Range shifts or extinction? Ancient DNA and distribution modelling reveal past and future responses to climate warming in cold-adapted birds

Lagerholm, V. K.; Sandoval-Castellanos, E.; Vaniscotte, A.; Potapova, O. R.; Tomek, T.; Bochenski, Z. M.; Shepherd, P.; Barton, N.; Van Dyck, M.-C.; Miller, Rebecca; Höglund, J.; Yoccoz, N. G.; Dalén, L.; Stewart, J. R.

doi:10.1111/gcb.13522

Article (Scientific journals)

Range shifts or extinction? Ancient DNA and distribution modelling reveal past and future responses to climate warming in cold-adapted birds

Lagerholm, V. K.; Sandoval-Castellanos, E.; Vaniscotte, A. et al.

2017 • In Global Change Biology, 23 (4), p. 1425-1435

Peer Reviewed verified by ORBi

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https://hdl.handle.net/2268/224715

DOI
10.1111/gcb.13522

PubMed
27762483

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Keywords :

Lagopus; Pleistocene; DNA; Last Glacial Maximum; Aves; Lagopus lagopus; Lagopus mutus; Mammalia; Salix; Europe; Adaptation, Physiological; Animals; Birds; Climate; Climate Change; Cold Temperature; DNA, Ancient; Ecosystem

Abstract :

[en] Global warming is predicted to cause substantial habitat rearrangements, with the most severe effects expected to occur in high-latitude biomes. However, one major uncertainty is whether species will be able to shift their ranges to keep pace with climate-driven environmental changes. Many recent studies on mammals have shown that past range contractions have been associated with local extinctions rather than survival by habitat tracking. Here, we have used an interdisciplinary approach that combines ancient DNA techniques, coalescent simulations and species distribution modelling, to investigate how two common cold-adapted bird species, willow and rock ptarmigan (Lagopus lagopus and Lagopus muta), respond to long-term climate warming. Contrary to previous findings in mammals, we demonstrate a genetic continuity in Europe over the last 20 millennia. Results from back-casted species distribution models suggest that this continuity may have been facilitated by uninterrupted habitat availability and potentially also the greater dispersal ability of birds. However, our predictions show that in the near future, some isolated regions will have little suitable habitat left, implying a future decrease in local populations at a scale unprecedented since the last glacial maximum. © 2016 John Wiley & Sons Ltd

Disciplines :

Environmental sciences & ecology
History

Author, co-author :

Lagerholm, V. K.; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden, Department of Zoology, Stockholm University, Stockholm, Sweden

Sandoval-Castellanos, E.; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden, Department of Zoology, Stockholm University, Stockholm, Sweden, Centro de Ciencias de la Complejidad, Universidad Nacional Autónoma de México, Ciudad de México, Mexico

Vaniscotte, A.; Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway

Potapova, O. R.; Mammoth Site of Hot Springs, SD, Inc., Hot Springs, NC, United States

Tomek, T.; Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Kraków, Poland

Bochenski, Z. M.; Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Kraków, Poland

Shepherd, P.; British Geological Survey, Nottingham, United Kingdom

Barton, N.; Institute of Archaeology, University of Oxford, Oxford, United Kingdom

Van Dyck, M.-C.; Institute for the Analysis of Change in Contemporary and Historical Societies, Université Catholique de Louvain, Louvain-la-Neuve, Belgium

Miller, Rebecca ; Université de Liège - ULiège

More authors (4 more)

Language :

English

Title :

Range shifts or extinction? Ancient DNA and distribution modelling reveal past and future responses to climate warming in cold-adapted birds

Publication date :

2017

Journal title :

Global Change Biology

ISSN :

1354-1013

eISSN :

1365-2486

Publisher :

Wiley, Oxford, United Kingdom

Volume :

Issue :

Pages :

1425-1435

Peer reviewed :

Peer Reviewed verified by ORBi

Name of the research project :

FP6, Sixth Framework Programme

Funders :

Sapienza - Sapienza Università di Roma [IT]
ESC - European Society of Cardiology [FR]
Sverige Vetenskapsrådet [SE]
NHM - National Museum of Natural History [US-WA] [US-WA]

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Bibliography

Baba Y, Fujimaki Y, Yoshii R, Koike H (2001) Genetic variability in the mitochondrial control region of the Japanese Rock Ptarmigan Lagopus mutus japonicus. Japanese Journal of Ornithology, 50, 53–64.
Bennett KD, Tzedakis PC, Willis KJ (1991) Quaternary refugia of North European trees. Journal of Biogeography, 18, 103–115.
BirdLife International (2012a) Lagopus lagopus. In: IUCN 2012. IUCN Red List of Threatened Species. Version 2012.2.
BirdLife International (2012b) Lagopus muta. In: IUCN 2012. IUCN Red List of Threatened Species. Version 2012.2.
Bochenski Z (1985) Osteological differentiation in willow grouse. Fortschritte der Zoologie, 30, 69–72.
Dalén L, Nyström V, Valdiosera C et al. (2007) Ancient DNA reveals lack of postglacial habitat tracking in the arctic fox. Proceedings of the National Academy of Sciences, 104, 6726–6729.
Darnault R, Rolland Y, Braucher R, Bourlès D, Revel M, Sanchez G, Bouissou S (2012) Timing of the last deglaciation revealed by receding glaciers at the Alpine-scale: impact on mountain geomorphology. Quaternary Science Reviews, 31, 127–142.
Drovetski SV (2003) Plio-Pleistocene climatic oscilations, Holarctic biogeography and speciation in an avian subfamily. Journal of Biogeography, 30, 1173–1181.
Drummond AJ, Rambaut A, Shapiro B, Pybus OG (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution, 22, 1185–1192.
Drummond AJ, Suchard MA, Xie D, Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29, 1969–1973.
Engler R, Randin CF, Vittoz P et al. (2009) Predicting future distributions of mountain plants under climate change: does dispersal capacity matter? Ecography, 32, 34–45.
Espíndola A, Pellissier L, Maiorano L, Hordijk W, Guisan A, Alvarez N (2012) Predicting present and future intra-specific genetic structure through niche hindcasting across 24 millennia. Ecology Letters, 15, 649–657.
Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564–567.
Fagundes NJR, Ray N, Beaumont M, Neuenschwander S, Salzano FM, Bonatto SL, Excoffier L (2007) Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences, 104, 17614–17619.
Gienapp P, Teplitsky C, Alho JS, Mills JA, MerilÄ J (2008) Climate change and evolution: disentangling environmental and genetic responses. Molecular Ecology, 17, 167–178.
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.
Hampe A, Jump AS (2011) Climate relicts: past, present, future. Annual Review of Ecology, Evolution, and Systematics, 42, 313–333.
Hansen BB, Grøtan V, Aanes R et al. (2013) Climate events synchronize the dynamics of a resident vertebrate community in the high Arctic. Science, 339, 313–315.
Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society, 58, 247–276.
Hewitt GM (1999) Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society, 68, 87–112.
Ho SYW, Lanfear R, Bromham L, Phillips MJ, Soubrier J, Rodrigo AG, Cooper (2011) Time-dependent rates of molecular evolution. Molecular Ecology, 20, 3087–3101.
Hodgson JA, Thomas CD, Dytham C, Travis JMJ, Cornell SJ (2012) The speed of range shifts in fragmented landscapes. PLoS ONE, 7, e47141.
Höglund J, Wang B, Axelsson T, Quintela M (2013) Phylogeography of willow grouse (Lagopus lagopus) in the Arctic: taxonomic discordance as inferred from molecular data. Biological Journal of the Linnean Society, 110, 77–90.
Huntley B, Allen JRM, Barnard P, Collingham YC, Holliday PR (2013) Species distribution models indicate contrasting late-Quaternary histories for Southern and Northern Hemisphere bird species. Global Ecology and Biogeography, 22, 277–288.
IPCC (2001) Climate Change 2001: The Scientific Basis. In: Contribution of Working Group I to the Third Assessment Report of the Intergovernmental Panel on Climate Change (eds Houghton JT, Ding Y, Griggs DJ et al.), Cambridge University Press, Cambridge, UK.
Johnson TC, Scholz CA, Talbot MR et al. (1996) Late Pleistocene desiccation of Lake Victoria and rapid volution of Cichlid fishes. Science, 273, 1091–1093.
Kerr JT, Pindar A, Galpern P et al. (2015) Climate change impacts on bumblebees converge across continents. Science, 349, 177–180.
Kozma R, Melsted P, Magnússon KP, Höglund J (2016) Looking into the past – the reaction of three grouse species to climate change over the last million years using whole genome sequences. Molecular Ecology, 25, 570–580.
Lagerholm VK, Sandoval-Castellanos E, Ehrich D et al. (2014) On the origin of the Norwegian lemming. Molecular Ecology, 23, 2060–2071.
Maiorano L, Cheddadi R, Zimmermann NE et al. (2013) Building the niche through time: using 13 000 years of data to predict the effects of climate change on three tree species in Europe. Global Ecology and Biogeography, 22, 302–317.
McGarigal K, Cushman SA, Neel MC, Ene E (2002) FRAGSTATS: Spatial Pattern Analysis Program for Categorical Maps. University of Massachusetts, Amherst.
Mitchell TD, Carter TR, Jones PD, Hulme M, New M (2004) A comprehensive set of high-resolution grids of monthly climate for Europe and the globe: the observed record (1901–2000) and 16 scenarios (2001–2100). Tyndall Centre Working Paper No. 55, July 2004; Available at: http://www.tyndall.ac.uk/sites/default/files/wp55.pdf (accessed 21 July 2014).
Nylander JAA (2004) MrModeltest v2, p. Available at: http://www.abc.se/~nylander/mrmodeltest2/mrmodeltest2.html (accessed 29 October 2010)
Nyström J, Ekenstedt J, Engström J, Angerbjörn A (2005) Gyr Falcons, ptarmigan and microtine rodents in northern Sweden. Ibis, 147, 587–597.
Palkopoulou E, Dalén L, Lister AM et al. (2013) Holarctic genetic structure and range dynamics in the woolly mammoth. Proceedings of the Biological Sciences, 280, 7.
Palkopoulou E, Baca M, Abramson NI et al. (2016) Synchronous genetic turnovers across Western Eurasia in Late Pleistocene collared lemmings. Global Change Biology, 22, 1710–1721.
Pedersen HC, Steen H, Kastdalen L, Brøseth H, Ims RA, Svendsen W, Yoccoz NG (2004) Weak compensation of harvest despite strong density–dependent growth in willow ptarmigan. Proceedings of the Royal Society of London. Series B: Biological Sciences, 271, 381–385.
Pithan F, Mauritsen T (2014) Arctic amplification dominated by temperature feedbacks in contemporary climate models. Nature Geosciences, 7, 181–184.
Potapov R, Potapov E (2011) Willow and Rock Ptarmigan monitoring in Russia: an historic overview. In: Gyrfalcons and Ptarmigan in a Changing World (eds Watson RT, Cade TJ, Fuller M, Hunt G, Potapov E), The Peregrine Fund, Boise, Idaho, USA.
Potapova O (1986) Grouse of the genus Lagopus in the Pleistocene of the Northern Urals. Proceedings of the Zoological Institute, USSR Academy of Sciences, 147, 46–58.
Prost S, Anderson CNK (2011) TempNet: a method to display statistical parsimony networks for heterochronous DNA sequence data. Methods in Ecology and Evolution, 2, 663–667.
R Core Team (2014) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available at: http://www.R-project.org/ (accessed 21 July 2014).
Rambaut A, Drummond AJ (2007) Tracer v1.4: MCMC trace analyses tool. Available at: http://tree.bio.ed.ac.uk/software/tracer/ (accessed 28 ?November ?2013).
Sala OE, Stuart Chapin F, Armesto JJ et al. (2000) Global biodiversity scenarios for the year 2100. Science, 287, 1770–1774.
Sandoval-Castellanos E, Palkopoulou E, Dalén L (2014) Back to BaySICS: a user-friendly program for Bayesian statistical inference from coalescent simulations. PLoS ONE, 9, e98011.
Segelbacher G (2002) Noninvasive genetic analysis in birds: testing reliability of feather samples. Molecular Ecology Notes, 2, 367–369.
Serreze MC, Barry RG (2011) Processes and impacts of Arctic amplification: a research synthesis. Global and Planetary Change, 77, 85–96.
Smith SE, Gregory RD, Anderson BJ, Thomas CD (2013) The past, present and potential future distributions of cold-adapted bird species. Diversity and Distributions, 19, 352–362.
Stewart JR (1999) Intraspecific variation in modern and quaternary European Lagopus. In: Avian Paleontology at the Close of the 20th Century. Proceedings of the 4th International Meeting of the Society of Avian Paleontology and Evolution (ed. Olson SL), pp. 159–168. Smithsonian Contributions to Paleobiology 89. Smithsonian Institution Press, Washington, D.C.
Stewart JR (2007) An Evolutionary Study of Some Archaeologically Significant Avian Taxa in the Quaternary of the Western Palaearctic. Hadrian Books Ltd, Oxford.
Stewart JR, Lister AM, Barnes I, Dalén L (2010) Refugia revisited: individualistic responses of species in space and time. Proceedings of the Royal Society B: Biological Sciences, 277, 661–671.
Taberlet P, Fumagalli L, Wust-Saucy A-G, Cosson J-F (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7, 453–464.
Thomas CD, Cameron A, Green RE et al. (2004) Extinction risk from climate change. Nature, 427, 145–148.
Thuiller W, Lafourcade B, Engler R, Araújo MB (2009) BIOMOD – a platform for ensemble forecasting of species distributions. Ecography, 32, 369–373.
Tyrberg T (1998) Pleistocene Birds of the Palearctic: A Catalogue. Nuttall Ornithological Club, Cambridge.
Tyrberg T (2008) Pleistocene birds of the Palearctic. Available at: http://web.telia.com/~u11502098/pleistocene.pdf (accessed 13 April 2011).
Urban MC (2015) Accelerating extinction risk from climate change. Science, 348, 571–573.
VanDerWal J, Falconi L, Januchowski S, Shoo L, Storlie C (2012) Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises. Available at: http://www.rforge.net/SDMTools/ (accessed 21 July 2014).
Waters JM, Fraser CI, Hewitt GM (2013) Founder takes all: density-dependent processes structure biodiversity. Trends in Ecology and Evolution, 28, 78–85.