[en] Tools that will enable the assessment of agricultural soil quality and include measurements of biological indicators, such as soil respiration or N mineralization, are increasingly in demand. Such tools require the establishment of reference systems to provide comparative ‘baseline’ or ‘normal’ values. In this study, we measured the spatial and seasonal variability of eight biological indicators (including two eco-physiological quotients) in order to establish a reference system at the regional level of Wallonia (Southern Belgium).
Respiration potential, microbial biomass carbon, microbial C/N ratio, net nitrogen mineralisation, metabolic potential of soil bacteria, earthworm abundance, microbial quotient, and metabolic quotient were measured at 60 sites across contrasting agricultural regions (different soil types and climate) in both grasslands and croplands. Additionally, the same biological indicators were measured four times during the vegetation period (April, June, August, and October) in 11 cropland sites to assess seasonal variability. Reference ranges were defined for each biological indicator, based on the addition of variances (seasonal and spatial) and the calculation of cumulative distribution functions.
Land use was the most useful classification variable to define a reference system in Wallonia. Two separate reference systems, one for grasslands and one for croplands, were thus appropriate for Wallonia. Sampling season had a significant effect on all biological indicators. The inclusion of seasonal variability resulted in reference ranges 1.1 to 5.7 times wider than ranges accounting only for spatial variability. The reference system provides a basis for a first comparative assessment of soil quality for most agricultural soils of Wallonia, independent of sampling period.
S.E. Allen H.M. Grimshaw J. Parkinson a., Quarmb, C., Chemical Analysis 1989 of Ecological Materials.
Anderson, T.-H., Domsch, K.H., Application of eco-physiological quotients (qCO2 and qD) on microbial biomasses from soils of different cropping histories. Soil Biol. Biochem. 22 (1990), 251–255, 10.1016/0038-0717(90)90094-G.
Bah, B., Legrain, X., Engels, P., Colinet, G., Bock, L., 2007. Légende de la Carte Numérique des Sols de Wallonie (Belgique) - version 2., Faculté universitaire des Sciences agronomiques de Gembloux - Laboratoire de Géopédologie, en relation avec le PCNSW (convention pour le compte de la Région Wallonne - DGA). Unité de Science du Sol - GxABT - ULg.
Bartlett, M.D., Harris, J.A., James, I.T., Ritz, K., Inefficiency of mustard extraction technique for assessing size and structure of earthworm communities in UK pasture. Soil Biol. Biochem. 38 (2006), 2990–2992, 10.1016/j.soilbio.2006.04.036.
Barton, K., 2009. MuMIn: multi-model inference. R package version 1. 0. 0. http://r-forge. r-project. org/projects/mumin/.
Bloem, J., Schouten, A.J., Srensen, S.J., Rutgers, M., van der Werf, A., Breure, A.M., Monitoring and evaluating soil quality. Microbiol. Methods Assess. Soil Qual., 23–49, 2005, 10.1079/9780851990989.0023.
Bossio, D., Scow, K., Impact of carbon and flooding on the metabolic diversity of microbial communities in soils. Appl. Environ. Microbiol. 61:11 (1995), 4043–4050.
Bouché M., Aliaga, R., Contre une dégradation physique et chimique des sols et pour leur optimisation économique, l’échantillonnage des lombriciens: une urgente nécessité. La défense des végétaux 242 (1986), 30–36.
Buysse, P., Schnepf-Kiss, A.-C., Carnol, M., Malchair, S., Roisin, C., Aubinet, M., Fifty years of crop residue management have a limited impact on soil heterotrophic respiration. Agric. For. Meteorol. 180 (2013), 102–111, 10.1016/j.agrformet.2013.05.004.
Cathelineau, G., Grand, C., Pérès, G., Pauget, B., Rougé L., Bioindicateurs: des outils biologiques pour des sols durables, 2014.
Chaisuksant, Y., Yu, Q., Connell, D.W., The Internal Critical Level Concept of Nonspecific Toxicity. 1999, Springer, New York, NY 10.1007/978-1-4612-1528-8_1 1 41.
Chartin, C., Stevens, A., Goidts, E., Krüger, I., Carnol, M., van Wesemael, B., Mapping Soil Organic Carbon stocks and estimating uncertainties at the regional scale following a legacy sampling strategy. Geoderma Reg., 2017, 10.1016/j.geodrs.2016.12.006.
Cleveland, C.C., Liptzin, D., C:N: P stoichiometry in soil: is there a “Redfield ratio” for the microbial biomass?. Biogeochemistry 85 (2007), 235–252, 10.1007/s10533-007-9132-0.
Cluzeau, D., Guernion, M., Chaussod, R., Martin-Laurent, F., Villenave, C., Cortet, J., Ruiz-Camacho, N., Pernin, C., Mateille, T., Philippot, L., Bellido, A., Rougé L., Arrouays, D., Bispo, A., Pérès, G., Integration of biodiversity in soil quality monitoring: Baselines for microbial and soil fauna parameters for different land-use types. Eur. J. Soil Biol. 49 (2012), 63–72, 10.1016/j.ejsobi.2011.11.003.
Curry, J., Factors affecting the abundance of earthworms in soils. Earthworm Ecol., 9, 2004, 113, 10.1201/9781420039719.pt3.
D'Hose, T., Cougnon, M., De Vliegher, A., Vandecasteele, B., Viaene, N., Cornelis, W., Van Bockstaele, E., Reheul, D., The positive relationship between soil quality and crop production: a case study on the effect of farm compost application. Appl. Soil Ecol. 75 (2014), 189–198.
Dale, V.H., Beyeler, S.C., Challenges in the development and use of ecological indicators. Ecol. Indic. 1 (2001), 3–10, 10.1016/S1470-160X(01)00003-6.
Dequiedt, S., Saby, N.P.A., Lelievre, M., Jolivet, C., Thioulouse, J., Toutain, B., Arrouays, D., Bispo, A., Lemanceau, P., Ranjard, L., Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management. Glob. Ecol. Biogeogr. 20 (2011), 641–652, 10.1111/j.1466-8238.2010.00628.x.
Doran, J.W., Zeiss, M.R., Soil health and sustainability: managing the biotic component of soil quality. Appl. Soil Ecol. 15 (2000), 3–11, 10.1016/S0929-1393(00)00067-6.
Fan, F., Henriksen Christian, Bugge, Porter, J., Relationship between stoichiometry and ecosystem services: a case study of organic farming systems. Ecol. Indic. 85 (2018), 400–408, 10.1016/J.ECOLIND.2017.10.063.
Fisher, R.A., XV – The correlation between relatives on the supposition of mendelian inheritance. Trans. R. Soc. Edinburgh 52 (1919), 399–433, 10.1017/S0080456800012163.
Franzluebbers, A.J., Hons, F.M., Zuberer, D.A., Seasonal changes in soil microbial biomass and mineralizable c and n in wheat management systems. Soil Biol. Biochem. 26 (1994), 1469–1475, 10.1016/0038-0717(94)90086-8.
Friedrich, S., Konietschke, F., Pauly, M. 2018. Analysis of Multivariate Data and Repeated Measures Designs with the R Package MANOVA. RM. https://cran.r-project.org/web/packages/MANOVA.RM/MANOVA.RM.pdf.
Genot, V., Colinet, G., Bock, L., Vanvyve, D., Reusen, Y., Dardenne, P., Near infrared reflectance spectroscopy for estimating soil characteristics valuable in the diagnosis of soil fertility. J. Near Infrared Spectrosc. 19 (2011), 117–138, 10.1255/JNIRS.923.
Genot, V., Renneson, M., Colinet, G., Goffaux, M.-J., Cugnon, T., Toussaint, B., Buffet, D., Oger, R., 2012. Base de données sols de REQUASUD - 3ème synthèse.
Gil-Sotres, F., Trasar-Cepeda, C., Leirós, M.C., Seoane, S., Different approaches to evaluating soil quality using biochemical properties. Soil Biol. Biochem. 37 (2005), 877–887, 10.1016/j.soilbio.2004.10.003.
Goidts, E., Van Wesemael, B., Crucifix, M., Magnitude and sources of uncertainties in soil organic carbon (SOC) stock assessments at various scales. Europ. J. Soil Scien. 60:5 (2009), 723–739, 10.1111/j.1365-2389.2009.01157.x.
Goidts, E., van Wesemael, B., Regional assessment of soil organic carbon changes under agriculture in Southern Belgium (1955–2005). Geoderma 141 (2007), 341–354, 10.1016/j.geoderma.2007.06.013.
Griffiths, R.I., Thomson, B.C., James, P., Bell, T., Bailey, M., Whiteley, A.S., The bacterial biogeography of British soils. Environ. Microbiol. 13 (2011), 1642–1654, 10.1111/j.1462-2920.2011.02480.x.
Gunn, A., The use of mustard to estimate earthworm populations. Pedobiologia (Jena). 36 (1992), 65–67.
Hart, Stephen C., Stark, John M., Davidson, Eric A., Firestone, Mary K., Methods of Soil Analysis: Part 2—Microbiological and Biochemical Properties. 1994, SSSA Book Series Soil Science Society of America 10.2136/sssabookser5.2.c42.
Hermans, S.M., Buckley, H.L., Case, B.S., Curran-Cournane, F., Taylor, M., Lear, G., Bacteria as emerging indicators of soil condition. Appl. Environ. Microbiol. 83 (2017), e02826–16, 10.1128/AEM.02826-16.
Jenkinson, D.S., Powlson, D.S., The effects of biocidal treatments on metabolism in soil—V: a method for measuring soil biomass. Soil Biol. Biochem. 8 (1976), 209–213, 10.1016/0038-0717(76)90005-5.
Joergensen, R.G., The fumigation-extraction method to estimate soil microbial biomass: Calibration of the kEC value. Soil Biol. Biochem. 28 (1996), 25–31, 10.1016/0038-0717(95)00102-6.
Kersting, K., Normalized ecosystem strain: a system parameter for the analysis of toxic stress in (micro-) ecosystems. Ecol. Bull. 36 (1984), 150–153.
Koch, A., Mcbratney, A., Adams, M., Field, D., Hill, R., Crawford, J., Minasny, B., Lal, R., Abbott, L., O'Donnell, A., Angers, D., Baldock, J., Barbier, E., Binkley, D., Parton, W., Wall, D.H., Bird, M., Bouma, J., Chenu, C., Flora, C.B., Goulding, K., Grunwald, S., Hempel, J., Jastrow, J., Lehmann, J., Lorenz, K., Morgan, C.L., Rice, C.W., Whitehead, D., Young, I., Zimmermann, M., Soil security: solving the global soil crisis. Glob. Policy 4 (2013), 434–441, 10.1111/1758-5899.12096.
Krüger, I., Chartin, C., van Wesemael, B., Malchair, S., Carnol, M., Integrating biological indicators in a Soil Monitoring Network (SMN) to improve soil quality diagnosis–a case study in Southern Belgium (Wallonia). Biotechnologie, Agronomie, Société et Environnement, 21(3), 2017, 219.
Lawrence, A.P., Bowers, M.A., A test of the ‘hot’ mustard extraction method of sampling earthworms. Soil Biol. Biochem. 34 (2002), 549–552, 10.1016/S0038-0717(01)00211-5.
Mbuthia, J.M., Rewe, T.O., Kahi, A.K., Evaluation of pig production practices, constraints and opportunities for improvement in smallholder production systems in Kenya. Trop. Anim. Health Prod. 47 (2015), 369–376, 10.1007/s11250-014-0730-2.
Minasny, B., McBratney, A., A conditioned Latin hypercube method for sampling in the presence of ancillary information. Comput. Geosci., 2006.
Mol, G., Vriend, S.P., van Gaans, P.F.M., Future trends, detectable by soil monitoring networks?. J. Geochem. Explor. 62 (1998), 61–66, 10.1016/S0375-6742(97)00061-7.
Morvan, X., Saby, N.P.A., Arrouays, D., Le Bas, C., Jones, R.J.A., Verheijen, F.G.A., Bellamy, P.H., Stephens, M., Kibblewhite, M.G., Soil monitoring in Europe: a review of existing systems and requirements for harmonisation. Sci. Total Environ. 391 (2008), 1–12, 10.1016/j.scitotenv.2007.10.046.
Nakazawa, M., Nakazawa, M., 2015. Package “fmsb”.
Nunan, N., Morgan, M., Scott, J., Herlihy, M., Temporal changes in nitrogen mineralisation, microbial biomass, respiration and protease activity in a clay loam soil under ambient temperature. Biol. Environ., 2000.
Paz-Ferreiro, J., Fu, S., Biological indices for soil quality evaluation: perspectives and limitations. L. Degrad. Dev. 27 (2016), 14–25, 10.1002/ldr.2262.
Pereira e Silva, M.C., Semenov, A.V., Schmitt, H., van Elsas, J.D., Salles, J.F., Microbe-mediated processes as indicators to establish the normal operating range of soil functioning. Soil Biol. Biochem. 57 (2013), 995–1002, 10.1016/j.soilbio.2012.10.002.
Pérès, G., Vandenbulcke, F., Guernion, M., Hedde, M., Beguiristain, T., Douay, F., Houot, S., Piron, D., Richard, A., Bispo, A., Grand, C., Galsomies, L., Cluzeau, D., Earthworm indicators as tools for soil monitoring, characterization and risk assessment. 2011, An example from the national Bioindicator programme (France), Pedobiologia (Jena) https://doi.org/10.1016/j.pedobi.2011.09.015.
Pey, B., Laporte, M.-A., Nahmani, J., Auclerc, A., Capowiez, Y., Caro, G., Cluzeau, D., Cortet, J., Decaëns, T., Dubs, F., Joimel, S., Guernion, M., Briard, C., Grumiaux, F., Laporte, B., Pasquet, A., Pelosi, C., Pernin, C., Ponge, J.-F., Salmon, S., Santorufo, L., Hedde, M., A thesaurus for soil invertebrate trait-based approaches. PLoS One, 9, 2014, e108985, 10.1371/journal.pone.0108985.
Postma-Blaauw, M.B., de Goede, R.G.M., Bloem, J., Faber, J.H., Brussaard, L., Agricultural intensification and de-intensification differentially affect taxonomic diversity of predatory mites, earthworms, enchytraeids, nematodes and bacteria. Appl. Soil Ecol. 57 (2012), 39–49, 10.1016/j.apsoil.2012.02.011.
Postma-Blaauw, M.B., de Goede, R.G.M., Bloem, J., Faber, J.H., Brussaard, L., Soil biota community structure and abundance under agricultural intensification and extensification. Ecology 91 (2010), 460–473, 10.1890/09-0666.1.
Ritz, K., Black, H.I.J., Campbell, C.D., Harris, J.A., Wood, C., Selecting biological indicators for monitoring soils: a framework for balancing scientific and technical opinion to assist policy development. Ecol. Indic. 9 (2009), 1212–1221, 10.1016/j.ecolind.2009.02.009.
Robertson, G., Coleman, D., Bledsoe, C., Sollins, P., Standard soil Methods for Long-Term Ecological Research. 1999, Oxford University Press on Demand.
Rutgers, M., Mulder, C., Schouten, A.J., Bloem, J., Bogte, J.J., Breure, A.M., Brussaard, L., Goede, R.G.M., de Faber, J.H., Akkerhuis, G.A.J.M.J., op Keidel, H., Korthals, G.W., Smeding, F.W., Berg ter, C., van Eekeren, N.J.M., Soil ecosystem profiling in the Netherlands with ten references for biological soil quality, 2008.
Rutgers, M., Schouten, A.J., Bloem, J., van Eekeren, N., de Goede, R.G.M., Jagersop Akkerhuis, G.A.G.M., Vander Wal, A., Mulder, C., Brussaard, L., Breure, A.M., Biological measurements in a nationwide soil monitoring network. Eur. J. Soil Sci. 60 (2009), 820–832, 10.1111/j.1365-2389.2009.01163.x.
Schloter, M., Dilly, O., Munch, J.J., Indicators for evaluating soil quality. Agric. Ecosyst. Environ. 98 (2003), 255–262, 10.1016/S0167-8809(03)00085-9.
Schulte, R.P.O., Bampa, F., Bardy, M., Coyle, C., Creamer, R.E., Fealy, R., Gardi, C., Ghaley, B.B., Jordan, P., Laudon, H., O'Donoghue, C., óhUallacháin, D., ó’Sullivan, L., Rutgers, M., Six, J., Toth, G.L., Vrebos, D., Making the most of our land: managing soil functions from local to continental scale. Front. Environ. Sci., 3, 2015, 81, 10.3389/fenvs.2015.00081.
Smith, R.G., McSwiney, C.P., Grandy, A.S., Suwanwaree, P., Snider, R.M., Robertson, G.P., Diversity and abundance of earthworms across an agricultural land-use intensity gradient. Soil Tillage Res. 100 (2008), 83–88, 10.1016/J.STILL.2008.04.009.
Sparling, G.P.P., Soil microbial biomass, activity and nutrient cycling as indicators of soil health. Biol. Indic. Soil Heal., 1997, 97–119.
Steyer, R., Bedingte Varianz und Kovarianz. 2003, Springer, Berlin, Heidelberg, 183–196 https://doi.org/10.1007/978-3-642-55673-9_12.
Van Leeuwen, J.P., Lehtinen, T., Lair, G.J., Bloem, J., Hemerik, L., Ragnarsdóttir, K.V., Gísladóttir, G., Newton, J.S., De Ruiter, P.C., An ecosystem approach to assess soil quality in organically and conventionally managed farms in Iceland and Austria 1 (2015), 83–101, 10.5194/soil-1-83-2015.
van Leeuwen, J.P., Saby, N.P.A., Jones, A., Louwagie, G., Micheli, E., Rutgers, M., Schulte, R.P.O., Spiegel, H., Toth, G., Creamer, R.E., Gap assessment in current soil monitoring networks across Europe for measuring soil functions. Environ. Res. Lett., 12, 2017, 124007, 10.1088/1748-9326/aa9c5c.
Vance, E.D., Brookes, P.C., Jenkinson, D.S., Microbial biomass measurements in forest soils: the use of the chloroform fumigation-incubation method in strongly acid soils. Soil Biol. Biochem. 19 (1987), 697–702, 10.1016/0038-0717(87)90051-4.
Velasquez, E., Lavelle, P., Andrade, M., GISQ, a multifunctional indicator of soil quality. Soil Biol. Biochem. 39 (2007), 3066–3080, 10.1016/J.SOILBIO.2007.06.013.
Vincent, Q., Auclerc, A., Beguiristain, T., Leyval, C., Assessment of derelict soil quality: abiotic, biotic and functional approaches. Sci. Total Environ. 613–614 (2018), 990–1002, 10.1016/J.SCITOTENV.2017.09.118.
Waldrop, M.P., Firestone, M.K., Seasonal dynamics of microbial community composition and function in oak canopy and open grassland soils. Microb. Ecol. 52 (2006), 470–479, 10.1007/s00248-006-9100-6.
Wheeler, B., Orphaned, M., Package “lmPerm”. 2014, R Packag. Version.
Wienhold, B.J., Karlen, D.L., Andrews, S.S., Stott, D.E., Protocol for indicator scoring in the soil management assessment framework (SMAF). Renew. Agric. Food Syst., 24, 2009, 260, 10.1017/S1742170509990093.
Wood, M., Litterick, A.M., Soil health – what should the doctor order?. Soil Use Manag. 33 (2017), 339–345, 10.1111/sum.12344.
Zveryaev, I.I., Seasonality in precipitation variability over Europe. J. Geophys. Res., 109, 2004, D05103, 10.1029/2003JD003668.