protein folding; hen egg-white lysozyme; folding intermediates; mass spectrometry; circular dichroism; fluorescence
Abstract :
[en] Stopped-flow fluorescence and circular dichroism spectroscopy have been used in conjunction with quenched-flow hydrogen exchange labelling, monitored by electrospray ionization mass spectrometry, to compare the refolding kinetics of hen egg-white lysozyme at 20 degrees C and 50 degrees C. At 50 degrees C there is clear evidence for distinct fast and slow refolding populations, as observed at 20 degrees C, although folding occurs significantly more rapidly. The folding process is, however, substantially more cooperative at the higher temperature. In particular, the transient intermediate on the major refolding pathway at 20 degrees C, having persistent native-like structure in the alpha-helical domain of the protein, is not detected by hydrogen exchange labelling at 50 degrees C. Ln addition, the characteristic maximum in negative ellipticity and the minimum in fluorescence intensity observed in far UV CD and intrinsic fluorescence experiments at 20 degrees C, respectively, are not seen at 50 degrees C. Addition of 2 M NaCl to the refolding buffer at 50 degrees C, however, regenerates both the hydrogen exchange and optical properties associated with the alpha-domain intermediate but has no significant effect on the overall refolding kinetics. Together with previous findings, these results indicate that non-native interactions within the alpha-domain intermediate are directly responsible for the unusual optical properties observed during refolding, and that this intermediate accumulates as a consequence of its intrinsic stability in a folding process where the formation of stable structure in the beta-domain constitutes the rate-limiting step for the majority of molecules. (C) 1998 Academic Press Limited.
Disciplines :
Biochemistry, biophysics & molecular biology
Author, co-author :
Matagne, André ; University of Oxford > Oxford Centre for Molecular Sciences
Chung, E. W.; Oxford Centre for Molecular Sciences
Ball, L. J.; Oxford Centre for Molecular Sciences
Radford, S. E.; Oxford Centre for Molecular Sciences
Robinson, C. V.; Oxford Centre for Molecular Sciences
Dobson, C. M.; University of Oxford > Oxford Centre for Molecular Sciences
Language :
English
Title :
The origin of the alpha-domain intermediate in the folding of hen lysozyme
Bai Y., Milne J.S., Mayne L., Englander W. Primary structure effects on peptide group hydrogen exchange. Proteins: Struct. Funct. Genet. 17:1993;75-86
Baldwin R.L. The nature of protein folding pathways the classical view versus the new view. J. Biomol. NMR. 5:1995;103-109
Baldwin R.L. On-pathway versus off-pathway folding intermediates. Folding Des. 1:1996;R1-R8
Blake C.C.F., Koenig D.F., Mair G.A., Sarma R. Crystal structure of lysozyme by X-ray diffraction. Nature. 206:1965;757-761
Brandts J.F., Halvorson H.R., Brennan M. Consideration of the possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residues. Biochemistry. 14:1975;4953-4963
Chaffotte A.F., Guillou Y., Goldberg M.E. Kinetic resolution of peptide bond and side chain far UV circular dichroism during the folding of hen egg white lysozyme. Biochemistry. 31:1992;9694-9702
Creighton T.E. The energetic ups and downs of protein folding. Nature Stuct. Biol. 1:1994;135-138
Denton M.E., Rothwarf D.M., Scheraga H.A. Kinetics of folding of guanidine-denatured hen egg white lysozyme and carboxymethyl (Cys6,Cys127)-lysozyme a stopped flow absorbance and fluorescence study. Biochemistry. 33:1994;11225-11236
Dill A.K., Chan H.S. From Levinthal to pathways to funnels. Nature Struct. Biol. 4:1997;10-19
Dobson C.M. Unfolded proteins, compact states and molten globules. Curr. Opin. Struct. Biol. 2:1992;6-12
Dobson C.M., Evans P.A., Radford S.E. Understanding how proteins fold the lysozyme story so far. Trends Biochem. Sci. 19:1994;31-37
Dobson C.M., Sali A., Karplus M. Protein Folding A Perspective from Theory & Experiment. Angew. Chem. 1998;. In the press
Evans P.A., Radford S.E. Probing the structure of folding intermediates. Curr. Opin. Struct. Biol. 4:1994;100-106
Eyles S.J., Radford S.E., Robinson C.V., Dobson C.M. Kinetic consequences of the removal of a disulfide bridge on the folding of hen lysozyme. Biochemistry. 33:1994;13038-13048
Fersht A.R. Optimization of rates of protein folding the nucleation-condensation mechanism and its implications. Proc. Natl Acad. Sci. USA. 92:1995;10869-10873
Fink A.L. Compact intermediate states in protein folding. Annu. Rev. Biophys. Biomol. Struct. 24:1995;495-522
Gladwin S.T., Evans P.A. Structure of very early protein folding intermediates new insights through a variant of hydrogen exchange labelling. Folding Des. 1:1996;407-417
Guo Z., Thirumalai D. Kinetics of protein folding nucleation mechanism, time scales, and pathways. Biopolymers. 36:1995;83-102
Itzhaki L.S., Evans P.A. Solvent isotope effects on the refolding kinetics of hen egg-white lysozyme. Protein Sci. 5:1996;140-146
Itzhaki L.S., Evans P.A., Dobson C.M., Radford S.E. Tertiary interactions in the folding pathway of hen lysozyme: kinetic studies using fluorescent probes. Biochemistry. 33:1994;5212-5220
Kato S., Shimamoto N., Utiyama H. Identification and characterization of the direct folding process of hen egg white lysozyme. Biochemistry. 21:1982;38-43
Kiefhaber T. Kinetic traps in lysozyme folding. Proc. Natl Acad. Sci. USA. 92:1995;9029-9033
Kim P.S., Baldwin R.L. Intermediates in the folding reactions of small proteins. Annu. Rev. Biochem. 59:1990;631-660
Kotik M., Radford S.E., Dobson C.M. Comparison of the refolding of hen lysozyme from dimethyl sulfoxide and guanidinium chloride. Biochemistry. 34:1995;1714-1724
Kuwajima K. The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure. Proteins: Struct. Funct. Genet. 6:1989;87-103
Kuwajima K., Hiraoka Y., Ikeguchi M., Sugai S. Comparison of the transient folding intermediates in lysozyme and α-lactalbumin. Biochemistry. 24:1985;874-881
Loh S.N., Kay M.S., Baldwin R.L. Structure and stability of a second molten globule intermediate in the apomyoglobin folding pathway. Proc. Natl Acad. Sci. USA. 92:1995;5446-5450
Matagne A., Dobson C.M. The folding process of hen lysozyme a perspective from the "New View" Cell. Mol. Life Sci. 1998;. In the press
Matagne A., Radford S.E., Dobson C.M. Fast and slow tracks in lysozyme folding: insight into the role of domains in the folding process. J. Mol. Biol. 267:1997;1068-1074
Matthews C.R. Pathways of protein folding. Annu. Rev. Biochem. 62:1993;653-683
Miranker A.D., Robinson C.V., Radford S.E., Aplin R.T., Dobson C.M. Detection of transient protein folding populations by mass spectrometry. Science. 262:1993;896-900
Mirny L.A., Abkevich V., Shakhnovich E.I. Universality and diversity of the protein folding scenarios a comprehensive analysis with the aid of a latticemodel. Folding Des. 1:1996;103-116
Parker M.J., Spencer J., Clarke A.R. An integrated kinetic analysis of intermediates and transition states in protein folding reactions. J. Mol. Biol. 253:1995;771-786
Plaxco K.W., Dobson C.M. Time-resolved biophysical methods in the study of protein folding. Curr. Opin. Struct. Biol. 6:1996;630-636
Ptitsyn O.B. Molten globule and protein folding. Adv. Protein Chem. 47:1995;83-229
Radford S.E., Dobson C.M. Insights into protein folding using physical techniques studies of lysozyme and α-lactalbumin. Phil. Trans. Roy. Soc. ser. B. 348:1995;17-25
Radford S.E., Dobson C.M., Evans P.A. The folding pathway of hen lysozyme involves partially structured intermediates and multiple pathways. Nature. 358:1992;302-307
Roder H. Watching protein folding unfold. Nature Stuct. Biol. 2:1995;817-820
Roder H., Colón W. Kinetic role of early intermediates in protein folding. Curr. Opin. Struct. Biol. 7:1997;15-28
Roder H., Elöve G.A. Early stages of protein folding. Pain R.H. Mechanisms of Protein Folding. 1994;26-54 Oxford University Press, Oxford
Rothwarf D.M., Scheraga H.A. Role of non-native aromatic and hydrophobic interactions in the folding of hen egg white lysozyme. Biochemistry. 35:1996;13797-13807
Schmid F.X. Kinetics of unfolding and refolding of single-domain proteins. Creighton T.E. Protein Folding. 1992;197-241 W. H. Freeman & Co, New York
Schulman B., Kim P.S., Dobson C.M., Redfield C. A residue specific view of the non-cooperative folding of a molten globule. Nature Struct. Biol. 4:1997;. 640-634
Sosnick T.R., Mayne L., Hiller R., Englander S.W. The barriers in protein folding. Nature Struct. Biol. 1:1994;149-156
Wildegger G., Kiefhaber T. Three-state model for lysozyme folding: triangular folding mechanism with energetically trapped intermediate. J. Mol. Biol. 270:1997;294-304
Wolynes P.G., Luthey-Schulten Z., Onuchic J.N. Fast-folding experiments and the topography of protein folding energy landscapes. Chem. Biol. 3:1996;425-432