Article (Scientific journals)
Panel-Based Exome Sequencing for Neuromuscular Disorders as a Diagnostic Service.
Westra, Dineke; Schouten, Meyke I.; Stunnenberg, Bas C. et al.
2019In Journal of Neuromuscular Diseases, 6 (2), p. 241-258
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Keywords :
Adolescent; Adult; Aged; Child; Child, Preschool; Female; Humans; Infant; Infant, Newborn; Male; Middle Aged; Neuromuscular Diseases/diagnosis/genetics; Whole Exome Sequencing/methods; Young Adult; Neuromuscular diseases; exome sequencing; genetics; myopathies; neurology
Abstract :
[en] BACKGROUND: Neuromuscular disorders (NMDs) are clinically and genetically heterogeneous. Accurate molecular genetic diagnosis can improve clinical management, provides appropriate genetic counseling and testing of relatives, and allows potential therapeutic trials. OBJECTIVE: To establish the clinical utility of panel-based whole exome sequencing (WES) in NMDs in a population with children and adults with various neuromuscular symptoms. METHODS: Clinical exome sequencing, followed by diagnostic interpretation of variants in genes associated with NMDs, was performed in a cohort of 396 patients suspected of having a genetic cause with a variable age of onset, neuromuscular phenotype, and inheritance pattern. Many had previously undergone targeted gene testing without results. RESULTS: Disease-causing variants were identified in 75/396 patients (19%), with variants in the three COL6-genes (COL6A1, COL6A2 and COL6A3) as the most common cause of the identified muscle disorder, followed by variants in the RYR1 gene. Together, these four genes account for almost 25% of cases in whom a definite genetic cause was identified. Furthermore, likely pathogenic variants and/or variants of uncertain significance were identified in 95 of the patients (24%), in whom functional and/or segregation analysis should be used to confirm or reject the pathogenicity. In 18% of the cases with a disease-causing variant of which we received additional clinical information, we identified a genetic cause in genes of which the associated phenotypes did not match that of the patients. Hence, the advantage of panel-based WES is its unbiased approach. CONCLUSION: Whole exome sequencing, followed by filtering for NMD genes, offers an unbiased approach for the genetic diagnostics of NMD patients. This approach could be used as a first-tier test in neuromuscular disorders with a high suspicion of a genetic cause. With uncertain results, functional testing and segregation analysis are needed to complete the evidence.
Disciplines :
Genetics & genetic processes
Author, co-author :
Westra, Dineke
Schouten, Meyke I.
Stunnenberg, Bas C.
Kusters, Benno
Saris, Christiaan G. J.
Erasmus, Corrie E.
van Engelen, Baziel G.
BULK, Saskia ;  Centre Hospitalier Universitaire de Liège - CHU > Unilab > Clinique de génétique
Verschuuren-Bemelmans, Corien C.
Gerkes, E. H.
de Geus, Christa
van der Zwaag, P. A.
Chan, Sophelia
Chung, Brian
Barge-Schaapveld, Daniela Q. C. M.
Kriek, Marjolein
Sznajer, Yves
van Spaendonck-Zwarts, Karin
van der Kooi, Anneke J.
Krause, Amanda
Schonewolf-Greulich, Bitten
de Die-Smulders, Christine
Sallevelt, Suzanne C. E. H.
Krapels, Ingrid P. C.
Rasmussen, Magnhild
Maystadt, Isabelle
Kievit, Anneke J. A.
Witting, Nanna
Pennings, Maartje
Meijer, Rowdy
Gillissen, Christian
Kamsteeg, Erik-Jan
Voermans, Nicol C.
More authors (23 more) Less
Language :
English
Title :
Panel-Based Exome Sequencing for Neuromuscular Disorders as a Diagnostic Service.
Publication date :
2019
Journal title :
Journal of Neuromuscular Diseases
ISSN :
2214-3599
eISSN :
2214-3602
Publisher :
IOS Press, Amsterdam, Netherlands
Volume :
6
Issue :
2
Pages :
241-258
Peer reviewed :
Peer Reviewed verified by ORBi
Available on ORBi :
since 07 January 2020

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