. ; Department of Clinical Sciences and Community Health, University of Milano,
Belot, Alexandre; The International Center of Research in Infectiology, Lyon University, INSERM ; National Referee Centre for Rheumatic and Autoimmune Diseases in Children, RAISE, ; Pediatric Nephrology, Rheumatology, Dermatology Department, Hôpital Femme Mère
Belot A, Rice GI, Omarjee SO, Rouchon Q, Smith EMD, Moreews M, et al. Contribution of rare and predicted pathogenic gene variants to childhood-onset lupus: a large, genetic panel analysis of British and French cohorts. Lancet Rheumatol [Internet]. 2020 [cited 2020 Jan 16];0. Available from: https://www.thelancet.com/journals/lanrhe/article/PIIS2665-9913(19)30142-0/abstract.
Belot A, Cimaz R. Monogenic forms of systemic lupus erythematosus: new insights into SLE pathogenesis. Pediatr Rheumatol Online J. 2012;10:21. DOI: 10.1186/1546-0096-10-21
Omarjee O, Picard C, Frachette C, Moreews M, Rieux-Laucat F, Soulas-Sprauel P, et al. Monogenic lupus: dissecting heterogeneity. Autoimmun Rev. 2019;18:102361. DOI: 10.1016/j.autrev.2019.102361
Briggs TA, Rice GI, Daly S, Urquhart J, Gornall H, Bader-Meunier B, et al. Tartrate-resistant acid phosphatase deficiency causes a bone dysplasia with autoimmunity and a type I interferon expression signature. Nat Genet. 2011;43:127–31. DOI: 10.1038/ng.748
An J, Briggs TA, Dumax-Vorzet A, Alarcón-Riquelme ME, Belot A, Beresford M, et al. Tartrate-resistant acid phosphatase deficiency in the predisposition to systemic lupus erythematosus. Arthritis Rheumatol Hoboken NJ. 2017;69:131–42. DOI: 10.1002/art.39810
Crow YJ. Lupus: how much “complexity” is really (just) genetic heterogeneity? Arthritis Rheum. 2011;63:3661–4. DOI: 10.1002/art.30603
Belot A, Kasher PR, Trotter EW, Foray A-P, Debaud A-L, Rice GI, et al. Protein kinase cδ deficiency causes mendelian systemic lupus erythematosus with B cell-defective apoptosis and hyperproliferation. Arthritis Rheum. 2013;65:2161–71. DOI: 10.1002/art.38008
Al-Mayouf SM, Sunker A, Abdwani R, Abrawi SA, Almurshedi F, Alhashmi N, et al. Loss-of-function variant in DNASE1L3 causes a familial form of systemic lupus erythematosus. Nat Genet. 2011;43:1186–8. DOI: 10.1038/ng.975
Özçakar ZB, Foster J, Diaz-Horta O, Kasapcopur O, Fan Y-S, Yalçınkaya F, et al. DNASE1L3 mutations in hypocomplementemic urticarial vasculitis syndrome. Arthritis Rheum. 2013;65:2183–9. DOI: 10.1002/art.38010
Carbonella A, Mancano G, Gremese E, Alkuraya FS, Patel N, Gurrieri F, et al. An autosomal recessive DNASE1L3-related autoimmune disease with unusual clinical presentation mimicking systemic lupus erythematosus. Lupus. 2017;26:768–72. DOI: 10.1177/0961203316676382
Batu ED, Koşukcu C, Taşkıran E, Sahin S, Akman S, Sözeri B, et al. Whole exome sequencing in early-onset systemic lupus erythematosus. J Rheumatol. 2018;45:1671–9. DOI: 10.3899/jrheum.171358
Bruschi M, Bonanni A, Petretto A, Vaglio A, Pratesi F, Santucci L, et al. Neutrophil extracellular traps (NETs) profiles in patients with incident SLE and lupus nephritis. J Rheumatol. 2020;47:377–86.
Ranalli M, Passarelli C, Messia V, Pardeo M, Sacco E, Insalaco A, et al. Fri0554 Dnase1l3 variant in hypocomplementemic urticarial vasculitis syndrome identifies a different clinical phenotype. Ann Rheum Dis. BMJ Publishing Group Ltd; 2019;78:972–3.
Yıldırım DG, Bakkaloğlu SA. Monogenic lupus caused by mutations in DNASE1L3: a rare cause of systemic lupus erythematosus in children. Scand J Immunol. 2022;e13162.
Kisla Ekinci RM, Balci S, Ozcan D, Atmis B, Bisgin A. Monogenic lupus due to DNASE1L3 deficiency in a pediatric patient with urticarial rash, hypocomplementemia, pulmonary hemorrhage, and immune-complex glomerulonephritis. Eur J Med Genet. 2021;64:104262. DOI: 10.1016/j.ejmg.2021.104262
Paç Kisaarslan A, Witzel M, Unal E, Rohlfs M, Akyildiz B, Dogan ME, et al. Refractory and fatal presentation of severe autoimmune hemolytic anemia in a child with the DNASE1L3 mutation complicated with an additional DOCK8 variant. J Pediatr Hematol Oncol. 2021;43:e452–6. DOI: 10.1097/MPH.0000000000001780
Tsokos GC, Lo MS, Costa Reis P, Sullivan KE. New insights into the immunopathogenesis of systemic lupus erythematosus. Nat Rev Rheumatol. 2016;12:716–30. DOI: 10.1038/nrrheum.2016.186
Bennett L, Palucka AK, Arce E, Cantrell V, Borvak J, Banchereau J, et al. Interferon and granulopoiesis signatures in systemic lupus erythematosus blood. J Exp Med. 2003;197:711–23. DOI: 10.1084/jem.20021553
Crow YJ. Type I interferonopathies: Mendelian type I interferon up-regulation. Curr Opin Immunol. 2015;32C:7–12. DOI: 10.1016/j.coi.2014.10.005
Lee-Kirsch MA. The type I interferonopathies. Annu Rev Med. 2017;68:297–315. DOI: 10.1146/annurev-med-050715-104506
Lin B, Goldbach-Mansky R. Pathogenic insights from genetic causes of autoinflammatory inflammasomopathies and interferonopathies. J Allergy Clin Immunol. 2022;149:819–32. DOI: 10.1016/j.jaci.2021.10.027
Aicardi J, Goutières F. Systemic lupus erythematosus or Aicardi-Goutières syndrome? Neuropediatrics. 2000;31:113. DOI: 10.1055/s-2000-7533
Rice GI, Forte GMA, Szynkiewicz M, Chase DS, Aeby A, Abdel-Hamid MS, et al. Assessment of interferon-related biomarkers in Aicardi-Goutières syndrome associated with mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, and ADAR: a case-control study. Lancet Neurol. 2013;12:1159–69. DOI: 10.1016/S1474-4422(13)70258-8
Sisirak V, Sally B, D’Agati V, Martinez-Ortiz W, Özçakar ZB, David J, et al. Digestion of chromatin in apoptotic cell microparticles prevents autoimmunity. Cell. 2016;166:88–101. DOI: 10.1016/j.cell.2016.05.034
Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med Off J Am Coll Med Genet. 2015;17:405–24.
Weill O, Decramer S, Malcus C, Kassai B, Rouvet I, Ginhoux T, et al. Familial and syndromic lupus share the same phenotype as other early-onset forms of lupus. Joint Bone Spine. 2017;84:589–93.
Galeazzi M, Morozzi G, Sebastiani GD, Bellisai F, Marcolongo R, Cervera R, et al. Anti-neutrophil cytoplasmic antibodies in 566 European patients with systemic lupus erythematosus: prevalence, clinical associations and correlation with other autoantibodies European Concerted Action on the Immunogenetics of SLE. Clin Exp Rheumatol. 1998;16:541–6.
Rice GI, Forte G, Szynkiewicz M, Chase DS, Aeby A, Abdel-Hamid MS, et al. Assessment of interferon-related biomarkers in Aicardi-Goutières syndrome associated with mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, and ADAR a case-control study. Lancet Neurol. 2013;12:1159–69. DOI: 10.1016/S1474-4422(13)70258-8
Rodero MP, Tesser A, Bartok E, Rice GI, Della Mina E, Depp M, et al. Type I interferon-mediated autoinflammation due to DNase II deficiency. Nat Commun. 2017;19;8:2176.
de Jesus AA, Hou Y, Brooks S, Malle L, Biancotto A, Huang Y, et al. Distinct interferon signatures and cytokine patterns define additional systemic autoinflammatory diseases. J Clin Invest. 2020;130:1669–82. DOI: 10.1172/JCI129301
Napirei M, Ludwig S, Mezrhab J, Klöckl T, Mannherz HG. Murine serum nucleases – contrasting effects of plasmin and heparin on the activities of DNase1 and DNase1-like 3 (DNase1l3). FEBS J. 2009;276:1059–73. DOI: 10.1111/j.1742-4658.2008.06849.x