Characterization of Microsatellite Markers in the African Tropical Tree Species Guibourtia ehie (Fabaceae, Detarioideae)

Tosso, Dji-ndé Félicien; Doucet, Jean-Louis; Migliore, J.; Daïnou, Kasso; Kaymak, E.; Kameni, F. S. M.; Hardy, O. J.

doi:10.3732/apps.1700023

Article (Scientific journals)

Characterization of Microsatellite Markers in the African Tropical Tree Species Guibourtia ehie (Fabaceae, Detarioideae)

Tosso, Dji-ndé Félicien; Doucet, Jean-Louis; Migliore, J. et al.

2017 • In Applications in Plant Sciences, 5 (7)

Peer Reviewed verified by ORBi

Permalink
https://hdl.handle.net/2268/252777

DOI
10.3732/apps.1700023

Files (1)Send to Details Statistics Bibliography Similar publications

Files

Full Text

Tosso et al._BioOne_2017.pdf

Publisher postprint (533.2 kB)

Request a copy

All documents in ORBi are protected by a user license.

Send to

RIS BibTex APA Chicago Permalink X Linkedin

Details

Keywords :

Fabaceae; Guibourtia ehie

Abstract :

[en] Premise of the study: Microsatellite primers (simple sequence repeats [SSRs]) were developed in Guibourtia ehie (Fabaceae, Detarioideae) to study population genetic structure and the history of African vegetation. Methods and Results: We isolated 18 polymorphic SSRs from a nonenriched genomic library. This set of primer pairs was tested on four populations, and the results showed two to 16 alleles per locus with mean observed and expected heterozygosities of 0.27 ± 0.05 and 0.57 ± 0.05, respectively. Cross-amplification tests in 13 congeneric species were successful for the four taxa belonging to the subgenus Gorskia. Conclusions: This set of microsatellite markers will be useful to investigate the phylogeography and population genetics of G. ehie, a key representative of African semideciduous moist forests. © 2017 Tosso et al. Published by the Botanical Society of America.

Disciplines :

Phytobiology (plant sciences, forestry, mycology...)
Genetics & genetic processes

Author, co-author :

Tosso, Dji-ndé Félicien ; Central African Forests, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, Université de Liège, Passage des Déportés 2, Gembloux, Belgium, Evolutionary Biology and Ecology Unit, CP 160/12, Faculté des Sciences, Université Libre de Bruxelles, Av. F. D. Roosevelt 50, Brussels, Belgium

Doucet, Jean-Louis ; Université de Liège - ULiège > Ingénierie des biosystèmes (Biose) > Laboratoire de Foresterie des régions trop. et subtropicales

Migliore, J.; Evolutionary Biology and Ecology Unit, CP 160/12, Faculté des Sciences, Université Libre de Bruxelles, Av. F. D. Roosevelt 50, Brussels, Belgium

Daïnou, Kasso ; Université de Liège - ULiège > Ingénierie des biosystèmes (Biose) > Laboratoire de Foresterie des régions trop. et subtropicales

Kaymak, E.; Evolutionary Biology and Ecology Unit, CP 160/12, Faculté des Sciences, Université Libre de Bruxelles, Av. F. D. Roosevelt 50, Brussels, Belgium

Kameni, F. S. M.; Evolutionary Biology and Ecology Unit, CP 160/12, Faculté des Sciences, Université Libre de Bruxelles, Av. F. D. Roosevelt 50, Brussels, Belgium

Hardy, O. J.; Evolutionary Biology and Ecology Unit, CP 160/12, Faculté des Sciences, Université Libre de Bruxelles, Av. F. D. Roosevelt 50, Brussels, Belgium

Language :

English

Title :

Characterization of Microsatellite Markers in the African Tropical Tree Species Guibourtia ehie (Fabaceae, Detarioideae)

Publication date :

2017

Journal title :

Applications in Plant Sciences

eISSN :

2168-0450

Publisher :

Botanical Society of America Inc.

Volume :

Issue :

Peer reviewed :

Peer Reviewed verified by ORBi

Available on ORBi :

since 19 November 2020

Statistics

Number of views

67 (3 by ULiège)

Number of downloads

3 (3 by ULiège)

More statistics

Scopus citations^®

Scopus citations^®
without self-citations

OpenCitations

Bibliography

Chybicki, I. J., and J. Burczyk. 2009. Simultaneous estimation of null alleles and inbreeding coefficients. Journal of Heredity 100: 106-113.
Fu, X., Y. Huang, S. Deng, R. Zhou, G. Yang, X. Ni, W. Li, and S. Shi. 2005. Construction of a SSH library of Aegiceras corniculatum under salt stress and expression analysis of four transcripts. Plant Science 169: 147-154.
Hardy, O. J., and X. Vekemans. 2002. SPAGeDi: A versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes 2: 618-620.
Hawthorne, W. D. 1995. Ecological profiles of Ghanaian forest trees. Tropical Forestry Papers 29. Oxford Forestry Institute, Oxford, United Kingdom.
Holleley, C. E., and P. G. Geerts. 2009. Multiplex Manager 1.0: A crossplatform computer program that plans and optimizes multiplex PCR. BioTechniques 46: 511-517.
Lemmens, R. H. M. J., D. Loupp e, and A. A. Oteng-Amoako. 2008. Bois d'oeuvre, vol. 2. PROTA, Wageningen, The Netherlands.
Mariac, C., N. Scarcelli, J. Pouzadou, A. Barnaud, C. Billot, A. Faye, A. Kougbeadj o, et al. 2014. Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies. Molecular Ecology Resources 14: 1103-1113.
Masella, A. P., A. K. Bartram, J. M. Truszkowski, D. G. Brown, and J. D. Neufeld. 2012. PANDAseq: Paired-end assembler for Illumina sequences. BMC Bioinformatics 13: 31.
Megl?cz, E., N. Pech, A. Gilles, V. Dubut, P. Hingamp, A. Trilles, R. Grenier, and J. F. Martin. 2014. QDD version 3.1: A user-friendly computer program for microsatellite selection and primer design revisited: Experimental validation of variables determining genotyping success rate. Molecular Ecology Resources 14: 1302-1313.
Micheneau, C., G. Dauby, N. Bourland, J.-L. Doucet, and O. J. Hardy. 2011. Development and characterization of microsatellite loci in Pericopsis elata (Fabaceae) using a cost-efficient approach. American Journal of Botany 98: e268-e270.
Salzmann, U., and P. Hoelzmann. 2005. The Dahomey Gap: An abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene. Holocene 15: 190-199.
Tosso, F., K. Da?nou, O. J. Hardy, B. Sinsin, and J.-L. Doucet. 2015. Le genre Guibourtia Benn., un taxon ? haute valeur commerciale et soci?tale (synth?se bibliographique). Biotechnologie, Agronomie, Soci?t? et Environnement 19: 71-88.
Tosso, F., J.-L. Doucet, E. Kaymak, K. Da?nou, J. Duminil, and O. J. Hardy. 2016. Microsatellite development for the genus Guibourtia (Fabaceae, Caesalpinioideae) reveals diploid and polyploid species. Applications in Plant Sciences 4: 1600029.