[en] Mitochondrial F1FO-ATP synthase of chlorophycean algae is dimeric. It contains eight orthodox subunits (alpha, beta, gamma, delta, epsilon, OSCP, a and c) and nine atypical subunits (Asa1 to 9). These subunits build the peripheral stalk of the enzyme and stabilize its dimeric structure. The location of the 66.1kDa subunit Asa1 has been debated. On one hand, it was found in a transient subcomplex that contained membrane-bound subunits Asa1/Asa3/Asa5/Asa8/a (Atp6)/c (Atp9). On the other hand, Asa1 was proposed to form the bulky structure of the peripheral stalk that contacts the OSCP subunit in the F1 sector. Here, we overexpressed and purified the recombinant proteins Asa1 and OSCP and explored their interactions in vitro, using immunochemical techniques and affinity chromatography. Asa1 and OSCP interact strongly, and the carboxy-terminal half of OSCP seems to be instrumental for this association. In addition, the algal ATP synthase was partially dissociated at relatively high detergent concentrations, and an Asa1/Asa3/Asa5/Asa8/a/c10 subcomplex was identified. Furthermore, Far-Western analysis suggests an Asa1-Asa8 interaction. Based on these results, a model is proposed in which Asa1 spans the whole peripheral arm of the enzyme, from a region close to the matrix-exposed side of the mitochondrial inner membrane to the F1 region where OSCP is located. 3D models show elongated, helix-rich structures for chlorophycean Asa1 subunits. Asa1 subunit probably plays a scaffolding role in the peripheral stalk analogous to the one of subunit b in orthodox mitochondrial enzymes.
Disciplines :
Biochemistry, biophysics & molecular biology
Author, co-author :
Colina-Tenorio, Lilia; Universidad Nacional Autónoma de México > Instituto de Fisiología Celular > Departamento de Genética Molecular
Miranda Astudillo, Héctor Vicente ; Université de Liège - ULiège > Département des sciences de la vie > Génétique et physiologie des microalgues
Cano-Estrada, Araceli; Universidad Nacional Autónoma de México > Instituto de Fisiología Celular > Departamento de Genética Molecular
Vázquez-Acevedo, Miriam; Universidad Nacional Autónoma de México > Instituto de Fisiología Celular > Departamento de Genética Molecular
Cardol, Pierre ; Université de Liège > Département des sciences de la vie > Génétique et physiologie des microalgues
Remacle, Claire ; Université de Liège > Département des sciences de la vie > Génétique et physiologie des microalgues
González-Halphen, Diego; Universidad Nacional Autónoma de México > Instituto de Fisiología Celular > Departamento de Genética Molecular
Language :
English
Title :
Subunit Asa1 spans all the peripheral stalk of the mitochondrial ATP synthase of the chlorophycean alga Polytomella sp.
T. Xu, V. Pagadala, and D.M. Mueller Understanding structure, function, and mutations in the mitochondrial ATP synthase Microb. Cell 2 2015 105 125
A. Wächter, Y. Bi, S.D. Dunn, B.D. Cain, H. Sielaff, F. Wintermann, S. Engelbrecht, and W. Junge Two rotary motors in F-ATP synthase are elastically coupled by a flexible rotor and a stiff stator stalk Proc. Natl. Acad. Sci. U. S. A. 108 2011 3924 3929
J.E. Walker, and V.K. Dickson The peripheral stalk of the mitochondrial ATP synthase Biochim. Biophys. Acta 1757 2006 286 296
H. Seelert, and N.A. Dencher ATP synthase superassemblies in animals and plants: Two or more are better Biochim. Biophys. Acta 1807 2011 1185 1197
P. Paumard, J. Vaillier, B. Coulary, J. Schaeffer, V. Soubannier, D.M. Mueller, D. Brèthes, J.P. di Rago, and J. Velours The ATP synthase is involved in generating mitochondrial cristae morphology EMBO J. 21 2002 221 230
N.P. Balabaskaran, N.V. Dudkina, L.A. Kane, J.E. van Eyk, E.J. Boekema, M.W. Mather, and A.B. Vaidya Highly divergent mitochondrial ATP synthase complexes in Tetrahymena thermophila PLoS Biol. 8 2010 e1000418
A. Zikova, A. Schnaufer, R.A. Dalley, A.K. Panigrahi, and K.D. Stuart The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei PLoS Pathog. 5 2009 e1000436
E. Perez, M. Lapaille, H. Degand, L. Cilibrasi, A. Villavicencio-Queijeiro, P. Morsomme, D. González-Halphen, M.C. Field, C. Remacle, D. Baurain, and P. Cardol The mitochondrial respiratory chain of the secondary green alga Euglena gracilis shares many additional subunits with parasitic Trypanosomatidae Mitochondrion 19 Pt B 2014 338 349
M. Vázquez-Acevedo, P. Cardol, A. Cano-Estrada, M. Lapaille, C. Remacle, and D. González-Halphen The mitochondrial ATP synthase of chlorophycean algae contains eight subunits of unknown origin involved in the formation of an atypical stator-stalk and in the dimerization of the complex J. Bioenerg. Biomembr. 38 2006 271 282
R. van Lis, A. Atteia, G. Mendoza-Hernández, and D. González-Halphen Identification of novel mitochondrial protein components of Chlamydomonas reinhardtii. A proteomic approach Plant Physiol. 132 2003 318 330
A. Atteia, G. Dreyfus, and D. González-Halphen Characterization of the alpha and beta-subunits of the F0F1-ATPase from the alga Polytomella spp., a colorless relative of Chlamydomonas reinhardtii Biochim. Biophys. Acta 1320 1997 275 284
N.V. Dudkina, J. Heinemeyer, W. Keegstra, E.J. Boekema, and H.P. Braun Structure of dimeric ATP synthase from mitochondria: An angular association of monomers induces the strong curvature of the inner membrane FEBS Lett. 579 2005 5769 5772
N.V. Dudkina, S. Sunderhaus, H.P. Braun, and E.J. Boekema Characterization of dimeric ATP synthase and cristae membrane ultrastructure from Saccharomyces and Polytomella mitochondria FEBS Lett. 580 2006 3427 3432
A. Cano-Estrada, M. Vázquez-Acevedo, A. Villavicencio-Queijeiro, F. Figueroa-Martínez, H. Miranda-Astudillo, Y. Cordeiro, J.A. Mignaco, D. Foguel, P. Cardol, M. Lapaille, C. Remacle, S. Wilkens, and D. González-Halphen Subunit-subunit interactions and overall topology of the dimeric mitochondrial ATP synthase of Polytomella sp Biochim. Biophys. Acta 1797 2010 1439 1448
N.V. Dudkina, G.T. Oostergetel, D. Lewejohann, H.P. Braun, and E.J. Boekema Row-like organization of ATP synthase in intact mitochondria determined by cryo-electron tomography Biochim. Biophys. Acta 1797 2010 272 277
M. Allegretti, N. Klusch, D.J. Mills, J. Vonck, W. Kühlbrandt, and K.M. Davies Horizontal membrane-intrinsic α-helices in the stator a-subunit of an F-type ATP synthase Nature 521 2015 237 240
R. van Lis, G. Mendoza-Hernández, G. Groth, and A. Atteia New insights into the unique structure of the F0F1-ATP synthase from the chlamydomonad algae Polytomella sp. and Chlamydomonas reinhardtii Plant Physiol. 144 2007 1190 1199
A. Villavicencio-Queijeiro, M. Vázquez-Acevedo, A. Cano-Estrada, M. Zarco-Zavala, M. Tuena de Gómez, J.A. Mignaco, M.M. Freire, H.M. Scofano, D. Foguel, P. Cardol, C. Remacle, and D. González-Halphen The fully-active and structurally-stable form of the mitochondrial ATP synthase of Polytomella sp. is dimeric J. Bioenerg. Biomembr. 41 2009 1 13
M. Lapaille, A. Escobar-Ramírez, H. Degand, D. Baurain, E. Rodríguez-Salinas, N. Coosemans, M. Boutry, D. Gonzalez-Halphen, C. Remacle, and P. Cardol Atypical subunit composition of the chlorophycean mitochondrial F1FO-ATP synthase and role of Asa7 protein in stability and oligomycin resistance of the enzyme Mol. Biol. Evol. 27 2010 1630 1644
H. Miranda-Astudillo, A. Cano-Estrada, M. Vázquez-Acevedo, L. Colina-Tenorio, A. Downie-Velasco, P. Cardol, C. Remacle, L. Domínguez-Ramírez, and D. González-Halphen Interactions of subunits Asa2, Asa4 and Asa7 in the peripheral stalk of the mitochondrial ATP synthase of the chlorophycean alga Polytomella sp Biochim. Biophys. Acta 1837 2014 1 13
V.K. Dickson, J.A. Silvester, I.M. Fearnley, A.G. Leslie, and J.E. Walker On the structure of the stator of the mitochondrial ATP synthase EMBO J. 25 2006 2911 2918
L.A. Baker, I.N. Watt, M.J. Runswick, J.E. Walker, and J.L. Rubinstein Arrangement of subunits in intact mammalian mitochondrial ATP synthase determined by cryo-EM Proc. Natl. Acad. Sci. U. S. A. 109 2012 11,675 11,680
W.C. Lau, L.A. Baker, and J.L. Rubinstein Cryo-EM structure of the yeast ATP synthase J. Mol. Biol. 382 2008 1256 1264
C. Mellwig, and B. Böttcher A unique resting position of the ATP-synthase from chloroplasts J. Biol. Chem. 278 2003 18,544 18,549
I. Ogilvie, S. Wilkens, A.J. Rodgers, R. Aggeler, and R.A. Capaldi The second stalk: The delta-b subunit connection in ECF1FO Acta Physiol. Scand. Suppl. 643 1998 169 175
H. Schägger Denaturing electrophoretic techniques G. von Jagow, H. Schägger, A Practical Guide to Membrane Protein Purification 1994 Academic Press San Diego 59 79
U.K. Laemmli Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 1970 680 685
H. Schägger Native gel electrophoresis G. von Jagow, H. Schägger, A Practical Guide to Membrane Protein Purification 1994 Academic Press San Diego 81 104
M.A.K. Markwell, S.M. Hass, L.L. Biber, and N.E. Tolbert A modification of the Lowry procedure to simplify protein determination in membrane and lipoprotein samples Anal. Biochem. 87 1978 206 210
A. Atteia, R. van Lis, and S.I. Beale Enzymes of the heme biosynthetic pathway in the nonphotosynthetic alga Polytomella sp Eukaryot. Cell 4 2005 2087 2097
H. Schägger, H. Aquila, and G. Von Jagow Coomassie blue-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for direct visualization of polypeptides during electrophoresis Anal. Biochem. 173 1988 201 205
D. González-Halphen, M.A. Lindorfer, and R.A. Capaldi Subunit arrangement in beef heart complex III Biochemistry 27 1988 7021 7031
R.A. Hall Studying protein-protein interactions via blot overlay or Far Western blot Methods Mol. Biol. 261 2004 167 174
H. Towbin, T. Staehelin, and J. Gordon Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: Procedure and some applications Proc. Natl. Acad. Sci. U. S. A. 76 1979 4350 4354
J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
M. Källberg, H. Wang, S. Wang, J. Peng, Z. Wang, H. Lu, and J. Xu Template-based protein structure modeling using the RaptorX web server Nat. Protoc. 7 2012 1511 1522
W. Junge, H. Sielaff, and S. Engelbrecht Torque generation and elastic power transmission in the rotary F(O)F(1)-ATPase Nature 459 2009 364 370
A.G. Stewart, L.K. Lee, M. Donohoe, J.J. Chaston, and D. Stock The dynamic stator stalk of rotary ATPases Nat. Commun. 3 2012 687
S. Wilkens, and R.A. Capaldi ATP synthase's second stalk comes into focus Nature 393 1998 29
J. Vonck, K.Y. Pisa, N. Morgner, B. Brutschy, and V. Muller Three-dimensional structure of A1A0 ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus by electron microscopy J. Biol. Chem. 284 2009 10,110 10,119
Z. Zhang, Y. Zheng, H. Mazon, E. Milgrom, N. Kitagawa, E. Kish-Trier, A.J. Heck, P.M. Kane, and S. Wilkens Structure of the yeast vacuolar ATPase J. Biol. Chem. 283 2008 35,983 35,995
K.S. Wood, and S.D. Dunn Role of the asymmetry of the homodimeric b2 stator stalk in the interaction with the F1 sector of Escherichia coli ATP synthase J. Biol. Chem. 282 2007 31,920 31,927
K. Brandt, S. Maiwald, B. Herkenhoff-Hesselmann, K. Gnirß, J.C. Greie, S.D. Dunn, and G. Deckers-Hebestreit Individual interactions of the b subunits within the stator of the Escherichia coli ATP synthase J. Biol. Chem. 288 2013 24,465 24,479
M.F. Paul, B. Guerin, and J. Velours The C-terminal region of subunit 4 (subunit b) is essential for assembly of the F0 portion of yeast mitochondrial ATP synthase Eur. J. Biochem. 205 1992 163 172
W. Laubinger, and P. Dimroth Characterization of the ATP synthase of Propionigenium modestum as a primary sodium pump Biochemistry 27 1988 7531 7537
H. Stahlberg, D.J. Müller, K. Suda, D. Fotiadis, A. Engel, T. Meier, U. Matthey, and P. Dimroth Bacterial Na(+)-ATP synthase has an undecameric rotor EMBO Rep. 2 2001 229 233
M. Fritz, and V. Müller An intermediate step in the evolution of ATPases - the F1FO-ATPase from Acetobacterium woodii contains F-type and V-type rotor subunits and is capable of ATP synthesis FEBS J. 274 2007 3421 3428
K.Y. Pisa, H. Huber, M. Thomm, and V. Müller A sodium ion-dependent A1AO ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus FEBS J. 274 2007 3928 3938
F. Mayer, J.K. Lim, J.D. Langer, S.G. Kang, and V. Müller Na + transport by the A1AO-ATP synthase purified from Thermococcus onnurineus and reconstituted into liposomes J. Biol. Chem. 290 2015 6994 7002
J. Velours, and G. Arselin The Saccharomyces cerevisiae ATP synthase J. Bioenerg. Biomembr. 32 2000 383 390
M.D. Herron, J.D. Hackett, F.O. Aylward, and R.E. Michod Triassic origin and early radiation of multicellular volvocine algae Proc. Natl. Acad. Sci. U. S. A. 106 2009 3254 3258
P. Cardol, D. González-Halphen, A. Reyes-Prieto, D. Baurain, R.F. Matagne, and C. Remacle The mitochondrial oxidative phosphorylation proteome of Chlamydomonas reinhardtii deduced from the Genome Sequencing Project Plant Physiol. 137 2005 447 459
L.A. Lewis, and R.M. McCourt Green algae and the origin of land plants Am. J. Bot. 91 2004 1535 1556
F. Leliaert, D.R. Smith, H. Moreau, M.D. Herron, H. Verbruggen, C.F. Delwiche, and O. De Clerck Phylogeny and molecular evolution of the green algae Crit. Rev. Plant Sci. 31 2012 1 46