Complete genome sequence of Bacillus amyloliquefaciens subsp. plantarum S499, a rhizobacterium that triggers plant defences and inhibits fungal phytopathogens
Molinatto, G.; Department of Sustainable Agro-Ecosystems and Bioresources, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach, Michele all'AdigeTN, Italy
Puopolo, G.; Department of Sustainable Agro-Ecosystems and Bioresources, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach, Michele all'AdigeTN, Italy
Sonego, P.; Department of Computational Biology, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach, Michele all'AdigeTN, Italy
Moretto, M.; Department of Computational Biology, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach, Michele all'AdigeTN, Italy
Engelen, K.; Department of Computational Biology, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach, Michele all'AdigeTN, Italy
Viti, C.; Department of Agrifood Production and Environmental Sciences, University of Firenze, Piazzale delle Cascine, Florence, Italy
Ongena, Marc ; Université de Liège > Agronomie, Bio-ingénierie et Chimie (AgroBioChem) > Bio-industries
Pertot, I.; Department of Sustainable Agro-Ecosystems and Bioresources, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach, Michele all'AdigeTN, Italy
Language :
English
Title :
Complete genome sequence of Bacillus amyloliquefaciens subsp. plantarum S499, a rhizobacterium that triggers plant defences and inhibits fungal phytopathogens
Arguelles-Arias, A., Ongena, M., Devreese, B., Terrak, M., Joris, B., Fickers, P., Characterization of amylolysin, a novel lantibiotic from Bacillus amyloliquefaciens GA1. PLoS One, 8, 2013, e83037, 10.1371/journal.pone.0083037.
Aziz, R.K., Bartels, D., Best, A.A., DeJongh, M., Disz, T., Edwards, R.A., Formsma, K., Gerdes, S., Glass, E.M., Kubal, M., Meyer, F., The RAST Server: rapid annotations using subsystems technology. BMC Genomics, 9, 2008, 75, 10.1186/1471-2164-9-75.
Benson, G., Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res., 27, 1999, 573, 10.1093/nar/27.2.573.
Cawoy, H., Mariutto, M., Henry, G., Fisher, C., Vasilyeva, N., Thonart, P., Dommes, J., Ongena, M., Plant defense stimulation by natural isolates of Bacillus depends on efficient surfactin production. Mol. Plant Microbe Interact. 27 (2014), 87–100, 10.1094/MPMI-09-13-0262-R.
Cawoy, H., Debois, D., Franzil, L., De Pauw, E., Thonart, P., Ongena, M., Lipopeptides as main ingredients for inhibition of fungal phytopathogens by Bacillus subtilis amyloliquefaciens. Microb. Biotechnol. 8 (2015), 281–295, 10.1111/1751-7915.12238.
Chin, C.S., Alexander, D.H., Marks, P., Klammer, A.A., Drake, J., Heiner, C., Clum, A., Copeland, A., Huddleston, J., Eichler, E.E., Turner, S.W., Korlach, J., Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10 (2013), 563–569, 10.1038/nmeth.2474.
Darling, A.E., Mau, B., Perna, N.T., ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One, 5, 2010, e11147, 10.1371/journal.pone.0011147.
Debois, D., Jourdan, E., Smargiasso, N., Thonart, P., De Pauw, E., Ongena, M., Spatiotemporal monitoring of the antibiome secreted by Bacillus biofilms on plant roots using MALDI mass spectrometry imaging. Anal. Chem. 86 (2014), 4431–4438, 10.1021/ac500290s.
Debois, D., Fernandez, O., Franzil, L., Jourdan, E., Brogniez, A., Willems, L., Clément, C., Dorey, S., De Pauw, E., Ongena, M., Plant polysaccharides initiate underground crosstalk with bacilli by inducing synthesis of the immunogenic lipopeptide surfactin. Environ. Microbiol. Rep. 7 (2015), 570–582, 10.1111/1758-2229.12286.
Delcambe, L., L'Iturine, I., Préparation: purification et poids moléculaire. Bull. Soc. Chim. Belg. 74 (1965), 315–328.
Henry, G., Deleu, M., Jourdan, E., Thonart, P., Ongena, M., The bacterial lipopeptide surfactin targets the lipid fraction of the plant plasma membrane to trigger immune‐related defence responses. Cell. Microbiol. 1311 (2011), 1824–1837, 10.1111/j.1462-5822.2011.01664.x.
Idriss, E.E., Makarewicz, O., Farouk, A., Rosner, K., Greiner, R., Bochow, H., Richter, T., Borriss, R., Extracellular phytase activity of Bacillus amyloliquefaciens FZB45 contributes to its plant-growth-promoting effect. Microbiology 148 (2002), 2097–2109, 10.1099/00221287-148-7-2097.
Langille, M.G., Brinkman, F.S., IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 5 (2009), 664–665, 10.1093/bioinformatics/btp030.
Llewellyn, N.M., Li, Y., Spencer, J.B., Biosynthesis of butirosin: transfer and deprotection of the unique amino acid side chain. Chem. Biol. 14 (2007), 379–386, 10.1016/j.chembiol.2007.02.005.
Nihorimbere, V., Ongena, M., Cawoy, H., Brostaux, Y., Kakana, P., Jourdan, E., Thonart, P., Beneficial effects of Bacillus subtilis on field-grown tomato in Burundi: reduction of local Fusarium disease and growth promotion. Afr. J. Microbiol. Res. 4 (2010), 1135–1142.
Nihorimbere, V., Cawoy, H., Seyer, A., Brunelle, A., Thonart, P., Ongena, M., Impact of rhizosphere factors on cyclic lipopeptide signature from the plant beneficial strain Bacillus amyloliquefaciens S499. FEMS Microbial. Ecol. 79 (2012), 176–191, 10.1111/j.1574-6941.2011.01208.x.
Ongena, M., Duby, F., Jourdan, E., Beaudry, T., Jadin, V., Dommes, J., Thonart, P., Bacillus subtilis M4 decreases plant susceptibility towards fungal pathogens by increasing host resistance associated with differential gene expression. Appl. Microbiol. Biotechnol. 67 (2005), 692–698, 10.1007/s00253-004-1741-0.
Ongena, M., Jacques, P., Touré, Y., Destain, J., Jabrane, A., Thonart, P., Involvement of fengycin-type lipopeptides in the multifaceted biocontrol potential of Bacillus subtilis. Appl. Microbiol. Biotechnol. 69 (2005), 29–38, 10.1007/s00253-005-1940-3.
Ongena, M., Jourdan, E., Adam, A., Paquot, M., Brans, A., Joris, B., Arpigny, J.L., Thonart, P., Surfactin and fengycin lipopeptides of Bacillus subtilis as elicitors of induced systemic resistance in plants. Environ. Microbiol. 9 (2007), 1084–1090, 10.1111/j.1462-2920.2006.01202.x.
Pertot, I., Puopolo, G., Hosni, T., Pedrotti, L., Jourdan, E., Ongena, M., Limited impact of abiotic stress on surfactin production in planta and on disease resistance induced by Bacillus amyloliquefaciens S499 in tomato and bean. FEMS Microbiol. Ecol. 86 (2013), 505–519, 10.1111/1574-6941.12177.
Scholz, R., Vater, J., Budiharjo, A., Wang, Z., He, Y., Dietel, K., Schwecke, T., Herfort, S., Lasch, P., Borriss, R., Amylocyclicin, a novel circular bacteriocin produced by Bacillus amyloliquefaciens FZB42. J. Bacteriol. 196 (2014), 1842–1852, 10.1128/JB.01474-14.
Siguier, P., Pérochon, J., Lestrade, L., Mahillon, J., Chandler, M., ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 34 (2006), D32–D36, 10.1093/nar/gkj014.
Weber, T., Blin, K., Duddela, S., Krug, D., Kim, H.U., Bruccoleri, R., Lee, S.Y., Fischbach, M.A., Müller, R., Wohlleben, W., Breitling, R., antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters. Nucleic Acids Res., 2015, 10.1093/nar/gkv437 gkv437.
