CLCN7; hamartomas; osteopetrosis; lysosomal storage; ion homeostasis; Belgian Blue Cattle
Abstract :
[en] Chloride/proton exchange by the lysosomal anion transporter ClC-7/Ostm1 is of pivotal importance for the physiology of lysosomes and bone resorption. Mice lacking either ClC-7 or Ostm1 develop a lysosomal storage disease and mutations in either protein have been found to underlie osteopetrosis in mice and humans. Some human disease-causing CLCN7 mutations accelerate the usually slow voltage-dependent gating of ClC-7/Ostm1. However, it has remained unclear whether the fastened kinetics is indeed causative for the disease. Here we identified and characterized a new deleterious ClC-7 mutation in Belgian Blue Cattle with a severe symptomatology including peri-natal lethality and in most cases gingival hamartomas. By autozygosity mapping and genome-wide sequencing we found a handful of candidate variants, including a cluster of three private SNPs causing the substitution of a conserved tyrosine in the CBS2 domain of ClC-7 by glutamine. The case for ClC-7 was strengthened by subsequent examination of affected calves that revealed severe osteopetrosis. The Y750Q mutation largely preserved the lysosomal localization and assembly of ClC-7/Ostm1, but drastically accelerated its activation by membrane depolarization. These data provide first evidence that accelerated ClC-7/Ostm1 gating per se is deleterious, highlighting a physiological importance of the slow voltage-activation of ClC-7/Ostm1 in lysosomal function and bone resorption.
Research Center/Unit :
Giga-Genetics - ULiège
Disciplines :
Veterinary medicine & animal health Biochemistry, biophysics & molecular biology Genetics & genetic processes
Author, co-author :
Sartelet, Arnaud ✱; Université de Liège - ULiège > Département de production animales > GIGA-R: Génomique animale
Ahariz, Naïma ; Université de Liège - ULiège > Département de productions animales > GIGA-R : Génomique animale
Cambisano, Nadine ; Université de Liège - ULiège > Département de productions animales > GIGA-R : Génomique animale
Jentsch, Thomas J.; FMP (Leibniz-Institut fuer Molekulare Pharmakologie) and MDC (Max-Delbrueck-Centrum fuer Molekulare Medizin) > Robert-Roessle-Strasse, 10 > 13125 BERLIN - GERMANY
Charlier, Carole ; Université de Liège - ULiège > Département de productions animales > GIGA-R : Génomique animale
✱ These authors have contributed equally to this work.
Language :
English
Title :
A missense mutation accelerating the gating of the lysosomal Cl-/H+-exchanger ClC-7/Ostm1 causes osteopetrosis with gingival hamartomas in cattle.
Publication date :
January 2014
Journal title :
Disease Models and Mechanisms
ISSN :
1754-8411
eISSN :
1754-8403
Publisher :
Company of Biologists, Cambridge, United Kingdom
Volume :
7
Pages :
119-128
Peer reviewed :
Peer Reviewed verified by ORBi
Name of the research project :
Rilouke! Tares et Pathologies à Composante Héréditaire en Race Blanc-Bleu Belge, Vers le Développement d’un Réseau Intégré de Lutte Je164/7 and SFB740
Funders :
DGA - Région wallonne. Direction générale de l'Agriculture ULiège - Université de Liège F.R.S.-FNRS - Fonds de la Recherche Scientifique BELSPO - SPP Politique scientifique - Service Public Fédéral de Programmation Politique scientifique DFG - Deutsche Forschungsgemeinschaft
Adzhubei, I. A., Schmidt, S., Peshkin, L., Ramensky, V. E., Gerasimova, A., Bork, P., Kondrashov, A. S. and Sunyaev, S. R. (2010). A method and server for predicting damaging missense mutations. Nat. Methods 7, 248-249.
Barvencik, F., Kurth, I., Koehne, T., Stauber, T., Zustin, J., Tsiakas, K., Ludwig, C. F., Beil, F. T., Pestka, J. M., Hahn, M. et al. (2013). CLCN7 and TCIRG1 mutations differentially affect bone matrix mineralization in osteopetrotic individuals. J. Bone Miner. Res. [Epub ahead of print] doi:10.1002/jbmr.2100.
Browning, S. R. and Browning, B. L. (2007). Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81, 1084-1097.
Chalhoub, N., Benachenhou, N., Rajapurohitam, V., Pata, M., Ferron, M., Frattini, A., Villa, A. and Vacher, J. (2003). Grey-lethal mutation induces severe malignant autosomal recessive osteopetrosis in mouse and human. Nat. Med. 9, 399-406.
Charlier, C., Coppieters, W., Rollin, F., Desmecht, D., Agerholm, J. S., Cambisano, N., Carta, E., Dardano, S., Dive, M., Fasquelle, C. et al. (2008). Highly effective SNP-based association mapping and management of recessive defects in livestock. Nat. Genet. 40, 449-454.
Charlier, C., Agerholm, J. S., Coppieters, W., Karlskov-Mortensen, P., Li, W., de Jong, G., Fasquelle, C., Karim, L., Cirera, S., Cambisano, N. et al. (2012). A deletion in the bovine FANCI gene compromises fertility by causing fetal death and brachyspina. PLoS ONE 7, e43085.
Coury, F., Zenger, S., Stewart, A. K., Stephens, S., Neff, L., Tsang, K., Shull, G. E., Alper, S. L., Baron, R. and Aliprantis, A. O. (2013). SLC4A2-mediated Cl-/HCO3 - exchange activity is essential for calpain-dependent regulation of the actin cytoskeleton in osteoclasts. Proc. Natl. Acad. Sci. USA 110, 2163-2168.
Drost, M. (2007). Complications during gestation in the cow. Theriogenology 68, 487-491.
Druet, T. and Georges, M. (2010). A hidden markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping. Genetics 184, 789-798.
Fasquelle, C., Sartelet, A., Li, W., Dive, M., Tamma, N., Michaux, C., Druet, T., Huijbers, I. J., Isacke, C. M., Coppieters, W. et al. (2009). Balancing selection of a frame-shift mutation in the MRC2 gene accounts for the outbreak of the Crooked Tail Syndrome in Belgian Blue Cattle. PLoS Genet. 5, e1000666.
Feng, L., Campbell, E. B., Hsiung, Y. and MacKinnon, R. (2010). Structure of a eukaryotic CLC transporter defines an intermediate state in the transport cycle. Science 330, 635-641.
Friedrich, T., Breiderhoff, T. and Jentsch, T. J. (1999). Mutational analysis demonstrates that ClC-4 and ClC-5 directly mediate plasma membrane currents. J. Biol. Chem. 274, 896-902.
Grobet, L., Martin, L. J., Poncelet, D., Pirottin, D., Brouwers, B., Riquet, J., Schoeberlein, A., Dunner, S., Ménissier, F., Massabanda, J. et al. (1997). A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle. Nat. Genet. 17, 71-74.
Jentsch, T. J. (2008). CLC chloride channels and transporters: from genes to protein structure, pathology and physiology. Crit. Rev. Biochem. Mol. Biol. 43, 3-36.
Kasper, D., Planells-Cases, R., Fuhrmann, J. C., Scheel, O., Zeitz, O., Ruether, K., Schmitt, A., Poët, M., Steinfeld, R., Schweizer, M. et al. (2005). Loss of the chloride channel ClC-7 leads to lysosomal storage disease and neurodegeneration. EMBO J. 24, 1079-1091.
Koivusalo, M., Steinberg, B. E., Mason, D. and Grinstein, S. (2011). In situ measurement of the electrical potential across the lysosomal membrane using FRET. Traffic 12, 972-982.
Kornak, U., Kasper, D., Bösl, M. R., Kaiser, E., Schweizer, M., Schulz, A., Friedrich, W., Delling, G. and Jentsch, T. J. (2001). Loss of the ClC-7 chloride channel leads to osteopetrosis in mice and man. Cell 104, 205-215.
Lange, P. F., Wartosch, L., Jentsch, T. J. and Fuhrmann, J. C. (2006). ClC-7 requires Ostm1 as a β-subunit to support bone resorption and lysosomal function. Nature 440, 220-223.
Leisle, L., Ludwig, C. F., Wagner, F. A., Jentsch, T. J. and Stauber, T. (2011). ClC-7 is a slowly voltage-gated 2Cl-/1H+-exchanger and requires Ostm1 for transport activity. EMBO J. 30, 2140-2152.
Li, H. and Durbin, R. (2009). Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics 25, 1754-1760.
Li, X., Shimada, K., Showalter, L. A. and Weinman, S. A. (2000). Biophysical properties of ClC-3 differentiate it from swelling-activated chloride channels in Chinese hamster ovary-K1 cells. J. Biol. Chem. 275, 35994-35998.
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R.; 1000 Genome Project Data Processing Subgroup (2009). The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079.
Ludwig, C. F., Ullrich, F., Leisle, L., Stauber, T., and Jentsch, T. J. (2013). Common gating of both CLC subunits underlies voltage-dependent activation of the 2Cl- /1H+ exchanger ClC-7/Ostm1. J. Biol. Chem. 288, 28611-28619.
Lupski, J. R., Reid, J. G., Gonzaga-Jauregui, C., Rio Deiros, D., Chen, D. C., Nazareth, L., Bainbridge, M., Dinh, H., Jing, C., Wheeler, D. A. et al. (2010). Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy. N. Engl. J. Med. 362, 1181-1191.
Luzzi, V., Consoli, G., Daryanani, V., Santoro, G., Sfasciotti, G. L. and Polimeni, A. (2006). Malignant infantile osteopetrosis: dental effects in paediatric patients. Case reports. Eur. J. Paediatr. Dent. 7, 39-44.
Marchler-Bauer, A., Lu, S., Anderson, J. B., Chitsaz, F., Derbyshire, M. K., DeWeese-Scott, C., Fong, J. H., Geer, L. Y., Geer, R. C., Gonzales, N. R. et al. (2011). CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 39 Database issue, D225-D229.
McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M. et al. (2010). The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303.
Meyers, S. N., McDaneld, T. G., Swist, S. L., Marron, B. M., Steffen, D. J., O'Toole, D., O'Connell, J. R., Beever, J. E., Sonstegard, T. S. and Smith, T. P. (2010). A deletion mutation in bovine SLC4A2 is associated with osteopetrosis in Red Angus cattle. BMC Genomics 11, 337.
Neagoe, I., Stauber, T., Fidzinski, P., Bergsdorf, E. Y. and Jentsch, T. J. (2010). The late endosomal ClC-6 mediates proton/chloride countertransport in heterologous plasma membrane expression. J. Biol. Chem. 285, 21689-21697.
Ng, S. B., Turner, E. H., Robertson, P. D., Flygare, S. D., Bigham, A. W., Lee, C., Shaffer, T., Wong, M., Bhattacharjee, A., Eichler, E. E. et al. (2009). Targeted capture and massively parallel sequencing of 12 human exomes. Nature 461, 272-276.
Pressey, S. N., O'Donnell, K. J., Stauber, T., Fuhrmann, J. C., Tyynelä, J., Jentsch, T. J. and Cooper, J. D. (2010). Distinct neuropathologic phenotypes after disrupting the chloride transport proteins ClC-6 or ClC-7/Ostm1. J. Neuropathol. Exp. Neurol. 69, 1228-1246.
Robinson, J. T., Thorvaldsdóttir, H., Winckler, W., Guttman, M., Lander, E. S., Getz, G. and Mesirov, J. P. (2011). Integrative genomics viewer. Nat. Biotechnol. 29, 24-26.
Sartelet, A., Druet, T., Michaux, C., Fasquelle, C., Géron, S., Tamma, N., Zhang, Z., Coppieters, W., Georges, M. and Charlier, C. (2012a). A splice site variant in the bovine RNF11 gene compromises growth and regulation of the inflammatory response. PLoS Genet. 8, e1002581.
Sartelet, A., Klingbeil, P., Franklin, C. K., Fasquelle, C., Géron, S., Isacke, C. M., Georges, M. and Charlier, C. (2012b). Allelic heterogeneity of Crooked Tail Syndrome: result of balancing selection? Anim. Genet. 43, 604-607.
Schrider, D. R., Hourmozdi, J. N. and Hahn, M. W. (2011). Pervasive multinucleotide mutational events in eukaryotes. Curr. Biol. 21, 1051-1054.
Schulz, P., Werner, J., Stauber, T., Henriksen, K. and Fendler, K. (2010). The G215R mutation in the Cl-/H+-antiporter ClC-7 found in ADO II osteopetrosis does not abolish function but causes a severe trafficking defect. PLoS ONE 5, e12585.
Sim, N. L., Kumar, P., Hu, J., Henikoff, S., Schneider, G. and Ng, P. C. (2012). SIFT web server: predicting effects of amino acid substitutions on proteins. Nucleic Acids Res. 40 Web Server issue, W452-W457.
Stauber, T. and Jentsch, T. J. (2010). Sorting motifs of the endosomal/lysosomal CLC chloride transporters. J. Biol. Chem. 285, 34537-34548.
Stauber, T. and Jentsch, T. J. (2013). Chloride in vesicular trafficking and function. Annu. Rev. Physiol. 75, 453-477.
Stauber, T., Weinert, S. and Jentsch, T. J. (2012). Cell biology and physiology of CLC chloride channels and transporters. Compr. Physiol. 2, 1701-1744.
Steinberg, B. E., Huynh, K. K., Brodovitch, A., Jabs, S., Stauber, T., Jentsch, T. J. and Grinstein, S. (2010). A cation counterflux supports lysosomal acidification. J. Cell Biol. 189, 1171-1186.
Steward, C. G. (2003). Neurological aspects of osteopetrosis. Neuropathol. Appl. Neurobiol. 29, 87-97.
Sui, W., Ou, M., Liang, J., Ding, M., Chen, J., Liu, W., Xiao, R., Meng, X., Wang, L., Pan, X. et al. (2013). Rapid gene identification in a Chinese osteopetrosis family by whole exome sequencing. Gene 516, 311-315.
Teitelbaum, S. L. (2000). Bone resorption by osteoclasts. Science 289, 1504-1508.
Tolar, J., Teitelbaum, S. L. and Orchard, P. J. (2004). Osteopetrosis. N. Engl. J. Med. 351, 2839-2849.
Volpi, L., Roversi, G., Colombo, E. A., Leijsten, N., Concolino, D., Calabria, A., Mencarelli, M. A., Fimiani, M., Macciardi, F., Pfundt, R. et al. (2010). Targeted next-generation sequencing appoints c16orf57 as clericuzio-type poikiloderma with neutropenia gene. Am. J. Hum. Genet. 86, 72-76.
Wartosch, L., Fuhrmann, J. C., Schweizer, M., Stauber, T. and Jentsch, T. J. (2009). Lysosomal degradation of endocytosed proteins depends on the chloride transport protein ClC-7. FASEB J. 23, 4056-4068.
Weinert, S., Jabs, S., Supanchart, C., Schweizer, M., Gimber, N., Richter, M., Rademann, J., Stauber, T., Kornak, U. and Jentsch, T. J. (2010). Lysosomal pathology and osteopetrosis upon loss of H+-driven lysosomal Cl- accumulation. Science 328, 1401-1403.
Wu, J., Glimcher, L. H. and Aliprantis, A. O. (2008). HCO3 -/Cl- anion exchanger SLC4A2 is required for proper osteoclast differentiation and function. Proc. Natl. Acad. Sci. USA 105, 16934-16939.
Xue, Y., Wang, W., Mao, T. and Duan, X. (2012). Report of two Chinese patients suffering from CLCN7-related osteopetrosis and root dysplasia. J. Craniomaxillofac. Surg. 40, 416-420.
Zhang, Z., Guillaume, F., Sartelet, A., Charlier, C., Georges, M., Farnir, F. and Druet, T. (2012). Ancestral haplotype-based association mapping with generalized linear mixed models accounting for stratification. Bioinformatics 28, 2467-2473.