Phylogenetics and Evolution of Potato Virus V: Another Potyvirus that Originated in the Andes.

Andean crop domestication center; Andean lineages; Europe; South America; biosecurity significance; dating; evolution; high-throughput sequencing; interpretation; phylogenetics; population genetics; potato; potato virus V; prehistory; virus disease; Biological Evolution; Plant Diseases/virology; Phylogeny; Potyvirus/classification; Solanum tuberosum/virology; Plant Diseases; Potyvirus; Solanum; Solanum tuberosum; Agronomy and Crop Science; Plant Science

Abstract :

[en] Potato virus V (PVV) causes a disease of potato (Solanum tubersosum) in South and Central America, Europe, and the Middle East. We report here the complete genomic sequences of 42 new PVV isolates from the potato's Andean domestication center in Peru and of eight historical or recent isolates from Europe. When the principal open reading frames of these genomic sequences together with those of nine previously published genomic sequences were analyzed, only two from Peru and one from Iran were found to be recombinant. The phylogeny of the 56 nonrecombinant open reading frame sequences showed that the PVV population had two major phylogroups, one of which formed three minor phylogroups (A1 to A3) of isolates, all of which are found only in the Andean region of South America (Peru and Colombia), and the other formed two minor phylogroups, a basal one of Andean isolates (A4) that is paraphyletic to a crown cluster containing all the isolates found outside South America (World). This suggests that PVV originated in the Andean region, with only one minor phylogroup spreading elsewhere in the world. In minor phylogroups A1 and A3, there were two subclades on long branches containing isolates from S. phureja evolving more rapidly than the others, and these interfered with dating calculations. Although no temporal signal was directly detected among the dated nonrecombinant sequences, PVV and potato virus Y (PVY) are from the same potyvirus lineage and are ecologically similar, so "subtree dating" was done via a single maximum likelihood phylogeny of PVV and PVY sequences, and PVY's well-supported 157 ce "time to most common recent ancestor" was extrapolated to date that of PVV as 29 bce. Thus the independent historical coincidences supporting the datings of the PVV and PVY phylogenies are the same; PVV arose ≥2,000 years ago in the Andes and was taken to Europe during the Columbian Exchange, where it diversified around 1853 ce, soon after the European potato late blight pandemic. PVV is likely to be more widespread than currently realized and is of biosecurity relevance for world regions that have not yet recorded its presence.[Formula: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

Disciplines :

Environmental sciences & ecology
Phytobiology (plant sciences, forestry, mycology...)

Author, co-author :

Fuentes, Segundo; Crop and System Sciences Division, International Potato Center, La Molina, Lima 15023, Peru

Gibbs, Adrian J; Emeritus Faculty, Australian National University, Canberra, ACT 2600, Australia

Adams, Ian P; Fera Science Ltd, Sand Hutton, York YO41 1LZ, UK

Hajizadeh, Mohammad; Plant Protection Department, Faculty of Agriculture, University of Kurdistan, Sanandaj 6617715175, Iran

Kreuze, Jan ; Crop and System Sciences Division, International Potato Center, La Molina, Lima 15023, Peru

Fox, Adrian; Fera Science Ltd, Sand Hutton, York YO41 1LZ, UK

Blouin, Arnaud ; Université de Liège - ULiège > Département GxABT > Gestion durable des bio-agresseurs

Jones, Roger A C ; University of Western Australia Institute of Agriculture, University of Western Australia, Crawley, WA 6009, Australia

Language :

English

Title :

Phylogenetics and Evolution of Potato Virus V: Another Potyvirus that Originated in the Andes.

Publication date :

February 2022

Journal title :

Plant Disease

ISSN :

0191-2917

Publisher :

American Phytopathological Society, United States

Volume :

106

Issue :

Pages :

691-700

Peer reviewed :

Peer Reviewed verified by ORBi

Additional URL :

https://apsjournals.apsnet.org/doi/pdf/10.1094/PDIS-09-21-1897-RE

Funders :

CGIAR - Consultative Group on International Agricultural Research [ID]
BMGF - Bill and Melinda Gates Foundation [US-WA] [US-WA]
FPS Health Federal Public Service Health, Food Chain Safety and Environment [BE]

Funding text :

Funding: From 2016 to 2019, the main sequencing component of this research was funded at the International Potato Center by the CGIAR Research Program on Roots, Tubers and Bananas (RTB), CGIAR trust fund contributors (https://www.cgiar.org/funders/), the Peruvian Programa Nacional de Innovacion Agraria (contract no. 029-2015-INIA-PNIA/ UPMSI/IE), and the Bill and Melinda Gates Fund; and at Fera Science Ltd. (FS) by the United Kingdom Government’s Department of Environment Food and Rural Affairs (DEFRA) Future Proofing Plant Health Project under the Defra-Fera Science Ltd. long-term services agreement and via the EUPHRESCO VirusCurate project. Funding for sequencing was also provided by The Belgian FPS Health Food Chain Safety and Environment under Project RT18/3 SERVIPLANT.

Available on ORBi :

since 23 August 2022

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