Lassois, Ludivine ; Université de Liège - ULiège > Ingénierie des biosystèmes (Biose) > Gestion des ressources forestières et des milieux naturels
Monty, Arnaud ; Université de Liège - ULiège > Ingénierie des biosystèmes (Biose) > Biodiversité et Paysage
Verdu, Cindy ; Université de Liège - ULiège > Forêts, Nature et Paysage > Gestion des ressources forestières et des milieux naturels
Mariette, S
Porté, Annabel
Language :
English
Title :
No evidence for genetic differentiation in juvenile traits between belgian and french populations of the invasive tree Robinia pseudoacacia
Publication date :
March 2018
Journal title :
Plant Ecology and Evolution
ISSN :
2032-3913
eISSN :
2032-3921
Publisher :
Nationale Plantentuin van België, Belgium
Volume :
151
Pages :
5-17
Peer reviewed :
Peer Reviewed verified by ORBi
Name of the research project :
ANR-10-EQPX-16 Xyloforest
Funders :
ANR - Agence Nationale de la Recherche
Funding text :
This study has been carried out with financial support from the French National Research Agency (ANR) in the frame of the Investments for the future Program, within the Cluster of Excellence COTE (ANR-10-LABX-45). This study was funded by the ANR-10-EQPX-16 Xyloforest.
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Bibliography
Agrawal A.A. (2001) Phenotypic plasticity in the interactions and evolution of species. Science 294: 321–326. https://doi. org/10.1126/science.1060701
Barrett S.C.H., Colautti R.I., Eckert C.G. (2008) Plant reproductive systems and evolution during biological invasion. Molecular Ecology 17: 373–383. https://doi.org/10.1111/j.1365-294X.2007.03503.x
Blair A.C., Wolfe L.M. (2004) The evolution of an invasive plant: an experimental study with Silene latifolia. Ecology 85: 3035– 3042. https://doi.org/10.1890/04-0341
Bonner F.T., Karrfalt R.P. (2008) The woody plant seed manual. Agriculture Handbook 727. Washington, D.C., U.S. Department of Agriculture, Forest Service.
Bouteiller X.P., Porté A.J., Mariette S., Monty A. (2017) Using automated sanding to homogeneously break seed dormancy in black locust (Robinia pseudoacacia L., Fabaceae). Seed Science Research 27: 243–250. https://doi.org/10.1017/S0960258517000150
Burns R.M., Honkala B. (1990) Silvics of North America: 2. Hardwoods. Agriculture Handbook 654. Washington, D.C., U.S. Department of Agriculture, Forest Service.
Chhatre V.E., Emerson K.J. (2017) StrAuto: automation and paral-lelization of STRUCTURE analysis. BMC Bioinformatics 18: 192. https://doi.org/10.1186/s12859-017-1593-0
Chun Y.J., Nason J.D., Moloney K.A. (2009) Comparison of quantitative and molecular genetic variation of native vs. invasive populations of purple loosestrife (Lythrum salicaria L., Lythraceae). Molecular Ecology 18: 3020–3035. https://doi. org/10.1111/j.1365-294X.2009.04254.x
Chun Y.J., Le Corre V., Bretagnolle F. (2011) Adaptive divergence for a fitness-related trait among invasive Ambrosia artemisiifo-lia populations in France. Molecular Ecology 20: 1378–1388. https://doi.org/10.1111/j.1365-294X.2011.05013.x
Cierjacks A., Kowarik I., Joshi J., Hempel S., Ristow M., von der Lippe M., Weber E. (2013) Biological Flora of the British Isles: Robinia pseudoacacia. Journal of Ecology 101: 1623–1640. https://doi.org/10.1111/1365-2745.12162
Colautti R.I., Barrett S.C.H. (2013) Rapid adaptation to climate facilitates range expansion of an invasive plant. Science 342: 364–366. https://doi.org/10.1126/science.1242121
Colautti R.I., Lau J.A. (2015) Contemporary evolution during invasion: evidence for differentiation, natural selection, and local adaptation. Molecular Ecology 24: 1999–2017. https://doi. org/10.1111/mec.13162
Coutts S.R., van Klinken R.D., Yokomizo H., Buckley Y.M. (2011) What are the key drivers of spread in invasive plants: dispersal, demography or landscape: and how can we use this knowledge to aid management? Biological Invasions 13: 1649–1661. htt-ps://doi.org/10.1007/s10530-010-9922-5
DAISIE (2009) Handbook of alien species in Europe. Dordrecht, Springer series in invasion ecology. https://doi.org/10.1007/978-1-4020-8280-1
Davidson A.M., Jennions M., Nicotra A.B. (2011) Do invasive species show higher phenotypic plasticity than native species and, if so, is it adaptive? A meta-analysis. Ecology Letters 14: 419– 431. https://doi.org/10.1111/j.1461-0248.2011.01596.x
De Frenne P., Graae B.J., Kolb A., Brunet J., Chabrerie O., Cousins S.A.O., Decocq G., Dhondt R., Diekmann M., Eriksson O., Heinken T., Hermy M., Jõgar Ü., Saguez R., Shevtsova A., Stanton S., Zindel R., Zobel M., Verheyen K. (2010) Significant effects of temperature on the reproductive output of the forest herb Anemone nemorosa L. Forest Ecology and Management 259: 809–817. https://doi.org/10.1016/j.foreco.2009.04.038
Dlugosch K.M., Parker I.M. (2008) Invading populations of an ornamental shrub show rapid life history evolution despite genetic bottlenecks. Ecology Letters 11: 701–709. https://doi. org/10.1111/j.1461-0248.2008.01181.x
Donohue K., Dorn L., Griffith C., Kim E., Aguilera A., Polisetty C.R., Schmitt J. (2005) The evolutionary ecology of seed germination of Arabidopsis thaliana: variable natural selection on germination timing. Evolution 59: 758–770. https://doi. org/10.1111/j.0014-3820.2005.tb01751.x
Donohue K., Rubio de Casas R., Burghardt L., Kovach K., Willis C.G. (2010) Germination, postgermination adaptation, and species ecological ranges. Annual Review of Ecology, Evolution, and Systematics 41: 293–319. https://doi.org/10.1146/annurev-ecolsys-102209-144715
Earl D.A., vonHoldt B.M. (2012) STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources 4: 359–361. https://doi.org/10.1007/s12686-011-9548-7
Ebeling S.K., Stöcklin J., Hensen I., Auge H. (2011) Multiple common garden experiments suggest lack of local adaptation in an invasive ornamental plant. Journal of Plant Ecology 4: 209– 220. https://doi.org/10.1093/jpe/rtr007
Eriksen R.L., Desronvil T., Hierro J.L., Kesseli R. (2012) Morphological differentiation in a common garden experiment among native and non-native specimens of the invasive weed yellow starthistle (Centaurea solstitialis). Biological Invasions 14: 1459–1467. https://doi.org/10.1007/s10530-012-0172-6
Evanno G., Regnaut S., Goudet J. (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14: 2611–2620. https://doi. org/10.1111/j.1365-294X.2005.02553.x
Fick S.E., Hijmans R.J. (2017) Worldclim 2: new 1-km spatial resolution climate surfaces for global land areas. International Journal of Climatology. Available from http://worldclim.org/version2 [accessed 6 Dec. 2017].
Forest Research (2015) Seed storage and pretreatment for Robinia pseudoacacia [online]. Available from https://www.forestry.gov. uk/fr/infd-7fachj [accessed 10 Feb. 2015].
Genty B., Briantais J.-M., Baker N.R. (1989) The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence. Biochimica et Biophysica Acta 990: 87–92. https://doi.org/10.1016/S0304-4165(89)80016-9
Gioria M., Pyšek P. (2017) Early bird catches the worm: germination as a critical step in plant invasion. Biological Invasions 19: 1055–1080. https://doi.org/10.1007/s10530-016-1349-1
Goudet J., Büchi L. (2006) The effects of dominance, regular inbreeding and sampling design on QST, an estimator of population differentiation for quantitative traits. Genetics 172: 1337– 1347. https://doi.org/10.1534/genetics.105.050583
Hendry A.P. (2002) QST > = ≠
Heywood V.H. (1989) Patterns, extents and modes of invasions by terrestrial plants. In: Drake J.A. et al. (eds) Biology invasions: a global perspective: 31–60. Chichester, Wiley.
Holsinger K.E. (1999) Analysis of genetic diversity in geographically structured populations: a Bayesian perspective. Hereditas 130: 245–255. https://doi.org/10.1111/j.1601-5223.1999.00245.x
Hyldgaard B., Brix H. (2012) Intraspecies differences in phenotypic plasticity: invasive versus non-invasive populations of Cera-tophyllum demersum. Aquatic Botany 97: 49–56. https://doi. org/10.1016/j.aquabot.2011.11.004
Isik F. (2009) Analysis of half-sib progeny tests in forestry. SAS Paper 1–45. Available from http://www4.ncsu.edu/~fisik/Anal-ysis%20of%20Half-sib%20Progeny%20Test%20Data%20 in%20Forestry.pdf [accessed 9 Jan. 2018].
Iverson L.R., Prasad A.M. (1998) Predicting abundance of 80 tree species following climate change in the eastern United States. Ecological Monographs 68: 465–485. https://doi. org/10.1890/0012-9615(1998)068[0465:PAOTSF]2.0.CO;2
Johansen P.P., Andersen J.D., Børsting C., Morling N. (2013) Evaluation of the iPLEX® Sample ID Plus Panel designed for the Sequenom MassARRAY® system. A SNP typing assay developed for human identification and sample tracking based on the SNP for ID panel. Forensic Science International: Genetics 7: 482–487. https://doi.org/10.1016/j.fsigen.2013.04.009
Jombart T. (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 24: 1403–1405. https://doi.org/10.1093/bioinformatics/btn129
Jombart T., Pontier D., Dufour A.-B. (2009) Genetic markers in the playground of multivariate analysis. Heredity 102: 330–341. https://doi.org/10.1038/hdy.2008.130
Keller S.R., Taylor D.R. (2008) History, chance and adaptation during biological invasion: separating stochastic phenotypic evolution from response to selection. Ecology Letters 11: 852–866. https://doi.org/10.1111/j.1461-0248.2008.01188.x
Kopelman N.M., Mayzel J., Jakobsson M., Rosenberg N.A., May-rose I. (2015) CLUMPAK: a program for identifying clustering modes and packaging population structure inferences across K. Molecular Ecology Resources 15: 1179–1191. https://doi. org/10.1111/1755-0998.12387
Koskinen M.T., Haugen T.O., Primmer C.R. (2002) Contemporary fisherian life-history evolution in small salmonid populations. Nature 419: 826–830. https://doi.org/10.1038/nature01029
Kruschke J.K. (2014) Doing Bayesian data analysis: a tutorial with R, JAGS, and Stan. 2nd Ed. Boston, Academic Press.
Lamarque L.J., Lortie C.J., Porté A.J., Delzon S. (2015) Genetic differentiation and phenotypic plasticity in life-history traits between native and introduced populations of invasive maple trees. Biological Invasions 17: 1109–1122. https://doi. org/10.1007/s10530-014-0781-3
Lavergne S., Molofsky J. (2007) Increased genetic variation and evolutionary potential drive the success of an invasive grass. Proceedings of the National Academy of Sciences of the United States of America 104: 3883–3888. https://doi.org/10.1073/pnas.0607324104
Lee C.E. (2002) Evolutionary genetics of invasive species. Trends in Ecology & Evolution 17: 386–391. https://doi.org/10.1016/S0169-5347(02)02554-5
Leger E.A., Rice K.J. (2007) Assessing the speed and predictability of local adaptation in invasive California poppies (Eschscholzia californica). Journal of Evolutionary Biology 20: 1090–1103. https://doi.org/10.1111/j.1420-9101.2006.01292.x
Leinonen T., McCairns R.J.S., O’Hara R.B., Merilä J. (2013) QST – FST comparisons: evolutionary and ecological insights from genomic heterogeneity. Nature Reviews Genetics 14: 179–190. https://doi.org/10.1038/nrg3395
Maron J.L., Vilà M., Bommarco R., Elmendorf S., Beardsley P. (2004) Rapid evolution of an invasive plant. Ecological Monographs 74: 261–280. https://doi.org/10.1890/03-4027
Maron J.L., Elmendorf S.C., Vilà M. (2007) Contrasting plant physiological adaptation to climate in the native and introduced range of Hypericum perforatum. Evolution 61: 1912–1924. htt-ps://doi.org/10.1111/j.1558-5646.2007.00153.x
Matesanz S., Horgan-Kobelski T., Sultan S.E. (2012) Phenotypic plasticity and population differentiation in an ongoing species invasion. PLoS One 7: e44955. https://doi.org/10.1371/journal. pone.0044955
Merilä J., Crnokrak P. (2001) Comparison of genetic differentiation at marker loci and quantitative traits. Journal of Evolutionary Biology 14: 892–903. https://doi.org/10.1046/j.1420-9101.2001.00348.x
Molina-Montenegro M.A., Naya D.E. (2012) Latitudinal patterns in phenotypic plasticity and fitness-related traits: assessing the Climatic Variability Hypothesis (CVH) with an invasive plant species. PLoS One 7: e47620. https://doi.org/10.1371/journal. pone.0047620
Monty A., Bizoux J.-P., Escarré J., Mahy G. (2013) Rapid plant invasion in distinct climates involves different sources of pheno- typic variation. PLoS ONE 8: e55627. https://doi.org/10.1371/journal.pone.0055627
O’Hara R.B., Merilä J. (2005) Bias and precision in QST estimates: problems and some solutions. Genetics 171: 1331–1339. htt-ps://doi.org/10.1534/genetics.105.044545
Ovaskainen O., Karhunen M., Zheng C., Arias J.M.C., Merilä J. (2011) A new method to uncover signatures of divergent and stabilizing selection in quantitative traits. Genetics 189: 621– 632. https://doi.org/10.1534/genetics.111.129387
Pimentel D., McNair S., Janecka J., Wightman J., Simmonds C., O’Connell C., Wong E., Russel L., Zern J., Aquino T., Tso-mondo T. (2001) Economic and environmental threats of alien plant, animal, and microbe invasions. Agriculture, Ecosystems & Environment 84: 1–20. https://doi.org/10.1016/S0167-8809(00)00178-X
Plummer M. (2005) JAGS: a program for analysis of Bayesian graphical models using Gibbs sampling. In: Hornik K., Leisch F., Zeileis A. (eds) Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003), March 20–22, 2003, Technische Universität Wien, Vienna, Austria. Available from https://www.r-project.org/conferences/DSC-2003/Proceedings/Plummer.pdf [accessed 9 Jan. 2018].
Postma F.M., Ågren J. (2016) Early life stages contribute strongly to local adaptation in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 113: 7590–7595. https://doi.org/10.1073/pnas.1606303113
Prentice I.C., Cramer W., Harrison S.P., Leemans R., Monse-rud R.A., Solomon A.M. (1992) A global biome model based on plant physiology and dominance, soil properties and climate. Journal of Biogeography 19: 117–134. https://doi. org/10.2307/2845499
Prentis P.J., Wilson J.R.U., Dormontt E.E., Richardson D.M., Lowe A.J. (2008) Adaptive evolution in invasive species. Trends in Plant Science 13: 288–294. https://doi.org/10.1016/j. tplants.2008.03.004
Pritchard J.K., Stephens M., Donnelly P.J. (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945–949.
R Development Core Team (2015) R: a language and environment for statistical computing. Available from https://www.r-project. org/[accessed 2 Jan. 2018].
Raymond M., Rousset F. (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86: 248–249. https://doi.org/10.1093/oxfordjour-nals.jhered.a111573
Richards C.L., Bossdorf O., Muth N.Z., Gurevitch J., Pigliucci M. (2006) Jack of all trades, master of some? On the role of phenotypic plasticity in plant invasions. Ecology Letters 9: 981–993. https://doi.org/10.1111/j.1461-0248.2006.00950.x
Rousset F. (2008) GENEPOP’007: a complete re-implementation of the GENEPOP software for Windows and Linux. Molecular Ecology Resources 8: 103–106. https://doi.org/10.1111/j.1471-8286.2007.01931.x
Royal Botanic Gardens Kew (2015) Seed Information Database. Available from http://data.kew.org/sid/[accessed 10 Feb. 2015].
Santiso X., López L., Gilbert K.J., Barreiro R., Whitlock M.C., Retuerto R. (2015) Patterns of genetic variation within and among populations in Arbutus unedo and its relation with selection and evolvability. Perspectives in Plant Ecology, Evolution and Systematics 17: 185–192. https://doi.org/10.1016/j. ppees.2015.02.006
Spitze K. (1993) Population structure in Daphnia obtusa: quantitative genetic and allozymic variation. Genetics 135: 367–374.
Su Y., Yajima M. (2012) R2jags: a package for running jags from R. Available from https://cran.r-project.org/web/packages/R2jags/index.html [accessed 2 Jan. 2018].
Valladares F., Sanchez-Gomez D., Zavala M.A. (2006) Quantitative estimation of phenotypic plasticity: bridging the gap between the evolutionary concept and its ecological applications. Journal of Ecology 94: 1103–1116. https://doi.org/10.1111/j.1365-2745.2006.01176.x
Verdu C.F., Guichoux E., Quevauvillers S., De Thier O., Laizet Y., Delcamp A., Gévaudant F., Monty A., Porté A.J., Lejeune P., Lassois L., Mariette S. (2016) Dealing with paralogy in RAD-seq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacacia L. Ecology and Evolution 6: 7323–7333. https://doi.org/10.1002/ece3.2466
Vítková M., Müllerová J., Sádlo J., Pergl J., Pyšek P. (2017) Black locust (Robinia pseudoacacia) beloved and despised: a story of an invasive tree in Central Europe. Forest Ecology and Management 384: 287–302. https://doi.org/10.1016/j. foreco.2016.10.057
Vitousek P.M., D’Antonio C.M., Loope L.L., Westbrooks R. (1996) Biological invasions as global environmental changes. American Scientist 84: 468–478.
Vitousek P.M., D’Antonio C.M., Loope L.L., Rejmánek M., Westbrooks R. (1997) Introduced species: a significant component of human-caused global change. New Zealand Journal of Ecology 21: 1–16.
Wainwright C.E., Cleland E.E. (2013) Exotic species display greater germination plasticity and higher germination rates than native species across multiple cues. Biological Invasions 15: 2253–2264. https://doi.org/10.1007/s10530-013-0449-4
Walck J.L., Hidayati S.N., Dixon K.W., Thompson K., Poschlod P. (2011) Climate change and plant regeneration from seed. Global Change Biology 17: 2145–2161. https://doi.org/10.1111/j.1365-2486.2010.02368.x
Ward J.H. (1963) Hierarchical grouping to optimize an objective function. Journal of the American Statistical Association. 58: 236–244. https://doi.org/10.1080/01621459.1963.10500845
Whitlock M.C. (1999) Neutral additive genetic variance in a metapopulation. Genetical Research 74: 215–221. https://doi. org/10.1017/S0016672399004127
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