Identification of Clostridium tyrobutyricum and related species using sugar fermentation, organic acid formation and DNA probes based on 16S rRNA sequences
Klijn, N.; Bovie, C.; Dommes, Jacqueset al.
1994 • In Systematic and Applied Microbiology, 17 (2), p. 249-256
Dommes, Jacques ; Université de Liège - ULiège > Département des sciences de la vie > Biologie moléculaire et biotechnologie végétales
Hoolwerf, J.D.
Van der Waals, C.B.
Weerkamp, A.H.
Nieuwenhof, F.F.J.
Language :
English
Title :
Identification of Clostridium tyrobutyricum and related species using sugar fermentation, organic acid formation and DNA probes based on 16S rRNA sequences
Barry T., Powell R., Gannon F. (1990) A general method to generate DNA probes for microorganisms. Bio/technology 8:233-236.
Bergère J.-L., Sivelä S. (1990) Detection and enumeration of clostridial spores related to cheese quality — classical and new methods. Methods of detection and prevention of anaerobic spore formers in relation to the quality of cheese. Bulletin of the International Dairy Federation, no. 251 , International Dairy Federation, Brussels, Belgium; 15-23.
Brosius J., Palmer M.L., Kennedy J.P., Noller H.F. (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 75:4801-4805.
Casanova J.-L., Pannetier C., Jaulin C., Kourilsky P. (1990) Optimal conditions for directly sequencing double-stranded PCR products with Sequenase. Nucleic Acids Res. 18:4028.
Cato E.P., George W.L., Finegold S.M. (1986) Genus Clostridium Prazmowski 1880, 23AL. Bergey's manual of systematic bacteriology , H.A. Sneath, N.S. Mair, M.E. Sharpe, Williams & Wilkins, Baltimore; 2:1141-1200.
Colleran G.J., Barry T., Powell R., Dunican L.K., Gannon F. (1990) Rapid analysis of an aberrant region of the ribosomal operon from a selection of clostridial species using PCR: a new taxonomic approach. Proceedings of the Fifth European Congress on Biotechnology , C. Christiansen, L. Munck, J. Villadsen, Munksgaard International Publishers, Copenhagen; 1:410-413.
Collins M.D., Rodrigues U.M., Dainty R.H., Edwards R.A., Roberts T.A. (1992) Taxonomic studies on a psychrophilic Clostridium from vacuum-packed beef: Description of Clostridium estertheticum sp. nov. FEMS Microbiol. Lett. 96:234-240.
Higgins D.G., Sharp P.M. (1988) CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73:2378-3244.
Johnson J.L. (1981) Genetic characterization. Manual of methods for general microbiology , P. Gerhardt, G.E. Murray, American Society for Microbiology, Washington; 450-475.
Kane M.D., Brauman A., Breznak J.A. (1991) Clostridium mayombei sp. nov., an H2/Co2 acetogenic bacterium from the gut of the African soil-feeding termite, Cubitermes speciosus. Arch. Microbiol. 156:99-104.
Keller G.H., Manak M.M. DNA probes, Macmillan Publishers Ltd., United Kingdom; 1989.
Magot M., Carlier J.-P., Popoff M.R. (1983) Identifiction of Clostridium butyricum and Clostridium beijerinckii by gas-liquid chromatography and sugar fermentation: Correlation with DNA homologies and electrophoretic patterns. J. Gen. Microbiol. 129:2837-2845.
Matteuzzi D., Trovatelli L.D., Biavati B., Zani G. (1977) Clostridia from Grana cheese. J. Appl. Bactriol. 43:375-382.
Meer, Ludwig W., de Vos W.M. (1993) Characterisation of a ribosomal RNA gene cluster for Clostridium tyrobutyricum: Phylogenetic positioning based on the 16S and 23S nucleotide sequences. System. Appl. Microbiol. 16:201-207.
Neefs J.M., van de Peer Y., Herdriks L., de Wachter R. (1990) Compilation of small ribosomal RNA sequences. Nucleic Acids Res. 18:2237-2317.
Rapp M. (1987) Erfassung von Clostridien und Nachweis von Clostridium tyrobutyricum unter Praxisverhältnissen. Deutsche Molkerei Zeitung 108:76-82.
Saiki R.K., Gelfand D.H., Stoffel S., Schauf S.J., Highueni R.G., Horn G.T., Mulks K.B., Erlich H.A. (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-491.
Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning. A laboratory manual, 2nd ed., Cold Spring Harbor Laboratory Press, Plain View, N.Y.; 1989.
Weisburg W.G., Tully J.G., Rose D.L., Petzel J.P., Oyaizu H., Yang D., Mandelco L., Sechrest J., Lawrence T.G., van Etten J., Maniloff J., Woese C.R. (1989) A phylogenetic analysis of the mycoplasmas: Basis for their classification. J. Bacteriol. 171:6455-6467.
Wilkinson S.R., Young M. (1993) Wide diversity of genome size among different strains of Clostridium acetobutylicum. J. Gen. Microbiol. 139:1069-1076.
Wilson K.H., Blitchington R., Hindenach B., Greene R.C. (1988) Species-specific oligonucleotide probes for rRNA of Clostridium difficile and related species. J. Clin. Microbiol. 26:2484-2488.
