[en] Multifactor Dimensionality Reduction (MDR) was originally developed to detect gene-gene interactions in the domain of human genetics. MDR algorithm collapses high-dimensional genetic data, into a single dimension thus permitting interactions to be detected in relatively small sample sizes. To deal with the large volume of data, we demonstrate the experiment of MDR software which was written in Java programming language and compare with native method. We focus on execution time, memory usage and CPU usage and describe the results.
Disciplines :
Engineering, computing & technology: Multidisciplinary, general & others
Author, co-author :
Chaichoompu, Kridsadakorn ; Université de Liège - ULiège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Bioinformatique
Kittitornkun, Surin
Tongsima, Sissades
Language :
English
Title :
Performance comparison of Multifactor Dimensionality Reduction: JVM vs. Native code
Publication date :
2006
Event name :
ITC-CSCC: International Technical Conference on Circuits Systems, Computers and Communications. 2006
Event date :
10-07-2006 to 13-07-2006
Audience :
International
Main work title :
ITC-CSCC: International Technical Conference on Circuits Systems, Computers and Communications. 2006
