Article (Scientific journals)
Seleção genômica ampla para curvas de crescimento
Fonseca e Silva, Fabyano; Rocha, Gilson Silvério; Vilela de Resende, Marcos Deon et al.
2013In Arquivo Brasileiro de Medicina Veterinaria e Zootecnia, 65 (5), p. 1519-1526
Peer reviewed
 

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Keywords :
SNP; Bayesian LASSO; longitudinal data
Abstract :
[en] A methodology was proposed for the genetic evaluation of growth curves considering SNP (Single Nucleotide Polymorphisms) markers. At the first step, nonlinear regression growth models (Logistic) were fitted to the weight-age of each animal, and on second step the parameter estimates of the Logistic model were used as phenotype in a regression model (Bayesian LASSO - BL) which covariates were given by SNP genotypes. This approach allows the estimation of GBV (Genomic Breeding Values) for weight at either time of growth trajectory, allowing also the production of genomic growth curves, which selected groups of individuals with larger growth efficiency. The simulated data set was constituted of 2,000 individuals (being 1,000 in the training and 1,000 in the validation population) each one with 453 SNP markers distributed along 5 chromosomes. The results indicated high efficiency of the BL method to predict GBV in the validation population using information from the training population (correlation coefficients varying between 0.79 and 0.93). The BL also presented high efficiency to detect QTL, once the most expressive estimated SNP effects were located at positions closed to true QTL position fixed in the simulation.
Disciplines :
Animal production & animal husbandry
Author, co-author :
Fonseca e Silva, Fabyano
Rocha, Gilson Silvério
Vilela de Resende, Marcos Deon
Facioni Guimarães, Simone Eliza
Peternelli, Luiz Alexandre
Souza Duarte, Darlene Ana ;  Université de Liège - ULiège > Agronomie, Bio-ingénierie et Chimie (AgroBioChem) > Ingénierie des productions animales et nutrition
Azevedo, Camila Ferreira
Language :
Portuguese
Title :
Seleção genômica ampla para curvas de crescimento
Alternative titles :
[en] Genome Wide Selection for growth curves
Publication date :
October 2013
Journal title :
Arquivo Brasileiro de Medicina Veterinaria e Zootecnia
ISSN :
0102-0935
eISSN :
1678-4162
Publisher :
Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
Volume :
65
Issue :
5
Pages :
1519-1526
Peer reviewed :
Peer reviewed
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