Vanderpoorten, Alain ; Université de Liège > Département de Biologie, Ecologie et Evolution > Biologie de l'évolution et de la conservation - aCREA-Ulg
Patino, J.
Werner, O
González-Mancebo, JM
Ros, RM
Language :
English
Title :
How to define nativeness in vagile organisms: lessons from the cosmopolitan moss Bryum argenteum on the island of Tenerife (Canary Islands)
Aigoin D.A., Devos N., Huttunen S., Ignatov M.S., González-Mancebo J.M., Vanderpoorten A. (2009) And if Engler was not completely wrong? Evidence for multiple evolutionary origins in the moss flora of Macaronesia. Evolution, 63, 3248-3257.
Bean A.R. (2007) A new system for determining which plant species are indigenous in Australia. Australian Systematic Botany, 20, 1-43.
Bergsten J., Nilsson A.N., Ronquist F. (2013) Bayesian tests of topology with an example from diving beetles. Systematic Biology, 62, 660-673.
Bonnet E., Van de Peer Y. (2002) zt: a software tool for simple and partial Mantel tests. Journal of Statistical Software, 7, 1-12.
Chytrý M., Maskell L.C., Pino J., Pyšek P., Vilà M., Font X., Smart S.M. (2008) Habitat invasions by alien plants: a quantitative comparison among Mediterranean, subcontinental and oceanic regions of Europe. Journal of Applied Ecology, 45, 448-458.
Darriba D., Taboada G.L., Doallo R., Posada D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772.
Denslow J.S., Space J.C., Thomas P.A. (2009) Invasive exotic plants in the tropical Pacific islands: patterns of diversity. Biotropica, 41, 162-170.
Dlugosch K.M., Parker I.M. (2008) Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions. Molecular Ecology, 17, 431-449.
Drummond A.J., Suchard M.A., Xie D., Rambaut A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29, 1969-1973.
Essl F., Steinbauer K., Dullinger S., Mang T., Moser D. (2013) Telling a different story: a global assessment of bryophyte invasions. Biological Invasions, 15, 1933-1946.
Essl F., Dullinger S., Moser D., Steinbauer K., Mang T. (2014) Macroecology of global bryophyte invasions at different invasion stages. Ecography, 37, 1-11.
Excoffier L., Laval G., Schneider S. (2005) Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 10, 47-50.
Fu Y.X. (1996) New statistical tests of neutrality for DNA samples from a population. Genetics, 143, 557-570.
Fuentes-Utrilla P., Venturas M., Hollingsworth P.M., Squirrell J., Collada C., Stone G.N., Gil L. (2014) Extending glacial refugia for a European tree: genetic markers show that Iberian populations of white elm are native relicts and not introductions. Heredity, 112, 105-113.
Fussi B., Bonello J., Calleja E., Heinze B. (2012) Combin ing the use of molecular techniques and archival documentary evidence to trace the origin of Populus alba in a Central Mediterranean archipelago. European Journal of Forest Research, 131, 347-354.
Grundmann M., Ansell S.W., Russell S.J., Koch M.A., Vogel J.C. (2007) Genetic structure of the widespread and common Mediterranean bryophyte Pleurochaete squarrosa (Brid.) Lindb. (Pottiaceae) evidence from nuclear and plastidic DNA sequence variation and allozymes. Molecular Ecology, 16, 709-722.
Hall T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
Hardy O.J., Vekemans X. (2002) SPAGeDI: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618-620.
Hassel K., Söderstöm L. (2005) The expansion of the neophytes Orthodontium lineare and Campylopus introflexus in Britain and continental Europe. Journal of the Hattori Botanical Laboratory, 97, 183-193.
Hassel K., Såstad S.M., Gunnarsson U., Söderström L. (2005) Genetic variation and structure in the expanding moss Pogonatum dentatum in its area of origin and in a recently colonised area. American Journal of Botany, 92, 1684-1690.
Heled J., Drummond A. (2008) Bayesian inference of population size history from multiple loci. BMC Evolutionary Biology, 8, 289.
Horsley K., Stark L.R., McLetchie D.N. (2011) Does the silver moss Bryum argenteum exhibit sex-specific patterns in vegetative growth rate, asexual fitness or prezygotic reproductive investment? Annals of Botany, 107, 897-907.
Hutsemekers V., Hardy O.J., Mardulyn P., Shaw A.J., Vanderpoorten A. (2010) Macroecological patterns of genetic structure and diversity in the aquatic moss Platyhypnidium riparioides. New Phytologist, 185, 852-864.
Hutsemékers V., Szövényi P., Shaw A.J., González-Mancebo J.M., Muñoz J., Vanderpoorten A. (2011) Oceanic islands are not sinks of biodiversity in spore-producing plants. Proceedings of the National Academy of Sciences USA, 108, 18989-18994.
Hutsemékers V., Hardy O.J., Vanderpoorten A. (2013) Does water facilitate gene flow in spore-producing plants? Insights from the fine-scale genetic structure of the aquatic moss Rhynchostegium riparioides (Brachytheciaceae). Aquatic Botany, 108, 1-6.
Huttunen S., Hedenäs L., Ignatov M.S., Devos N., Vanderpoorten A. (2008) Origin and evolution of the northern hemisphere disjunction in the moss genus Homalothecium (Brachytheciaceae). American Journal of Botany, 95, 720-730.
Jewell M., Frère C.H., Harris-Shultz K., Anderson W.F., Godwin I.D., Lambrides C.J. (2012) Phylogenetic analysis reveals multiple introductions of Cynodon species in Australia. Molecular Phylogenetics and Evolution, 65, 390-396.
Kay K.M., Whittall J.B., Hodges S.A. (2006) A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evolutionary Biology, 6, 36.
Korpelainen H., Jägerbrand A., von Cräutlein M. (2012) Genetic structure of mosses Pleurozium schreberi (Willd. ex Brid.) Mitt and Racomitrium lanuginosum Hedw Brid. along altitude gradients in Hokkaido, Japan. Journal of Bryology, 34, 309-312.
Korpelainen H., von Cräutlein M., Kostamo K., Virtanen V. (2013) Spatial genetic structure of aquatic bryophytes in a connected lake system. Plant Biology, 15, 514-521.
Košnar J., Herbstová M., Kolář F., Koutecký P., Kučera J. (2012) A case study of intragenomic ITS variation in bryophytes: Assessment of gene flow and role of polyploidy in the origin of European taxa of the Tortula muralis (Musci: Pottiaceae) complex. Taxon, 61, 709-720.
Laenen B., Désamore A., Devos N., Shaw A.J., González-Mancebo J.M., Carine M.A., Vanderpoorten A. (2011) Macaronesia: a source of hidden genetic diversity for post-glacial recolonization of western Europe in the leafy liverwort Radula lindenbergiana. Journal of Biogeography, 38, 631-639.
Librado P., Rozas J. (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
Loiselle B.A., Sork V.L., Nason J., Graham C. (1995) Spatial genetic structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). American Journal of Botany, 82, 1420-1425.
Matzke M.J. (2014) Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. Systematic Biology, 63, 951-970.
May S., Beebee T.J.C. (2010) Recent introduction or ancient ancestry? Use of genetic evidence to investigate the origins of range edge populations in natterjack toads (Bufo calamita). Conservation Genetics, 11, 293-300.
McDaniel S.F., Shaw A.J. (2005) Selective sweeps and intercontinental migration in the cosmopolitan moss Ceratodon purpureus (Hedw.) Brid. Molecular Ecology, 14, 1121-1132.
Medina N.G., Draper I., Lara F. (2011) Biogeography of mosses and allies: does size matter? In: Fontaneto D. (Ed.), Biogeography of microscopic organisms. Is everything small everywhere? Cambridge University Press, Cambridge, UK, pp 209-233.
Miller N.G., Trigoboff N. (2001) A European feather moss, Pseudoscleropodium purum, naturalized widely in New York State in cemeteries. The Bryologist, 104, 98-103.
Müller K. (2005) SeqState: primer design and sequence statistics for phylogenetic DNA datasets. Applied Bioinformatics, 4, 65-69.
Nagy L.G., Kocsubé S., Csanádi Z., Kovács G.M., Petkovits T., Vágvölgyi C., Papp T. (2012) Re-mind the gap! Insertion-deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi. PLoS ONE, 11, e49794.
Nieto Feliner G., Rosselló J.A. (2007) Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. Molecular Phylogenetics and Evolution, 44, 911-919.
Pagel M., Meade A., Barker D. (2004) Bayesian estimation of ancestral character states on phylogenies. Systematic Biology, 53, 673-684.
Patiño J., Bisang I., Hedenäs L., Dirkse G., Bjarnason A.H., Ah-Peng C., Vanderpoorten A. (2013a) Baker's law and the island syndromes in bryophytes. Journal of Ecology, 101, 1245-1255.
Patiño J., Medina R., Vanderpoorten A., González-Mancebo J.M., Werner O., Devos N., Mateo R.G., Lara F., Ros R.M. (2013b) Origin and fate of the single-island endemic moss Orthotrichum handiense. Journal of Biogeography, 40, 857-868.
Peakall R., Smouse P.E. (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
Pisa S., Werner O., Vanderpoorten A., Magdy M., Ros R.M. (2013) Elevational patterns of genetic variation in the cosmopolitan moss Bryum argenteum (Bryaceae). American Journal of Botany, 100, 2000-2008.
Pisa S., Biersma E.M., Convey P., Patiño J., Vanderpoorten A., Werner O., Ros R.M. (2014) The cosmopolitan moss Bryum argenteum in Antarctica: recent colonisation or in situ survival? Polar Biology, 37, 469-1477.
Pons O., Petit R.J. (1996) Measuring and testing genetic differentiation with ordered versus unordered alleles. Genetics, 144, 1237-1245.
Pysek P. (2003) How reliable are data on alien species in Flora Europaea? Flora, 198, 499-507.
Rambaut A., Drummond A.J. (2009) Tracer. Version 1.5. Molecular evolution, phylogenetics and epidemiology. Available from http://tree.bio.ed.ac.uk/software/tracer/ (accessed 5 November 2014).
Rando J.C., Cabrera V.M., Larruga J.M., Hernández M., González A.M., Pinto F., Bandelt H.J. (1999) Phylogeographic patterns of mtDNA reflecting the colonization of the Canary Islands. Annals of Human Genetics, 63, 413-428.
Schuster R.M. (1983) Phytogeography of the Bryophyta. In: Schuster R.M. (Ed), New Manual of Bryology. Hattori Botanical Laboratory, Nichinan, Japan, pp 463-626.
Simmons M.P., Ochoterena H. (2000) Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology, 49, 369-381.
Söderström L. (1992) Invasions and range expansions and contractions of bryophytes. In: Bates J.W., Farmer A.M. (Eds), Bryophytes and lichens in a changing environment. Clarendon Press, Oxford, UK, pp 131-158.
St. Quinton J.M., Fay M.F., Ingrouille M., Faull J. (2011) Characterization of Rubus niveus: a prerequisite of its biological control in oceanic islands. Biocontrol Science and Technology, 21, 733-752.
Stenøien H.K. (2008) Slow molecular evolution in 18S rDNA, rbcL and nad5 genes of mosses compared with higher plants. Journal of Evolutionary Biology, 21, 566-571.
Stieperaere H. (1994) Lophocolea semiteres (Lehm.) Mitt. in Belgium and The Netherlands, another antipodal bryophyte spreading on the European continent. Lindbergia, 19, 29-36.
Tajima F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.
Vanderpoorten A., Devos N., Goffinet B., Hardy O.J., Shaw A.J. (2008) The barriers to oceanic island radiation in bryophytes: insights from the phylogeography of the moss Grimmia montana. Journal of Biogeography, 35, 654-663.
Vanderpoorten A., Lambinon J., Hardy O.J., Raspé O. (2011) Two reproductively isolated cytotypes and a swarm of highly inbred, disconnected populations: a glimpse into Salicornia's evolutionary history and challenging taxonomy. Journal of Evolutionary Biology, 24, 630-644.
Webber B.L., Scott J.K. (2012) Rapid global change: implications for defining natives and aliens. Global Ecology and Biogeography, 21, 305-311.
Werner O., Guerra J. (2004) Molecular phylogeography of the moss Tortula muralis Hedw. (Pottiaceae) based on chloroplast rps4 gene sequence data. Plant Biology, 6, 147-157.
Williamson M., Dehnen-Schmutz K., Kühn I., Hill M., Klotz S., Milbau A., Stout J., Pyšek P. (2009) The distribution of range sizes of native and alien plants in four European countries and the effects of residence time. Diversity and Distributions, 15, 158-166.
Xie W., Lewis P.O., Fan Y., Kuo L., Chen M.-H. (2011) Improving marginal likelihood estimation for Bayesian phylogenetic model selection. Systematic Biology, 60, 150-160.