Complete Genome Sequence of a Novel Human Gammapapillomavirus Isolated from Skin

[en] A novel human papillomavirus (HPV ICB1) was fully characterized from a skin swab by using a sensitive degenerate PCR protocol combined with next-generation sequencing. The L1 open reading frame of HPV ICB1 shares 70.54% nucleotide homology with its closest relative, HPV164, and thus constitutes a novel human gammapapillomavirus.

Disciplines :

Immunology & infectious disease

Author, co-author :

Brancaccio, Rosario Nicola ; Université de Liège - ULiège > GIGA Stem Cells - Cancer Signaling

Robitaille, Alexis

Dutta, Sankhadeep

Rollison, Dana E

Fischer, Nicole

Grundhoff, Adam

Tommasino, Massimo

gheit, tarik

Language :

English

Title :

Complete Genome Sequence of a Novel Human Gammapapillomavirus Isolated from Skin

Publication date :

24 August 2017

Journal title :

Genome Announcements

eISSN :

2169-8287

Publisher :

American Society for Microbiology, United States - District of Columbia

Available on ORBi :

since 26 May 2021

Statistics

Number of views

44 (1 by ULiège)

Number of downloads

29 (1 by ULiège)

More statistics

Scopus citations^®

Scopus citations^®
without self-citations

OpenCitations

Bibliography

Antonsson A, Forslund O, Ekberg H, Sterner G, Hansson BG. 2000. The ubiquity and impressive genomic diversity of human skin papillomaviruses suggest a commensalic nature of these viruses. J Virol 74: 11636-11641. https://doi.org/10.1128/JVI.74.24.11636-11641.2000
Antonsson A, Erfurt C, Hazard K, Holmgren V, Simon M, Kataoka A, Hossain S, Håkangård C, Hansson BG. 2003. Prevalence and type spectrum of human papillomaviruses in healthy skin samples collected in three continents. J Gen Virol 84:1881-1886. https://doi.org/10.1099/vir .0.18836-0
Doorbar J. 2005. The papillomavirus life cycle. J Clin Virol 32:7-15. https://doi.org/10.1016/j.jcv.2004.12.006
Li L, Barry P, Yeh E, Glaser C, Schnurr D, Delwart E. 2009. Identification of a novel human Gammapapillomavirus species. J Gen Virol 90:2413-2417. https://doi.org/10.1099/vir.0.012344-0
de Villiers EM, Fauquet C, Broker TR, Bernard HU, zur Hausen H. 2004. Classification of papillomaviruses. Virology 324:17-27. https://doi.org/10 .1016/j.virol.2004.03.033
de Villiers EM, Gunst K. 2009. Characterization of seven novel human papillomavirus types isolated from cutaneous tissue, but also present in mucosal lesions. J Gen Virol 90:1999-2004. https://doi.org/10.1099/vir.0 .011478-0
Forslund O, Antonsson A, Nordin P, Stenquist B, Hansson BG. 1999. A broad range of human papillomavirus types detected with a general PCR method suitable for analysis of cutaneous tumours and normal skin. J Gen Virol 80:2437-2443. https://doi.org/10.1099/0022-1317-80-9-2437
de Villiers EM. 2013. Cross-roads in the classification of papillomaviruses. Virology 445:2-10. https://doi.org/10.1016/j.virol.2013.04.023
Van Doorslaer K, Li Z, Xirasagar S, Maes P, Kaminsky D, Liou D, Sun Q, Kaur R, Huyen Y, McBride AA. 2017. The papillomavirus Episteme: a major update to the papillomavirus sequence database. Nucleic Acids Res 45:D499-D506. https://doi.org/10.1093/nar/gkw879
Tommasino M. 2017. The biology of beta human papillomaviruses. Virus Res 231:128-138. https://doi.org/10.1016/j.virusres.2016.11.013
Wohlschlegel JA, Dwyer BT, Takeda DY, Dutta A. 2001. Mutational analysis of the Cy motif from p21 reveals sequence degeneracy and specificity for different cyclin-dependent kinases. Mol Cell Biol 21:4868-4874. https://doi.org/10.1128/MCB.21.15.4868-4874.2001