T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
Carbone, Ignazio; White, James B; Miadlikowska, Jolantaet al.
2019 • In Microbiology Resource Announcements, 8 (29), p. 00328-19
[en] The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.
Disciplines :
Microbiology
Author, co-author :
Carbone, Ignazio; North Carolina State University
White, James B; North Carolina State University
Miadlikowska, Jolanta; Duke University
Arnold, A Elizabeth; University of Arizona
Miller, Mark A; University of California, San Diego
Magain, Nicolas ; Université de Liège - ULiège > Département de Biologie, Ecologie et Evolution > Biologie de l'évolution et de la conservation - aCREA-Ulg
U'Ren, Jana; University of Arizona
Lutzoni, François; Duke University
Language :
English
Title :
T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
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