N. Segev Ypt and Rab GTPases: insight into functions through novel interactions Curr. Opin. Cell. Biol. 13 2001 500 511
J. Somsel Rodman, and A. Wandinger-Ness Rab GTPases coordinate endocytosis J. Cell Sci. 113 2000 183 192
H. Stenmark, and V.M. Olkkonen The Rab GTPase family Genome Biol. 2 2001 Reviews 3007
Y. Takai, T. Sasaki, and T. Matozaki Small GTP-binding proteins Physiol. Rev. 81 2001 153 208
M. Miaczynska, S. Christoforidis, A. Giner, A. Shevchenko, S. Uttenweiler-Joseph, B. Habermann, M. Wilm, R.G. Parton, and M. Zerial APPL proteins link Rab5 to nuclear signal transduction via an endosomal compartment Cell 116 2004 445 456
S. Polo, S. Pece, and P.P. Di Fiore Endocytosis and cancer Curr. Opin. Cell Biol. 16 2004 156 161
P.P. Di Fiore, and G. Scita Eps8 in the midst of GTPases Int. J. Biochem. Cell Biol. 34 2002 1178 1183
M. Miaczynska, L. Pelkmans, and M. Zerial Not just a sink: endosomes in control of signal transduction Curr. Opin. Cell Biol. 16 2004 400 406
S. Albert, E. Will, and D. Gallwitz Identification of the catalytic domains and their functionally critical arginine residues of two yeast GTPase-activating proteins specific for Ypt/Rab transport GTPases EMBO J. 18 1999 5216 5225
A. Rak, R. Fedorov, K. Alexandrov, S. Albert, R.S. Goody, D. Gallwitz, and A.J. Scheidig Crystal structure of the GAP domain of Gyp1p: first insights into interaction with Ypt/Rab proteins EMBO J. 19 2000 5105 5113
K. Scheffzek, M.R. Ahmadian, and A. Wittinghofer GTPase-activating proteins: helping hands to complement an active site Trends Biochem. Sci. 23 1998 257 262
A.F. Neuwald A shared domain between a spindle assembly checkpoint protein and Ypt/Rab-specific GTPase-activators Trends Biochem. Sci. 22 1997 243 244
S.D. Zhang, J. Kassis, B. Olde, D.M. Mellerick, and W.F. Odenwald Pollux, a novel Drosophila adhesion molecule, belongs to a family of proteins expressed in plants, yeast, nematodes, and man Genes Dev. 10 1996 1108 1119
C. Bizimungu, N. De Neve, A. Burny, S. Bach, F. Bontemps, D. Portetelle, and M. Vandenbol Expression in a RabGAP yeast mutant of two human homologues, one of which is an oncogene Biochem. Biophys. Res. Commun. 310 2003 498 504
J.M. Masuda-Robens, S.N. Kutney, H. Qi, and M.M. Chou The TRE17 oncogene encodes a component of a novel effector pathway for Rho GTPases Cdc42 and Rac1 and stimulates actin remodeling Mol. Cell. Biol. 23 2003 2151 2161
L. Martinu, J.M. Masuda-Robens, S.E. Robertson, L.C. Santy, J.E. Casanova, and M.M. Chou The TBC (Tre-2/Bub2/Cdc16) domain protein TRE17 regulates plasma membrane-endosomal trafficking through activation of Arf6 Mol. Cell. Biol. 24 2004 9752 9762
T. Nakamura, J. Hillova, R. Mariage-Samson, and M. Hill Molecular cloning of a novel oncogene generated by DNA recombination during transfection Oncogene Res. 2 1988 357 370
T. Nakamura, J. Hillova, R. Mariage-Samson, M. Onno, K. Huebner, L.A. Cannizzaro, L. Boghosian-Sell, C.M. Croce, and M. Hill A novel transcriptional unit of the tre oncogene widely expressed in human cancer cells Oncogene 7 1992 733 741
M. Otano-Joos, G. Mechtersheimer, S. Ohl, K.K. Wilgenbus, W. Scheurlen, T. Lehnert, F. Willeke, H.F. Otto, P. Lichter, and S. Joos Detection of chromosomal imbalances in leiomyosarcoma by comparative genomic hybridization and interphase cytogenetics Cytogenet. Cell Genet. 90 2000 86 92
A.M. Oliveira, B.L. Hsi, S. Weremowicz, A.E. Rosenberg, C.P. Dal, N. Joseph, J.A. Bridge, A.R. Perez-Atayde, and J.A. Fletcher USP6 (Tre2) fusion oncogenes in aneurysmal bone cyst Cancer Res. 64 2004 1920 1923
A.M. Oliveira, A.R. Perez-Atayde, C.P. Dal, M.C. Gebhardt, C.J. Chen, J.R. Neff, G.D. Demetri, A.E. Rosenberg, J.A. Bridge, and J.A. Fletcher Aneurysmal bone cyst variant translocations upregulate USP6 transcription by promoter swapping with the ZNF9, COL1A1, TRAP150, and OMD genes Oncogene 24 2005 3419 3426
C.A. Paulding, M. Ruvolo, and D.A. Haber The Tre2 (USP6) oncogene is a hominoid-specific gene Proc. Natl. Acad. Sci. USA. 100 2003 2507 2511
F.R. Papa, and M. Hochstrasser The yeast DOA4 gene encodes a deubiquitinating enzyme related to a product of the human tre-2 oncogene Nature 366 1993 313 319
L. Iwanejko, K.N. Smith, S. Loeillet, A. Nicolas, and F. Fabre Disruption and functional analysis of six ORFs on chromosome XV: YOL117w, YOL115w (TRF4), YOL114c, YOL112w (MSB4), YOL111c and YOL072w Yeast 15 1999 1529 1539
S. Bach, O. Bouchat, D. Portetelle, and M. Vandenbol Co-deletion of the MSB3 and MSB4 coding regions affects bipolar budding and perturbs the organization of the actin cytoskeleton Yeast 16 2000 1015 1023
E. Bi, J.B. Chiavetta, H. Chen, G.C. Chen, C.S. Chan, and J.R. Pringle Identification of novel, evolutionarily conserved Cdc42p-interacting proteins and of redundant pathways linking Cdc24p and Cdc42p to actin polarization in yeast Mol. Biol. Cell. 11 2000 773 793
S. Albert, and D. Gallwitz Two new members of a family of Ypt/Rab GTPase activating proteins. Promiscuity of substrate recognition J. Biol. Chem. 274 1999 33186 33189
S. Albert, and D. Gallwitz Msb4p, a protein involved in Cdc42p-dependent organization of the actin cytoskeleton, is a Ypt/Rab-specific GAP Biol. Chem. 381 2000 453 456
X.D. Gao, S. Albert, S.E. Tcheperegine, C.G. Burd, D. Gallwitz, and E. Bi The GAP activity of Msb3p and Msb4p for the Rab GTPase Sec4p is required for efficient exocytosis and actin organization J. Cell Biol. 162 2003 635 646
B. Matoskova, W.T. Wong, N. Seki, T. Nagase, N. Nomura, K.C. Robbins, and P.P. Di Fiore RN-tre identifies a family of tre-related proteins displaying a novel potential protein binding domain Oncogene 12 1996 2563 2571
L. Lanzetti, V. Rybin, M.G. Malabarba, S. Christoforidis, G. Scita, M. Zerial, and P.P. Di Fiore The Eps8 protein coordinates EGF receptor signalling through Rac and trafficking through Rab5 Nature 408 2000 374 377
L. Lanzetti, A. Palamidessi, L. Areces, G. Scita, and P.P. Di Fiore Rab5 is a signalling GTPase involved in actin remodelling by receptor tyrosine kinases Nature 429 2004 309 314
A. De Antoni, J. Schmitzova, H.H. Trepte, D. Gallwitz, and S. Albert Significance of GTP hydrolysis in Ypt1p-regulated endoplasmic reticulum to Golgi transport revealed by the analysis of two novel Ypt1-GAPs J. Biol. Chem. 277 2002 41023 41031
E. Will, and D. Gallwitz Biochemical characterization of Gyp6p, a Ypt/Rab-specific GTPase-activating protein from yeast J. Biol. Chem. 276 2001 12135 12139
C. Fairhead, B. Llorente, F. Denis, M. Soler, and B. Dujon New vectors for combinatorial deletions in yeast chromosomes and for gap-repair cloning using 'split-marker' recombination Yeast 12 1996 1439 1457
F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struhl Current Protocols in Molecular Biology 1987 Wiley New York
A. Adams, D.E. Gottschling, C.A. Kaiser, and T. Stearns Methods in Yeast Genetics first ed. 1997 Cold Spring Harbor Laboratory Press New York
M.J. Scanlan, J.D. Gordan, B. Williamson, E. Stockert, N.H. Bander, V. Jongeneel, A.O. Gure, D. Jager, E. Jager, A. Knuth, Y.T. Chen, and L.J. Old Antigens recognized by autologous antibody in patients with renal-cell carcinoma Int. J. Cancer 83 1999 456 464
A. Inga, and M.A. Resnick Novel human p53 mutations that are toxic to yeast can enhance transactivation of specific promoters and reactivate tumor p53 mutants Oncogene 20 2001 3409 3419
Y. Nakaya, T. Yamane, H. Shiraishi, H.Q. Wang, E. Matsubara, T. Sato, G. Dolios, R. Wang, B. De Strooper, M. Shoji, H. Komano, K. Yanagisawa, Y. Ihara, P. Fraser, P. St George-Hyslop, and M. Nishimura Random mutagenesis of presenilin-1 identifies novel mutants exclusively generating long amyloid beta-peptides J. Biol. Chem. 280 2005 19070 19077
J. Liu, H. Tan, and B. Rost Loopy proteins appear conserved in evolution J. Mol. Biol. 322 2002 53 64
N. Pandey, M. Ganapathi, K. Kumar, D. Dasgupta, S.K. Das Sutar, and D. Dash Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins Bioinformatics 20 2004 2904 2910
L.M. Iakoucheva, C.J. Brown, J.D. Lawson, Z. Obradovic, and A.K. Dunker Intrinsic disorder in cell-signalling and cancer-associated proteins J. Mol. Biol. 323 2002 573 584
X. Gallet, B. Charloteaux, A. Thomas, and R. Brasseur A fast method to predict protein interaction sites from sequences J. Mol. Biol. 302 2000 917 926