Open-hardware wireless controller and 3D-printed pumps for efficient liquid manipulation

Gervasi, Alain; Cardol, Pierre; Meyer, Patrick

doi:10.1016/j.ohx.2021.e00199

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Open-hardware wireless controller and 3D-printed pumps for efficient liquid manipulation

Gervasi, Alain; Cardol, Pierre; Meyer, Patrick

2021 • In HardwareX, 9

Peer Reviewed verified by ORBi

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https://hdl.handle.net/2268/261580

DOI
10.1016/j.ohx.2021.e00199

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Keywords :

Automation; 3D printing; Liquid handling

Disciplines :

Biotechnology

Author, co-author :

Gervasi, Alain ; Université de Liège - ULiège > Département des sciences de la vie > Génétique et physiologie des microalgues

Cardol, Pierre ; Université de Liège - ULiège > Département des sciences de la vie > Génétique et physiologie des microalgues

Meyer, Patrick ; Université de Liège - ULiège > Département des sciences de la vie > Biologie des systèmes et bioinformatique

Language :

English

Title :

Open-hardware wireless controller and 3D-printed pumps for efficient liquid manipulation

Publication date :

April 2021

Journal title :

HardwareX

eISSN :

2468-0672

Publisher :

Elsevier, Netherlands

Volume :

Peer reviewed :

Peer Reviewed verified by ORBi

Additional URL :

https://doi.org/10.17605/OSF.IO/ZP2S6

European Projects :

H2020 - 682580 - BEAL - Bioenergetics in microalgae : regulation modes of mitochondrial respiration, photosynthesis, and fermentative pathways, and their interactions in secondary algae

Name of the research project :

PDR T.0032

Funders :

F.R.S.-FNRS - Fonds de la Recherche Scientifique
EC - European Commission

Available on ORBi :

since 02 July 2021

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Bibliography

Ngo, T.D., Kashani, A., Imbalzano, G., Nguyen, K.T.Q., Hui, D., Hui, David, Additive manufacturing (3D printing): a review of materials, methods, applications and challenges. Compos. B Eng. 143 (2018), 172–196, 10.1016/j.compositesb:2018.02.012.
Schubert, C., van Langeveld, M.C., Donoso, L.A., Innovations in 3D printing: a 3D overview from optics to organs. Br. J. Ophthalmol. 98:2 (2014), 159–161, 10.1136/bjophthalmol-2013-304446.
Coakley, M., Hurt, D.E., 3D printing in the laboratory: maximize time and funds with customized and open-source Labware. J. Lab. Autom. 21:4 (2016), 489–495, 10.1177/2211068216649578.
Dhankani, K.C., Pearce, J.M., Open-source laboratory sample rotator mixer and shaker. HardwareX 1 (2017), 1–12, 10.1016/j.ohx.2016.07.001.
Zhang, C., Anzalone, N.C., Faria, R.P., Pearce, J.M., de Brevern, A.G., Open-source 3D-printable optics equipment. PLoS One, 8(3), 2013, e59840, 10.1371/journal.pone.005984010.1371/journal.pone.0059840.g00110.1371/journal.pone.0059840.g00210.1371/journal.pone.0059840.g00310.1371/journal.pone.0059840.g00410.1371/journal.pone.0059840.g00510.1371/journal.pone.0059840.g00610.1371/journal.pone.0059840.g00710.1371/journal.pone.0059840.g00810.1371/journal.pone.0059840.g00910.1371/journal.pone.0059840.g01010.1371/journal.pone.0059840.t001.
Dragone, V., Sans, V., Rosnes, M.H., Kitson, P.J., Cronin, L., 3D-printed devices for continuous-flow organic chemistry. Beilstein J. Organ. Chem. 9 (2013), 951–959, 10.3762/bjoc.9.109.
He, Y., Xue, G.-H., Fu, J.-Z., Fabrication of low cost soft tissue prostheses with the desktop 3D printer. Sci. Rep., 4, 2014, 6973, 10.1038/srep06973.
Choosing the Right Pump for Your Application & Budget. Harvard apparatus. http://www.harvardapparatus.com/media/harvard/pdf/Pump%20Selection%20Guide.pdf, (accessed 20.07.2020).
International Electrotechnical Commission. Medical electrical equipment—part 2–24, Particular requirements for the basic safety and essential performance of infusion pumps and controllers. IEC 60601–2-24:2012. Geneva: International Electrotechnical Commission; 2.0 ed; 2012.
Syringe pumps. Medical expo. https://www.medicalexpo.com/medical-manufacturer/syringe-pump-2083-_3.html, 2020 (accessed 17.07.2020).
Microfluidic syringe pumps. Darwin microfluidic. https://darwin-microfluidics.com/collections/syringe-pump?page=2, 2020 (accessed 17.17.2020).
Peristaltic pump tubing. Elkay. https://www.elkaylabs.com/pages/files/Elkay_Documents/07_Pump_Tubing.pdf, (accessed 20.06.2020).
Esser, F., Masselter, T., Speck, T., Silent pumpers: a comparative topical overview of the peristaltic pumping principle in living nature, engineering, and biomimetics. Adv. Intell. Syst., 1(2), 2019, 1900009, 10.1002/aisy.v1.210.1002/aisy.201900009.
Peristaltic pumps. Medical expo. https://www.medicalexpo.com/medical-manufacturer/laboratory-peristaltic-pump-13781.html, 2020 (accessed 07.17.2020).
József, K., Levente, K., Peristaltic pumps – a review on working and control possibilities. IEEE 12th International Symposium on Applied Machine Intelligence and Informatics, 2014, 191–194, 10.1109/SAMI.2014.6822404.
Christian Rohrer, How Things Work — Pipettors. laboratorymedicine 32(9) (2014) 514-517. 10.1309/R229-A3G9-4DGF-PCUE.
The open-source Definition. https://opensource.org/osd, (accessed 06.20.2020).
Gib, A., Building open-source Hardware: DIY Manufacturing for Hackers and Makers. Addison-Wesley, 2015, 253–277.
Behrens, M.R., Fuller, H.C., Swist, E.R., Wu, J., Islam, M.M., Long, Z., Ruder, W.C., Jr Steward, R., Open-source, 3D-printed peristaltic pumps for small volume point-of-care liquid handling. Sci Rep., 10, 2020, 1543, 10.1038/s41598-020-58246-6.
Precise Peristaltic Pump. https://www.thingiverse.com/thing:2619479, 2017 (accessed 08.08.2020).
Milanovic, J.Z., Milanovic, P., Kragic, R., Kostic, M., “Do-It-Yourself” reliable pH-stat device by using open-source software, inexpensive hardware and available laboratory equipment. PLos One, 13(3), 2018, e0193744, 10.1371/journal.pone.0193744.
Wijnen, B., Hunt, E.J., Anzalone, G.C., Pearce Joshua, M., Open-source syringe pump library. PLos One, 9(9), 2014, e107216, 10.1371/journal.pone.0107216.
Jian Wern Ong, Dwayne Chung Kim Chung, Eric Shen Lin, Hassan Ali Abid, Oi Wah Liew, Tuck Wah Ng. Syringe infusion pump with absolute piston displacement control. Rev. Sci. Instrum. 90 (2019) 076108. 10.1063/1.5099271.
Cubberley, M.S., Hess, W.A., An inexpensive programmable dual-syringe pump for the chemistry laboratory. J. Chem. Educ. 94 (2016), 72–74, 10.1021/acs.jchemed.6b00598.
Lake John, R., Heyde Keith, C., Ruder Warren, C., Low-cost feedback-controlled syringe pressure pumps for microfluidics applications. Plos One, 12(4), 2017, e0175089, 10.1371/journal.pone.0175089.
Bravo-Martinez, J., Open-source 3D-printed 1000 μL micropump. HardwareX 3 (2017), 110–116, 10.1016/j.ohx.2017.08.002.
D. Brennan Martin, F. Bokhari Fahad, T. Eddington David. Open Design 3D-Printable Adjustable Micropipette that Meets the ISO Standard for Accuracy. Micromachines (Basel) 9(4) (2018) 191. https://dx.doi.org/10.3390%2Fmi9040191.
Lee, E., Kim, B., Choi, Sungyoung, An open-source programmable smart pipette for portable cell separation and counting. RSC Adv., 2019, 71, 10.1039/C9RA08368E.
Faiña, A., Nejati, B., Stoy, K., EvoBot: an open-source, modular, liquid handling robot for scientific experiments. Appl. Sci., 10(3), 2020, 814, 10.3390/app10030814.
Carvalho, M.C., Portable open-source autosampler for shallow waters. HardwareX, 8, 2020, e00142, 10.1016/j.ohx.2020.e00142.
Klar, V., Pearce, J.M., Kärki, P., Kuosmanen, P., Ystruder: open-source multifunction extruder with sensing and monitoring capabilities. Hardware X, 6, 2019, e00080, 10.1016/j.ohx.2019.e00080.
O'Brien, M., Konings, L., Martin, M., Heap, J., Harnessing open-source technology for low-cost automation in synthesis: flow chemical deprotection of silyl ethers using a homemade autosampling system. Tetrahedron Lett. 58:25 (2017), 2409–2413, 10.1016/j.tetlet.2017.05.008.
Zhang, C., Wijnen, B., Pearce, J.M., Open-source 3-D platform for low-cost scientific instrument ecosystem. J. Lab. Autom. 21:4 (2016), 517–525, 10.1177/2211068215624406.
Pearce, J.M., Anzalone, N.C., Heldt, C.L., Open-source Wax RepRap 3-D printer for rapid prototyping paper-based microfluidics. J. Lab. Autom. 21:4 (2016), 510–516, 10.1177/2211068215624408.
Carvalho, M.C., Murray, R.H., Osmar, the open-source microsyringe autosampler. HardwareX 3 (2018), 10–38, 10.1016/j.ohx.2018.01.001.
Takahashi, C.N., Miller, A.W., Ekness, F., Dunham, M.J., Klavin, E., A low cost, customizable turbidostat for use in synthetic circuit characterization. ACS Synth Biol. 4:1 (2014), 32–38, 10.1021/sb500165g.
Chan, K., Coen, M., Hardick, J., Gaydos, C.A., Wong, K.-Y., Smith, C., Wilson, S.A., Vayugundla, S.P., Wong, S., Romesberg, F., Low-cost 3D printers enable high-quality and automated sample preparation and molecular detection. PLoS One, 11(6), 2014, e0158502, 10.1371/journal.pone.015850210.1371/journal.pone.0158502.g00110.1371/journal.pone.0158502.g00210.1371/journal.pone.0158502.g00310.1371/journal.pone.0158502.g00410.1371/journal.pone.0158502.g00510.1371/journal.pone.0158502.g00610.1371/journal.pone.0158502.t00110.1371/journal.pone.0158502.s00110.1371/journal.pone.0158502.s00210.1371/journal.pone.0158502.s00310.1371/journal.pone.0158502.s00410.1371/journal.pone.0158502.s00510.1371/journal.pone.0158502.s006.
Symes, M.D., Kitson, P.J., Yan, J., Richmond, C.J., Cooper, G.J.T., Bowman, R.W., Vilbrandt, T., Cronin, L., Integrated 3D-printed reactionware for chemical synthesis and analysis. Nat. Chem. 4:5 (2012), 349–354, 10.1038/nchem.1313.
Kitson, P.J., Glatzel, S., Cronin, L., The digital code driven autonomous synthesis of ibuprofen automated in a 3D-printer-based robot. Beilstein J. Organ. Chem. 12 (2016), 2776–2783, 10.3762/bjoc.12.276.
G. Gome, J. Waksberg, A. Grishko, I. Y. Wald, O. Zuckerman, OpenLH: Open Liquid-Handling System for Creative Experimentation with Biology. In Proceedings of the Thirteenth International Conference on Tangible, Embedded, and Embodied Interaction; TEI '19; ACM: New York, NY, USA, (2019) 55-64. 10.1145/3294109.3295619.
Gerber, L.C., Calasanz-Kaiser, A., Hyman, L., Voitiuk, K., Patil, U., Riedel-Kruse, I.H., Liquid-Handling Lego Robots and Experiments for STEM Education and Research. PLoS Biol., 15(3), 2017, e2001413, 10.1371/journal.pbio.2001413.
Barthels, F., Barthels, U., Schwickert, M., Schirmeister, T., FINDUS: an open-source 3D printable liquid-handling workstation for laboratory automation in life sciences. SLAS Technol. 25:2 (2019), 190–199, 10.1177/2472630319877374.
Opentrons | Open-source Pipetting Robots for Biologists, 2020 https://opentrons.com/ (accessed 07.30.2020).
Eggert, Sebastian, Mieszczanek, Pawel, Meinert, Christoph, Hutmacher, Dietmar W, OpenWorkstation: a modular open-source technology for automated in vitro workflows. HardwareX, 8, 2020, e00152, 10.1016/j.ohx.2020.e00152.
Gervasi, Alain, Cardol, Pierre, Meyer, Patrick E., Designing an Open-hardware Remotely Controllable Phototurbidostat for Studying Algal Growth. ICCBB '19: Proceedings of the 2019 3rd International Conference on Computational Biology and Bioinformatics, 2019, 13–19, 10.1145/3365966.3365969.
ESP32 Overview. https://www.espressif.com/en/products/socs/esp32/overview, 2019 (accessed 02.10.2021).
Hunkeler, U., Truong, H.L., Stanford-Clark, A., MQTT-S A publish/subscribe protocol for Wireless Sensor Networks. 3rd International Conference on Communication Systems Software and Middleware and Workshops (COMSWARE, 2008, ’08), 10.1109/comswa.2008.4554519.
MQTT. http://mqtt.org/, (accessed 04.20.2020).
MQTT Version 5.0. https://docs.oasis-open.org/mqtt/mqtt/v5.0/mqtt-v5.0.html, (accessed 02.10.2021).
G-code. https://reprap.org/wiki/G-code, 2019 (accessed 05.19.2020).
Node-RED. https://Node-RED.org/, (accessed 08.29.2020).
Nick Heath, How IBM's Node-RED is hacking together the Internet of things. https://www.techrepublic.com/article/node-red/, 2014 (accessed 04.20.2020).
Arduino IDE. https://www.arduino.cc/en/main/software, 2020 (accessed 08.20.2020).
DRV8825. https://www.pololu.com/product/2133, 2020 (accessed 08.20.2020).
Bagad, V.S., Mechatronics. Technical Publications Pune, 2008, 1–8.
Gorman, D.S., Levine, R.P., Proc. Natl. Acad. Sci. USA 54 (1965), 1665–1669.
Perez, E., Lapaille, M., Degand, H., Cilibrasi, L., Villavicencio-Queijeiro, A., Morsomme, P., Cardol, P., The mitochondrial respiratory chain of the secondary green alga Euglena gracilis shares many additional subunits with parasitic Trypanosomatidae. Mitochondrion 19 (2014), 338–349, 10.1016/j.mito.2014.02.001.
WS2812B Intelligent control LED integrated light source. https://www.kitronik.co.uk/pdf/WS2812B-LED-datasheet.pdf (accessed 04.20.2020).