Genetic assessment of african swine fever isolates involved in outbreaks in the Democratic Republic Of Congo between 2005 and 2012 reveals co-circulation of p72 genotypes I, IX and XIV, including 19 variants
Mulumba-Mfumu, L. K.; Achenbach, J. E.; Mauldin, M. R.et al.
Mulumba-Mfumu, L. K.; Central Veterinary Laboratory, Avenue Wangata, P.O. Box 8842, Kinshasa I, Congo, Research Unit of Epidemiology and Risk Analysis Applied to Veterinary (UREAR-Ulg), Fundamental and Applied Research for Animals & Health, Faculty of Veterinary Medicine, University of Liege, Liege, Belgium
Achenbach, J. E.; Animal Production and Health Laboratory, International Atomic Energy Agency, Wagramer Strasse 5, P.O. Box 100, Vienna, Austria
Mauldin, M. R.; Centers for Disease Control and Prevention, Atlanta, GA, United States, Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN, United States
Dixon, L. K.; Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU24 ONF, United Kingdom
Tshilenge, C. G.; Central Veterinary Laboratory, Avenue Wangata, P.O. Box 8842, Kinshasa I, Congo
Thiry, Etienne ; Université de Liège - ULiège > Département des maladies infectieuses et parasitaires (DMI) > Virologie vétérinaire et maladies virales animales
Moreno, N.; Centro de Investigación en Sanidad Animal (CISA), INIA, Valdeolmos, Madrid, Spain
Blanco, E.; Centro de Investigación en Sanidad Animal (CISA), INIA, Valdeolmos, Madrid, Spain
Saegerman, Claude ; Université de Liège - ULiège > Département des maladies infectieuses et parasitaires (DMI) > Epidémiologie et analyse des risques appl. aux sc. vétér.
Lamien, C. E.; Animal Production and Health Laboratory, International Atomic Energy Agency, Wagramer Strasse 5, P.O. Box 100, Vienna, Austria
Diallo, A.; Animal Production and Health Laboratory, International Atomic Energy Agency, Wagramer Strasse 5, P.O. Box 100, Vienna, Austria
Language :
English
Title :
Genetic assessment of african swine fever isolates involved in outbreaks in the Democratic Republic Of Congo between 2005 and 2012 reveals co-circulation of p72 genotypes I, IX and XIV, including 19 variants
Publication date :
2017
Journal title :
Viruses
eISSN :
1999-4915
Publisher :
MDPI AG, Basel, Switzerland
Volume :
9
Issue :
2
Peer reviewed :
Peer Reviewed verified by ORBi
Name of the research project :
WT075813/C/04/Z
Funders :
Wellcome Trust IAEA - International Atomic Energy Agency
Sánchez-Vizcaíno, J.M.; Mur, L.; Sánchez-Matamoros, A.; Martínez-López, B. African swine fever: New challenges and measures to prevent its spread. In Proceedings of the 82nd General Session World Assembly of Delegates of the World Organisation for Animal Health (OIE), Paris, France, 25-30 May 2014.
Montgomery, R.E. On a form of swine fever occurring in British East Africa (Kenya Colony). J. Comp. Pathol. Ther. 1921, 34, 159-191. [CrossRef]
Bastos, A.D.; Penrith, M.L.; Cruciere, C.; Edrich, J.L.; Hutchings, G.; Roger, F.; Couacy-Hymann, E.; Thomson, R. Genotyping field strains of African swine fever virus by partial p72 gene characterisation. Arch. Virol. 2003, 148, 693-706. [CrossRef] [PubMed]
Phologane, S.B.; Bastos, A.D.; Penrith, M.L. Intra- and inter-genotypic size variation in the central variable region of the 9RL open reading frame of diverse African swine fever viruses. Virus Genes 2005, 31, 357-360. [CrossRef] [PubMed]
Gallardo, C.; Mwaengo, D.M.; Macharia, J.M.; Arias, M.; Taracha, E.A.; Soler, A.; Okoth, E.; Martin, E.; Kasiti, J.; Bishop, R.P. Enhanced discrimination of African swine fever virus isolates through nucleotide sequencing of the p54, p72, and pB602L (CVR) genes. Virus Genes 2009, 38, 85-95. [CrossRef] [PubMed]
Achenbach, J.E.; Gallardo, C.; Nieto-Pelegrín, E.; Rivera-Arroyo, B.; Degefa-Negi, T.; Arias, M.; Jenberie, S.; Mulisa, D.D.; Gizaw, D.; Gelaye, E. ; et al. Identification of a New Genotype of African Swine Fever Virus in Domestic Pigs from Ethiopia. Transbound. Emerg. Dis. 2016. [CrossRef] [PubMed]
Gallardo, C.; Anchuelo, R.; Pelayo, V.; Poudevigne, F.; Leon, T.; Nzoussi, J.; Bishop, R.; Pérez, C.; Soler, A.; Nieto, R. ; et al. African swine fever virus p72 genotype IX in domestic pigs, Congo, 2009. Emerg. Infect. Dis. 2011, 7, 1556-1558. [CrossRef] [PubMed]
Atuhaire, D.K.; Afayoa, M.; Ochwo, S.; Mwesigwa, S.; Okuni, J.B.; Olaho-Mukani, W.; Ojok, L. Molecular characterization and phylogenetic study of African swine fever virus isolates from recent outbreaks in Uganda (2010-2013). Virol. J. 2013. [CrossRef] [PubMed]
Gallardo, C.; Ademun, A.R.; Nieto, R.; Nantima, N.; Arias, M.; Martín, E.; Pelayo, V.; Bishop, R.P. Genotyping of African swine fever virus (ASFV) isolates associated with disease outbreaks in Uganda in 2007. Afr. J. Biotechnol. 2011, 10, 3488-3497.
Misinzo, G.; Magambo, J.; Masambu, J.; Yongolo, M.G.; Van, D.J.; Nauwynck, H.J. Genetic characterization of African swine fever viruses from a 2008 outbreak in Tanzania. Transbound. Emerg. Dis. 2011, 58, 86-92. [CrossRef] [PubMed]
Gogin, A.; Gerasimov, V.; Malogolovkin, A.; Kolbasov, D. African swine fever in the North Caucasus region and the Russian Federation in years 2007-2012. Virus Res. 2013, 173, 198-203. [CrossRef] [PubMed]
Bosch, J.; Rodríguez, A.; Iglesias, I.; Muñoz, M.J.; Jurado, C.; Sánchez-Vizcaíno, J.M.; de la Torre, A. Update on the Risk of Introduction of African Swine Fever by Wild Boar into Disease-Free European Union Countries. Transbound. Emerg. Dis. 2016. [CrossRef] [PubMed]
Gallardo, C.; Fernández-Pinero, J.; Pelayo, V.; Gazaev, I.; Markowska-Daniel, I.; Pridotkas, G.; Nieto, R.; Fernández-Pacheco, P.; Bokhan, S.; Nevolko, O. ; et al. Genetic variation among African swine fever genotype II viruses, eastern and central Europe. Emerg. Infect. Dis. 2014, 20, 1544-1547. [CrossRef] [PubMed]
El-Sawalhy, A.; Soumaré, B.; Nouala, S.; Mukanda, B.; Wamwayi, H.; Ahmed, I.G. African Swine fever. In Pan African Animal Health Yearbook; Interafrican Bureau for Animal Resources, African Union: Nairobi, Kenya, 2011; pp. 16-17.
King, D.P.; Reid, S.M.; Hutchings, G.H.; Grierson, S.S.; Wilkinson, P.J.; Dixon, L.K.; Bastos, A.D.; Drew, T.W. Development of a TaqMan PCR assay with internal amplification control for the detection of African swine fever virus. J. Virol. Methods 2003, 107, 53-61. [CrossRef]
Nix, R.J.; Gallardo, C.; Hutchings, G.; Blanco, E.; Dixon, L.K. Molecular epidemiology of African swine fever virus studied by analysis of four variable genome regions. Arch. Virol. 2006, 151, 2475-2494. [CrossRef] [PubMed]
Boshoff, C.I.; Bastos, A.D.; Gerber, L.J.; Vosloo, W. Genetic characterisation of African swine fever viruses from outbreaks in southern Africa (1973-1999). Vet. Microbiol. 2007, 121, 45-55. [CrossRef] [PubMed]
Lubisi, B.A.; Bastos, A.D.; Dwarka, R.M.; Vosloo, W. Intra-genotypic resolution of African swine fever viruses from an East African domestic pig cycle: A combined p72-CVR approach. Virus Genes 2007, 35, 729-735. [CrossRef] [PubMed]
Misinzo, G.; Kwavi, D.E.; Sikombe, C.D.; Makange, M.; Peter, E.; Muhairwa, A.P.; Madege, M.J. Molecular characterization of African swine fever virus from domestic pigs in northern Tanzania during an outbreak in 2013. Trop. Anim. Health Prod. 2014, 46, 1199-1207. [CrossRef] [PubMed]
Ekue, N.F.; Wilkinson, P.J. Comparison of genomes of African swine fever virus isolates from Cameroon, other African countries and Europe. Rev. Elev. Méd. Vét. Pays Trop. 2000, 53, 229-238.
Mulumba-Mfumu, L.K.; Goatley, L.C.; Saegerman, C.; Takamatsu, H.H.; Dixon, L.K. Immunization of African Indigenous Pigs with Attenuated Genotype I African Swine Fever Virus OURT88/3 Induces Protection Against Challenge with Virulent Strains of Genotype I. Transbound. Emerg. Dis. 2016, 63, e323-e327. [CrossRef] [PubMed]
Praet, N.; Kanobana, K.; Kabwe, C.; Maketa, V.; Lukanu, P.; Lutumba, P.; Polman, K.; Matondo, P.; Speybroeck, N.; Dorny, P. Taenia solium cysticercosis in the Democratic Republic of Congo: How does pork trade affect the transmission of the parasite. PLoS Negl. Trop. Dis. 2010, 4, e817. [CrossRef] [PubMed]
Atuhaire, D.K.; Ochwo, S.; Afayoa, M.; Mwesigwa, S.; Mwiine, F.N.; Okuni, J.B.; Olaho-Mukani, W.; Ojak, L. Molecular characterization of African swine fever virus in apparently healthy domestic pigs in Uganda. Afr. J. Biotechnol. 2014, 13, 2491-2499.
Giammarioli, M.; Gallardo, C.; Oggiano, A.; Iscaro, C.; Nieto, R.; Pellegrini, C.; Dei, G.S.; Arias, M.; De Mia, G.M. Genetic characterisation of African swine fever viruses from recent and historical outbreaks in Sardinia (1978-2009). Virus Genes 2011, 42, 377-387. [CrossRef] [PubMed]
Goller, K.V.; Malogolovkin, A.S.; Katorkin, S.; Kolbasov, D.; Titov, I.; Hoper, D.; Beer, M.; Keil, G.M.; Portugal, R.; Blome, S. Tandem repeat insertion in African swine fever virus, Russia, 2012. Emerg. Infect. Dis. 2015, 21, 731-732. [CrossRef] [PubMed]
Irusta, P.M.; Borca, M.V.; Kutish, G.F.; Lu, Z.; Caler, E.; Carrillo, C.; Rock, D.L. Amino acid tandem repeats within a late viral gene define the central variable region of African swine fever virus. Virology 1996, 220, 20-27. [CrossRef] [PubMed]
Bastos, A.D.; Penrith, M.L.; Macome, F.; Pinto, F.; Thomson, G.R. Co-circulation of two genetically distinct viruses in an outbreak of African swine fever in Mozambique: No evidence for individual co-infection. Vet. Microbiol. 2004, 103, 169-182. [CrossRef] [PubMed]
Gallardo, C.; Soler, A.; Nieto, R.; Cano, C.; Pelayo, V.; Sanchez, M.A.; Pridotkas, G.; Fernandez-Pinero, J.; Briones, V.; Arias, M. Experimental Infection of Domestic Pigs with African Swine Fever Virus Lithuania 2014 Genotype II Field Isolate. Transbound. Emerg. Dis. 2017, 64, 300-304. [CrossRef] [PubMed]
Central Veterinary Laboratory (CVL). Rapport Annuel D’Activites (Kinshasa/RDC); CVL: Kinshasa, Democratic Republic of Congo, 2010; pp. 1-52.
Owolodun, O.A.; Bastos, A.D.; Antiabong, J.F.; Ogedengbe, M.E.; Ekong, P.S.; Yakubu, B. Molecular characterisation of African swine fever viruses from Nigeria (2003-2006) recovers multiple virus variants and reaffirms CVR epidemiological utility. Virus Genes 2010, 41, 361-368. [CrossRef] [PubMed]
Smith, G.P. Evolution of repeated DNA sequences by unequal crossover. Science 1976, 191, 528-535. [CrossRef] [PubMed]
Blasco, R.; de la Vega, I.; Almazan, F.; Aguero, M.; Vinuela, E. Genetic variation of African swine fever virus: Variable regions near the ends of the viral DNA. Virology 1989, 173, 251-257. [CrossRef]
Garcia-Barreno, B.; Sanz, A.; Nogal, M.L.; Vinuela, E.; Enjuanes, L. Monoclonal antibodies of African swine fever virus: Antigenic differences among field virus isolates and viruses passaged in cell culture. J. Virol. 1986, 58, 385-392. [PubMed]