[en] Using a transient plant system, it was previously found that the suppression of Cucumber mosaic virus (CMV) 2b protein relies on its double-strand (ds) RNA binding capacity, but it is independent of its interaction with ARGONAUTE (AGO) proteins. Thus, the biological meaning of the 2b-AGO interaction in the context of virus infection remains elusive. In this study, we created infectious clones of CMV mutants that expressed the 2b functional domains of dsRNA or AGO binding and tested the effect of these CMV mutants on viral pathogenicity. We found that the mutant CMV2b(1-76) expressing the 2b dsRNA-binding domain exhibited the same virulence as wild-type CMV in infection with either wild-type Arabidopsis or rdr1/6 plants with RDR1- and RDR6-deficient mutations. However, remarkably reduced viral RNA levels and increased virus (v)siRNAs were detected in CMV2b(1-76)-infected Arabidopsis in comparison to CMV infection, which demonstrated that the 2b(1-76) deleted AGO-binding domain failed to suppress the RDR1/RDR6-dependent degradation of viral RNAs. The mutant CMV2b(8-111) expressing mutant 2b, in which the N-terminal 7 amino acid (aa) was deleted, exhibited slightly reduced virulence, but not viral RNA levels, in both wild-type and rdr1/6 plants, which indicated that 2b retained the AGO-binding activity acquired the counter-RDRs degradation of viral RNAs. The deletion of the N-terminal 7 aa of 2b affected virulence due to the reduced affinity for long dsRNA. The mutant CMV2b(18-111) expressing mutant 2b lacked the N-terminal 17 aa but retained its AGO-binding activity greatly reduced virulence and viral RNA level. Together with the instability of both 2b(18-111)-EGFP and RFP-AGO4 proteins when co-expressed in Nicotiana benthamiana leaves, our data demonstrates that the effect of 2b-AGO interaction on counter-RDRs antiviral defense required the presence of 2b dsRNA-binding activity. Taken together, our findings demonstrate that the dsRNA-binding activity of the 2b was essential for virulence, whereas the 2b-AGO interaction was necessary for interference with RDR1/6-dependent antiviral silencing in Arabidopsis.
Fang, Yuan-Yuan; State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences Beijing, China
Zhao, Jian-Hua; State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences Beijing, China
Liu, Shangwu ; State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of SciencesBeijing, China, Virus-free Seedling Research Institute, Heilongjiang Academy of Agricultural SciencesHarbin, China
Wang, Sheng; State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences Beijing, China
Duan, Cheng-Guo; State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences Beijing, China
Guo, Hui-Shan; State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of SciencesBeijing, China, College of Life Sciences, University of Chinese Academy of SciencesBeijing, China
Language :
English
Title :
CMV2b-AGO Interaction Is Required for the Suppression of RDR-Dependent Antiviral Silencing in Arabidopsis.
Publication date :
2016
Journal title :
Frontiers in Microbiology
eISSN :
1664-302X
Publisher :
Frontiers Media S.A., Switzerland
Volume :
7
Issue :
AUG
Pages :
1329
Peer reviewed :
Peer Reviewed verified by ORBi
Funders :
Ministry of Science and Technology of the People's Republic of China NSCF - National Natural Science Foundation of China
Funding text :
This study was supported by the Ministry of Science and Technology (2014CB138402) and the Natural Science Foundation of China (No.91519327)
Axtell, M. J., Jan, C., Rajagopalan, R., and Bartel, D. P. (2006). A two-hit trigger for siRNA biogenesis in plants. Cell 127, 565-577. doi: 10.1016/j.cell.2006.09.032
Chen, H.-Y., Yang, J., Lin, C., and Yuan, Y. A. (2008). Structural basis for RNA-silencing suppression by Tomato aspermy virus protein 2b. EMBO Rep. 9, 754-760. doi: 10.1038/embor.2008.118
Dalmay, T., Hamilton, A., Rudd, S., Angell, S., and Baulcombe, D. C. (2000). An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell 101, 543-553. doi: 10.1016/S0092-8674(00)80864-8
Diaz-Pendon, J. A., Li, F., Li, W. X., and Ding, S. W. (2007). Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs. Plant Cell 19, 2053-2063. doi: 10.1105/tpc.106.047449
Ding, S. W., Anderson, B. J., Haase, H. R., and Symons, R. H. (1994). New overlapping gene encoded by the cucumber mosaic virus genome. Virology 198, 593-601.
Ding, S.-W., Li, W.-X., and Symons, R. H. (1995). A novel naturally occurring hybrid gene encoded by a plant RNA virus facilitates long distance virus movement. EMBO J. 14, 5762-5772.
Dong, K., Wang, Y., Zhang, Z., Chai, L. X., Tong, X., Xu, J., et al. (2016). Two amino acids near the N-terminus of Cucumber mosaic virus 2b play critical roles in the suppression of RNA silencing and viral infectivity. Mol. Plant Pathol. 17, 173-183. doi: 10.1111/mpp.12270
Du, Z., Chen, A., Chen, W., Liao, Q., Zhang, H., Bao, Y., et al. (2014a). Nuclear-cytoplasmic partitioning of cucumber mosaic virus protein 2b determines the balance between its roles as a virulence determinant and an RNA-silencing suppressor. J. Virol. 88, 5228-5241. doi: 10.1128/jvi.00284-14
Du, Z., Chen, A., Chen, W., Westwood, J. H., Baulcombe, D. C., and Carr, J. P. (2014b). Using a viral vector to reveal the role of MicroRNA159 in disease symptom induction by a severe strain of Cucumber mosaic virus. Plant Physiol. 164, 1378-1388. doi: 10.1104/pp.113.232090
Duan, C. G., Fang, Y. Y., Zhou, B. J., Zhao, J. H., Hou, W. N., Zhu, H., et al. (2012). Suppression of Arabidopsis ARGONAUTE1-mediated slicing, transgene-induced RNA silencing, and DNA methylation by distinct domains of the Cucumber mosaic virus 2b protein. Plant Cell 24, 259-274. doi: 10.1105/tpc.111.092718
Fernández, A., Guo, H. S., Sáenz, P., Simón-Buela, L., Gómez de Cedrón, M., and García, J. A. (1997). The motif V of plum pox potyvirus CI RNA helicase is involved in NTP hydrolysis and is essential for virus RNA replication. Nucleic Acids Res. 25, 4474-4480.
Garcia-Ruiz, H., Takeda, A., Chapman, E. J., Sullivan, C. M., Fahlgren, N., Brempelis, K. J., et al. (2010). Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during turnip mosaic virus infection. Plant Cell 22, 481-496. doi: 10.1105/tpc.109.073056
González, I., Martinez, L., Rakitina, D. V., Lewsey, M. G., Atencio, F. A., Llave, C., et al. (2010). Cucumber mosaic virus 2b protein subcellular targets and interactions: their significance to RNA silencing suppressor activity. Mol. Plant Microbe Interact. 23, 294-303. doi: 10.1094/MPMI-23-3-0294
González, I., Rakitina, D., Semashko, M., Taliansky, M., Praveen, S., Palukaitis, P., et al. (2012). RNA binding is more critical to the suppression of silencing function of Cucumber mosaic virus 2b protein than nuclear localization. RNA 18, 771-782. doi: 10.1261/rna.031260.111
Goto, K., Kobori, T., Kosaka, Y., Natsuaki, T., and Masuta, C. (2007). Characterization of silencing suppressor 2b of Cucumber mosaic virus based on examination of its small RNA-binding abilities. Plant Cell Physiol. 48, 1050-1060. doi: 10.1093/pcp/pcm074
Guo, H. S., and Ding, S. W. (2002). A viral protein inhibits the long range signaling activity of the gene silencing signal. EMBO J. 21, 398-407. doi: 10.1093/emboj/21.3.398
Hamera, S., Song, X., Su, L., Chen, X., and Fang, R. (2012). Cucumber mosaic virus suppressor 2b binds to AGO4-related small RNAs and impairs AGO4 activities. Plant J. 69, 104-115. doi: 10.1111/j.1365-313X.2011.04774.x
Hou, W. N., Duan, C. G., Fang, R. X., Zhou, X. Y., and Guo, H. S. (2011). Satellite RNA reduces expression of the 2b suppressor protein resulting in the attenuation of symptoms caused by Cucumber mosaic virus infection. Mol. Plant Pathol. 12, 595-605. doi: 10.1111/j.1364-3703.2010.00696.x
Li, F., Huang, C., Li, Z., and Zhou, X. (2014). Suppression of RNA silencing by a plant DNA virus satellite requires a host calmodulin-like protein to repress RDR6 expression. PLoS Pathog. 10:e1003921. doi: 10.1371/journal.ppat.1003921
Lucy, A. P., Guo, H. S., Li, W. X., and Ding, S. W. (2000). Suppression of post-transcriptional gene silencing by a plant viral protein localized in the nucleus. EMBO J. 19, 1672-1680. doi: 10.1093/emboj/19.7.1672
Meister, G., and Tuschl, T. (2004). Mechanisms of gene silencing by double-stranded RNA. Nature 431, 343-349. doi: 10.1038/nature02873
Palukaitis, P., and Garcia-Arenal, F. (2003). Cucumoviruses. Adv. Virus Res. 62, 241-323. doi: 10.1016/S0065-3527(03)62005-1
Peragine, A., Yoshikawa, M., Wu, G., Albrecht, H. L., and Poethig, R. S. (2004). SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev. 18, 2368-2379. doi: 10.1101/gad.1231804
Qu, F. (2010). Antiviral role of plant-encoded RNA-dependent RNA polymerases revisited with deep sequencing of small interfering RNAs of virus origin. Mol. Plant Microbe Interact. 23, 1248-1252. doi: 10.1094/mpmi-06-10-0124
Qu, F., Ye, X., Hou, G., Sato, S., Clemente, T. E., and Morris, T. J. (2005). RDR6 has a broad-spectrum but temperature-dependent antiviral defense role in Nicotiana benthamiana. J. Virol. 79, 15209-15217. doi: 10.1128/jvi.79.24.15209-15217.2005
Schwach, F., Vaistij, F. E., Jones, L., and Baulcombe, D. C. (2005). An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol. 138, 1842-1852. doi: 10.1104/pp.105.063537
Schwinghamer, M. W., and Symons, R. H. (1975). Fractionation of cucumber mosaic virus RNA and its translation in a wheat embryo cell-free system. Virology 63, 252-262.
Shi, B.-J., Palukaitis, P., and Symons, R. H. (2002). Differential virulence by strains of Cucumber mosaic virus is mediated by the 2b Gene. Mol. Plant Microbe Interact. 15, 947-955. doi: 10.1094/MPMI.2002.15.9.947
Vaistij, F. E., and Jones, L. (2009). Compromised virus-induced gene silencing in RDR6-deficient plants. Plant Physiol. 149, 1399-1407. doi: 10.1104/pp.108.132688
Wang, J., Yu, W., Yang, Y., Li, X., Chen, T., Liu, T., et al. (2015). Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection. Sci. Rep. 5:16946. doi: 10.1038/srep16946
Wang, X. B., Wu, Q., Ito, T., Cillo, F., Li, W. X., Chen, X., et al. (2010). RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 107, 484-489. doi: 10.1073/pnas.0904086107
Wu, H. J., Wang, Z. M., Wang, M., and Wang, X. J. (2013). Widespread long noncoding RNAs as endogenous target mimics for MicroRNAs in plants. Plant Physiol. 161, 1875-1884. doi: 10.1104/pp.113.215962
Xu, A., Zhao, Z., Chen, W., Zhang, H., Liao, Q., Chen, J., et al. (2013). Self-interaction of the cucumber mosaic virus 2b protein plays a vital role in the suppression of RNA silencing and the induction of viral symptoms. Mol. Plant Pathol. 14, 803-812. doi: 10.1111/mpp.12051
Ying, X. B., Dong, L., Zhu, H., Duan, C. G., Du, Q. S., Lv, D. Q., et al. (2010). RNA-dependent RNA polymerase 1 from Nicotiana tabacum suppresses RNA silencing and enhances viral infection in Nicotiana benthamiana. Plant Cell 22, 1358-1372. doi: 10.1105/tpc.109.072058
Zhang, X., Yuan, Y. R., Pei, Y., Lin, S. S., Tuschl, T., Patel, D. J., et al. (2006). Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev. 20, 3255-3268. doi: 10.1101/gad.1495506
Zhao, J.-H., Hua, C.-L., Fang, Y.-Y., and Guo, H.-S. (2016). The dual edge of RNA silencing suppressors in the virus-host interactions. Curr. Opin. Virol. 17, 39-44. doi: 10.1016/j.coviro.2015.12.002
Zhu, Q.-H., Stephen, S., Taylor, J., Helliwell, C. A., and Wang, M.-B. (2014). Long noncoding RNAs responsive to Fusarium oxysporum infection in Arabidopsis thaliana. New Phytol. 201, 574-584. doi: 10.1111/nph.12537