Life sciences: Multidisciplinary, general & others
Author, co-author :
Petrov, Viacheslav ; Siberian State Medical University (SSMU), 2, Moscow Trakt, Tomsk, 634050, Russian Federation
Fernández-Peralbo, M. A.; Department of Analytical Chemistry, Annex Marie Curie Building, Campus of Rabanales, University of Córdoba, Córdoba, E-14071, Spain
Derks, R.; Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, Netherlands
Knyazeva, E. M.; School of Core Engineering Education, National Research Tomsk Polytechnic University, Tomsk, Russian Federation
Merzlikin, N. V.; Surgical Diseases Department of Pediatric Faculty, Siberian State Medical University, Tomsk, Russian Federation
Sazonov, A. E.; Central Research Laboratory, Siberian State Medical University, Tomsk, Russian Federation
Mayboroda, O. A.; Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, Netherlands, Department of Chemistry, Tomsk State University, Tomsk, Russian Federation
Saltykova, I. V.; Central Research Laboratory, Siberian State Medical University, Tomsk, Russian Federation
Language :
English
Title :
Biliary Microbiota and Bile Acid Composition in Cholelithiasis
scite shows how a scientific paper has been cited by providing the context of the citation, a classification describing whether it supports, mentions, or contrasts the cited claim, and a label indicating in which section the citation was made.
Bibliography
J. Verdier, T. Luedde, and G. Sellge, "Biliary Mucosal Barrier and Microbiome," Viszeralmedizin, vol. 31, no. 3, pp. 156-161, 2015.
E. Jimenez, B. Sanchez, A. Farina, A. Margolles, and J. M. Rodriguez, "Characterization of the bile and gall bladder microbiota of healthy pigs," Microbiology, vol. 3, pp. 937-949, 2014.
H. Shen, F. Ye, L. Xie et al., "Metagenomic sequencing of bile from gallstone patients to identify different microbial community patterns and novel biliary bacteria," Scientific Reports, vol. 5, no. 1, article 17450, 2015.
N. Molinero, L. Ruiz, C. Milani et al., "The human gallbladder microbiome is related to the physiological state and the biliary metabolic profile," Microbiome., vol. 7, no. 1, p. 100, 2019.
P. Pereira, V. Aho, J. Arola et al., "Bile microbiota in primary sclerosing cholangitis: impact on disease progression and development of biliary dysplasia," PLoS One, vol. 12, no. 8, article e0182924, 2017.
J. L. Plieskatt, R. Deenonpoe, J. P. Mulvenna et al., "Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome," The FASEB Journal, vol. 27, no. 11, pp. 4572-4584, 2013.
I. V. Saltykova, V. A. Petrov, M. D. Logacheva et al., "Biliary microbiota, gallstone disease and infection with Opisthorchis felineus," PLOS Neglected Tropical Diseases, vol. 10, no. 7, article e0004809, 2016.
J. M. Ridlon, P. G. Wolf, and H. R. Gaskins, "Taurocholic acid metabolism by gut microbes and colon cancer," Gut Microbes, vol. 7, no. 3, pp. 201-215, 2016.
J. Y. L. Chiang and J. M. Ferrell, "Bile acid metabolism in liver pathobiology," Gene Expression, vol. 18, no. 2, pp. 71-87, 2018.
M. S. Hashim Abdalla, S. D. Taylor-Robinson, A. W. Sharif et al., "Differences in phosphatidylcholine and bile acids in bile from Egyptian and UK patients with and without cholangiocarcinoma," HPB, vol. 13, no. 6, pp. 385-390, 2011.
O. B. Ijare, T. Bezabeh, N. Albiin et al., "Absence of glycochenodeoxycholic acid (GCDCA) in human bile is an indication of cholestasis: a 1H MRS study," NMR in Biomedicine, vol. 22, no. 5, pp. 471-479, 2009.
T. Liang, W. Su, Q. Zhang et al., "Roles of sphincter of Oddi laxity in bile duct microenvironment in patients with cholangiolithiasis: from the perspective of the microbiome and metabolome," Journal of the American College of Surgeons, vol. 222, no. 3, pp. 269-280.e10, 2016.
Y. Alnouti, I. L. Csanaky, and C. D. Klaassen, "Quantitativeprofiling of bile acids and their conjugates in mouse liver, bile, plasma, and urine using LC-MS/MS," Journal of Chromatography B, Analytical Technologies in the Biomedical and Life Sciences, vol. 873, no. 2, pp. 209-217, 2008.
J. G. Caporaso, J. Kuczynski, J. Stombaugh et al., "QIIME allows analysis of high-throughput community sequencing data," Nature Methods, vol. 7, no. 5, pp. 335-336, 2010.
R. C. Edgar, "Search and clustering orders of magnitude faster than BLAST," Bioinformatics, vol. 26, no. 19, pp. 2460-2461, 2010.
T. Z. DeSantis, P. Hugenholtz, N. Larsen et al., "Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB," Applied and Environmental Microbiology, vol. 72, no. 7, pp. 5069-5072, 2006.
J. N. Paulson, O. C. Stine, H. C. Bravo, and M. Pop, "Differential abundance analysis for microbial marker-gene surveys," Nature Methods, vol. 10, no. 12, pp. 1200-1202, 2013.
R Core Team, R: a language and environment for statistical computing [Internet], Vienna, Austria, 2018, https://cran.rproject. org/doc/FAQ/R-FAQ.html#Citing-R.
W. Revelle, psych: procedures for psychological, psychometric, and personality research [Internet], Evanston, Illinois, 2018, https://cran.r-project.org/web/packages/psych/citation.html.
J. Oksanen, F. G. Blanchet, M. Friendly et al., "vegan: community ecology package [Internet]," 2018, https://cran.r-project .org/package=vegan.
H. Wickham, ggplot2: elegant graphics for data analysis [Internet], Springer-Verlag, New York, 2016, http://ggplot2.org.
T. Wei and V. Simko, "R package "corrplot": visualization of a correlation matrix [Internet]," 2017, https://github.com/ taiyun/corrplot.
W. Song, H. Park, J. M. Ha et al., "Discovery of glycocholic acid and taurochenodeoxycholic acid as phenotypic biomarkers in cholangiocarcinoma," Scientific Reports, vol. 8, no. 1, article 11088, 2018.
D. A. Kokova, S. Kostidis, J. Morello et al., "Exploratory metabolomics study of the experimental opisthorchiasis in a laboratory animal model (golden hamster, Mesocricetus auratus)," PLOS Neglected Tropical Diseases, vol. 11, no. 10, article e0006044, 2017.
A. Wahlström, P. Kovatcheva-Datchary, M. Ståhlman, F. Bäckhed, and H.-U. Marschall, "Crosstalk between bile acids and gut microbiota and its impact on farnesoid X receptor signalling," Digestive Diseases, vol. 35, no. 3, pp. 246-250, 2017.
N. Keren, F. M. Konikoff, Y. Paitan et al., "Interactions between the intestinal microbiota and bile acids in gallstones patients," Environmental Microbiology Reports, vol. 7, no. 6, pp. 874-880, 2015.
D. Ciocan, V. Rebours, C. S. Voican et al., "Characterization of intestinal microbiota in alcoholic patients with and without alcoholic hepatitis or chronic alcoholic pancreatitis," Scientific Reports, vol. 8, no. 1, article 4822, 2018.
L. Luo, J. Aubrecht, D. Li et al., "Assessment of serum bile acid profiles as biomarkers of liver injury and liver disease in humans," PLoS One, vol. 13, no. 3, article e0193824, 2018.
Z. Liu, Z. Zhang, M. Huang et al., "Taurocholic acid is an active promoting factor, not just a biomarker of progression of liver cirrhosis: evidence from a human metabolomic study and in vitro experiments," BMC Gastroenterology, vol. 18, no. 1, p. 112, 2018.
G. Xie, X. Wang, F. Huang et al., "Dysregulated hepatic bile acids collaboratively promote liver carcinogenesis," International Journal of Cancer, vol. 139, no. 8, pp. 1764-1775, 2016.
L. X. Lv, D. Q. Fang, D. Shi et al., "Alterations and correlations of the gut microbiome, metabolism and immunity in patients with primary biliary cirrhosis," Environmental Microbiology, vol. 18, no. 7, pp. 2272-2286, 2016.
M. Alvarez, C. Potel, L. Rey, T. Rodriguez-Sousa, and I. Otero, "Biliary tract infection caused by Haemophilus parainfluenzae," Scandinavian Journal of Infectious Diseases, vol. 31, pp. 212-213, 2009.
J. Friedl, A. Stift, G. A. Berlakovich et al., "Haemophilus parainfluenzae liver abscess after successful liver transplantation," Journal of Clinical Microbiology, vol. 36, no. 3, pp. 818-819, 1998.
P. S. Roland and D. W. Stroman, "Microbiology of acute otitis externa," The Laryngoscope, vol. 112, no. 7, pp. 1166-1177, 2009.
B. J. Paster, W. A. Falkler Jr., C. O. Enwonwu et al., "Prevalent bacterial species and novel phylotypes in advanced noma lesions," Journal of Clinical Microbiology, vol. 40, no. 6, pp. 2187-2191, 2002.
S. N. Buss, R. Starlin, and P. C. Iwen, "Bacteremia caused by Microbacterium binotii in a patient with sickle cell anemia," Journal of Clinical Microbiology, vol. 52, pp. 379-381, 2013.
A. Hirano, J. Umeno, Y. Okamoto et al., "Comparison of the microbial community structure between inflamed and noninflamed sites in patients with ulcerative colitis," Journal of Gastroenterology and Hepatology, vol. 33, no. 9, pp. 1590-1597, 2018.
H. Ohyama, K. Nakasho, K. Yamanegi et al., "An unusual autopsy case of pyogenic liver abscess caused by periodontal bacteria," Japanese Journal of Infectious Diseases, vol. 62, pp. 381-383, 2009.
Similar publications
Sorry the service is unavailable at the moment. Please try again later.
This website uses cookies to improve user experience. Read more
Save & Close
Accept all
Decline all
Show detailsHide details
Cookie declaration
About cookies
Strictly necessary
Performance
Strictly necessary cookies allow core website functionality such as user login and account management. The website cannot be used properly without strictly necessary cookies.
This cookie is used by Cookie-Script.com service to remember visitor cookie consent preferences. It is necessary for Cookie-Script.com cookie banner to work properly.
Performance cookies are used to see how visitors use the website, eg. analytics cookies. Those cookies cannot be used to directly identify a certain visitor.
Used to store the attribution information, the referrer initially used to visit the website
Cookies are small text files that are placed on your computer by websites that you visit. Websites use cookies to help users navigate efficiently and perform certain functions. Cookies that are required for the website to operate properly are allowed to be set without your permission. All other cookies need to be approved before they can be set in the browser.
You can change your consent to cookie usage at any time on our Privacy Policy page.