Biliary Microbiota, Gallstone Disease and Infection with Opisthorchis felineus

RNA 16S; Article; DNA extraction; Opisthorchis; Adult; Animals; Bacteria; Female; Gallstones; Gastrointestinal Microbiome; Humans; Male; Middle Aged; Opisthorchiasis

Abstract :

[en] Background: There is increasing interest in the microbiome of the hepatobiliary system. This study investigated the influence of infection with the fish-borne liver fluke, Opisthorchis felineus on the biliary microbiome of residents of the Tomsk region of western Siberia. Methodology/Principal Findings: Samples of bile were provided by 56 study participants, half of who were infected with O. felineus, and all of who were diagnosed with gallstone disease. The microbiota of the bile was investigated using high throughput, Illumina-based sequencing targeting the prokaryotic 16S rRNA gene. About 2,797, discrete phylotypes of prokaryotes were detected. At the level of phylum, bile from participants with opisthorchiasis showed greater numbers of Synergistetes, Spirochaetes, Planctomycetes, TM7 and Verrucomicrobia. Numbers of > 20 phylotypes differed in bile of the O. felineus-infected compared to non-infected participants, including presence of species of the genera Mycoplana, Cellulosimicrobium, Microlunatus and Phycicoccus, and the Archaeans genus, Halogeometricum, and increased numbers of Selenomonas, Bacteroides, Rothia, Leptotrichia, Lactobacillus, Treponema and Klebsiella. Conclusions/Significance: Overall, infection with the liver fluke O. felineus modified the biliary microbiome, increasing abundance of bacterial and archaeal phylotypes. © 2016 Saltykova et al.

Disciplines :

Immunology & infectious disease

Author, co-author :

Saltykova, I. V.; Central Research Laboratory, Siberian State Medical University, Tomsk, Russian Federation, Laboratory of Catalytic Research, Tomsk State University, Tomsk, Russian Federation, Research Center for Neglected Diseases of Poverty, Department of Microbiology, Immunology and Tropical Medicine, School of Medicine & Health Sciences, George Washington University, Washington, DC, United States

Petrov, Viacheslav ; Siberian State Medical University (SSMU), 2, Moscow Trakt, Tomsk, 634050, Russian Federation

Logacheva, M. D.; Lomonosov Moscow State University, Faculty of Bioengineering and Bioinformatics, Moscow, Russian Federation

Ivanova, P. G.; Central Research Laboratory, Siberian State Medical University, Tomsk, Russian Federation

Merzlikin, N. V.; Surgical diseases department of Pediatric faculty, Siberian State Medical University, Tomsk, Russian Federation

Sazonov, A. E.; Central Research Laboratory, Siberian State Medical University, Tomsk, Russian Federation

Ogorodova, L. M.; Department of Faculty Pediatrics, Siberian State Medical University, Tomsk, Russian Federation

Brindley, P. J.; Research Center for Neglected Diseases of Poverty, Department of Microbiology, Immunology and Tropical Medicine, School of Medicine & Health Sciences, George Washington University, Washington, DC, United States

Language :

English

Title :

Biliary Microbiota, Gallstone Disease and Infection with Opisthorchis felineus

Publication date :

2016

Journal title :

PLoS Neglected Tropical Diseases

ISSN :

1935-2727

eISSN :

1935-2735

Publisher :

Public Library of Science

Volume :

Issue :

Peer reviewed :

Peer Reviewed verified by ORBi

Funders :

NIAID - National Institute of Allergy and Infectious Diseases
NCI - National Cancer Institute

Available on ORBi :

since 27 May 2021

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