Article (Scientific journals)
Development of new SNP and INDEL loci for the valuable African timber species Lophira alata
Blanc-Jolivet, C.; Mader, M.; Bouda, H.-N. et al.
2021In Conservation Genetics Resources, 13 (1), p. 85 - 87
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Keywords :
Azobe; Lophira alata; MassARRAY; Single nucleotide polymorphism
Abstract :
[en] The timber of the species Lophira alata (azobe) is very popular for outdoor constructions, which favours its overexploitation and illegal logging. We sampled individuals from Liberia, Ivory Coast, Ghana, Nigeria, Cameroon, Gabon, Congo Brazzaville and Republic Democratic of Congo to discover new nuclear and plastidial SNP and INDEL loci through restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. From an initial set of 397 loci, a final set of 126 loci was selected for timber tracking purposes. © 2020, The Author(s).
Disciplines :
Genetics & genetic processes
Author, co-author :
Blanc-Jolivet, C.;  Thünen Institute of Forest Genetics, Sieker Landstrasse 2, Grosshansdorf, 22927, Germany
Mader, M.;  Thünen Institute of Forest Genetics, Sieker Landstrasse 2, Grosshansdorf, 22927, Germany
Bouda, H.-N.;  Thünen Institute of Forest Genetics, Sieker Landstrasse 2, Grosshansdorf, 22927, Germany
Massot, M.;  INRAE, Univ. Bordeaux, BIOGECO, Cestas, 33610, France
Daïnou, Kasso  ;  Université de Liège - ULiège > Département GxABT > Gestion des ressources forestières et des milieux naturels
Yene, G.;  Biteng-Maetur, Behind Pi and Ju International College, Yaoundé, Cameroon
Opuni-Frimpong, E.;  University of Energy and Natural Resources, Sunyani, Ghana, CSIR-Forestry Research Institute of Ghana (FORIG), Kumasi, Ghana
Degen, B.;  Thünen Institute of Forest Genetics, Sieker Landstrasse 2, Grosshansdorf, 22927, Germany
Language :
English
Title :
Development of new SNP and INDEL loci for the valuable African timber species Lophira alata
Publication date :
2021
Journal title :
Conservation Genetics Resources
ISSN :
1877-7252
eISSN :
1877-7260
Publisher :
Springer Science and Business Media B.V.
Volume :
13
Issue :
1
Pages :
85 - 87
Peer reviewed :
Peer Reviewed verified by ORBi
Funding text :
This research was supported by the German Federal Ministry of Food and Agriculture in the frame of the ?Large scale project on genetic timber verification? (Project No. 28I-001-01). Genotyping was performed at the Genome Transcriptome Facility of Bordeaux (Grants from ANR-10-EQPX-16), with the help of Erwan Guichoux and Adline Delcamp. The CNIAF of republic of Congo, the MINFOF of Cameroon, the Tshopo provincial ministry in charge of environment, the Institut Sup?rieur des Etudes Agronomiques de Bengamisa (ISEA), the Institut Facult? des Sciences Agronomiques de Yangambi (IFA/Yangambi) of DRC, the Forestry Commission of Ghana, the SODEFOR of Cote d'Ivoire, the Liberia Forest Authority and the Nigeria Forest Service assisted the sampling activities. Laboratory work was conducted by Susanne Bein and Maike Paulini, Lennart Meyer-Sand and Birte Pakull organised sampling, sample preparation and documentation.
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