ABDELNOOR RV, YULE R, ELO A, CHRISTENSEN AC, MEYER-GAUEN G, MACKENZIE SA (2003). Substoichiometric shifting in the plant mitochondrial genome is influenced by a gene homologous to MutS. Proc Natl Acad Sci USA 100: 5968-5973.
ANDERSON S, BANKIER AT, BARRELL BG, DE BRUIJN MHL, COULSON AR, DROUIN J, EPERON IC, NIERLICH DP, ROE BA, SANGER F, SCHREIER PH, SMITH AJH, STADEN R, YOUNG IG (1981). Sequence and organization of the human mitochondrial genome. Nature 290: 457-465.
ARRIETA-MONTIEL MP, SHEDGE V, DAVILA J, CHRISTENSEN AC, MACKENZIE SA (2009). Diversity of the Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity. Genetics 183: 1261-1268.
BARBIERI MR, LAROSA V, NOUET C, SUBRAHMANIAN N, REMACLE C, HAMEL PP (2011). A forward genetic screen identifies mutants deficient for mitochondrial complex I assembly in Chlamydomonas reinhardtii. Genetics 188: 349-358.
BLAKELY EL, MITCHELL AL, FISHER N, MEUNIER B, NIJTMANS LG, SCHAEFER AM, JACKSON MJ, TURNBULL DM, TAYLOR RW (2005). A mitochondrial cytochrome b mutation causing severe respiratory chain enzyme deficiency in humans and yeast. FEBS J 272: 3583-3592.
BONNEFOY N, FOX TD (2000). In vivo analysis of mutated initiation codons in the mitochondrial COX2 gene of Saccharomyces cerevisiae fused to the reporter gene ARG8m reveals lack of downstream reinitiation. Mol Gen Genet 262: 1036-1046.
BONNEFOY N, FOX TD (2007). Directed alteration of Saccharomyces cerevisiae mitochondrial DNA by biolistic transformation and homologous recombination. Methods Mol Biol 372: 153-166.
BONNEFOY N, FOX TD (2002). Genetic transformation of Saccharomyces cerevisiae mitochondria. Methods Enzymol 350: 97-111.
BONNEFOY N, BSAT N, FOX TD (2001). Mitochondrial translation of Saccharomyces cerevisiae COX2 mRNA is controlled by the nucleotide sequence specifying the pre-Cox2p leader peptide. Mol Cell Biol 21: 2359-2372.
CARDOL P (2011). Mitochondrial NADH:ubiquinone oxidoreductase (complex I) in eukaryotes: A highly conserved subunit composition highlighted by mining of protein databases. Biochim Biophys Acta 1807: 1390-1397.
CHINNERY PF, TAYLOR RW, DIEKERT K, LILL R, TURNBULL DM, LIGHTOWLERS RN (1999). Peptide nucleic acid delivery to human mitochondria. Gene Ther 6: 1919-1928.
CHOMYN A, MEOLA G, BRESOLIN N, LAI ST, SCARLATO G, ATTARDI G (1991). In vitro genetic transfer of protein synthesis and respiration defects to mitochondrial DNA-less cells with myopathy-patient mitochondria. Mol Cell Biol 11: 2236-2244.
COLLOMBET J-M, WHEELER VC, VOGEL F, COUTELLE C (1997). Introduction of plasmid DNA into isolated mitochondria by electroporation. A novel approach toward gene correction for mitochondrial disorders. J Biol Chem 272: 5342-5347.
DIMAURO S (2007). Mitochondrial DNA medicine. Biosci Rep 27: 5-9.
FLIERL A, JACKSON C, COTTRELL B, MURDOCK D, SEIBEL P, WALLACE DC (2003). Targeted delivery of DNA to the mitochondrial compartment via import sequence-conjugated peptide nucleic acid. Mol Ther 7: 550-557.
FOX TD, SANFORD JC, MCMULLIN TW (1988). Plasmids can stably transform yeast mitochondria lacking endogenous mtDNA. Proc Natl Acad Sci USA 85: 7288-7292.
GEROMEL V, CAO A, BRIANE D, VASSY J, ROTIG A, RUSTIN P, COUDERT R, RIGAUT JP, MUNNICH A, TAILLANDIER E (2001). Mitochondria transfection by oligonucleotides containing a signal peptide and vectorized by cationic liposomes. Antisense Nucleic Acid Drug Dev 11: 175-180.
GRAY MW (1999). Evolution of organellar genomes. Curr Opin Genet Dev 9: 678-687.
GUTIERRES S, SABAR M, LELANDAIS C, CHETRIT P, DIOLEZ P, DEGAND H, BOUTRY M, VEDEL F, DE KOUCHKOVSKY Y, DE PAEPE R (1997). Lack of mitochondrial and nuclear-encoded subunits of complex I and alteration of the respiratory chain in Nicotiana sylvestris mitochondrial deletion mutants. Proc Natl Acad Sci USA 94: 3436-3441.
HANDA H (2003). The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis Thaliana. Nucleic Acids Res 31: 5907-5916.
HAYASHI J-I, OHTA S, KIKUCHI A, TAKEMITSU M, GOTO Y-I, NONAKA I (1991). Introduction of disease-related mitochondrial DNA deletions into HeLa cells lacking mitochondrial DNA results in mitochondrial dysfunction. Proc Natl Acad Sci USA 88: 10614-10618.
HIRAMATSU T, MISUMI O, KUROIWA T, NAKAMURA S (2006). Morphological changes in mitochondrial and chloroplast nucleoids and mitochondria during the Chlamydomonas reinhardtii (Chlorophyceae) cell cycle. J Phycol 42: 1048-1058.
HU Z, FAN Z, ZHAO Z, CHEN J, LI J (2012). Stable expression of antibiotic-resistant gene ble from Streptoalloteichus hindustanus in the mitochondria of Chlamydomonas reinhardtii. PLoS ONE 7: e35542.
HU Z, ZHAO Z, WU Z, FAN Z, CHEN J, WU J, LI J (2011). Successful expression of heterologous egfp gene in the mitochondria of a photosynthetic eukaryote Chlamydomonas reinhardtii. Mitochondrion 11: 716-721.
HUANG Y, SHENOY S, LU B, LIU W, LI C (2012). Kinase signaling dysfunction in Parkinson's disease: a reverse genetic approach in Drosophila. J Neurogenet 26: 158-167.
IRWIN MH, JOHNSON LW, PINKERT CA (1999). Isolation and microinjection of somatic cell-derived mitochondria and germline heteroplasmy in transmitochondrial mice. Transgenic Res 8: 119-123.
JANSKA H, SARRIA R, WOLOSZYNSKA M, ARRIETA-MONTIEL M, MACKENZIE SA (1998). Stoichiometric shifts in the common bean mitochondrial genome leading to male sterility and spontaneous reversion to fertility. Plant Cell 10: 1163-1180.
JOHNSTON SA, ANZIANO PQ, SHARK K, SANFORD JC, BUTOW RA (1988). Mitochondrial transformation in yeast by bombardment with microprojectiles. Science 240: 1538-1541.
KARPOVA OV, NEWTON KJ (1999). A partially assembled complex I in NAD4-deficient mitochondria of maize. Plant J 17: 511-521.
KNOOP V (2004). The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective. Curr Genet 46: 123-139.
KOULINTCHENKO M, TEMPERLEY RJ, MASON PA, DIETRICH A, LIGHTOWLERS RN (2006). Natural competence of mammalian mitochondria allows the molecular investigation of mitochondrial gene expression. Hum Mol Genet 15: 143-154.
LAROSA V, COOSEMANS N, MOTTE P, BONNEFOY N, REMACLE C (2012). Reconstruction of a human mitochondrial complex I mutation in the unicellular green alga Chlamydomonas. Plant J 70: 759-768.
MAUL JE, LILLY JW, CUI L, DEPAMPHILIS CW, MILLER W, HARRIS EH, STERN DB (2002). The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell 14: 2659-2679.
MERCHANT SS, PROCHNIK SE, VALLON O, HARRIS EH, KARPOWICZ SJ, WITMAN GB, TERRY A, SALAMOV A, FRITZ-LAYLIN LK, MARÉCHAL-DROUARD L, MARSHALL WF, QU L-H, NELSON DR, SANDERFOOT AA, SPALDING MH, KAPITONOV VV, REN Q, FERRIS P, LINDQUIST E, SHAPIRO H, LUCAS SM, GRIMWOOD J, SCHMUTZ J, CHLAMYDOMONAS ANNOTATION TEAM, JGI ANNOTATION TEAM, GRIGORIEV IG, ROKHSAR DS, GROSSMAN AR (2007). The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318: 245-251.
PETERSEN KF, BEFROY D, DUFOUR S, DZIURA J, ARIYAN C, ROTHMAN DL, DIPIETRO L, CLINE GW, SHULMAN GI (2003). Mitochondrial dysfunction in the elderly: possible role in insulin resistance. Science 300: 1140-1142.
RAHRMANN EP, WATSON AL, KENG VW, CHOI K, MORIARITY BS, BECKMANN DA, WOLF NK, SARVER A, COLLINS MH, MOERTEL CL, WALLACE MR, GEL B, SERRA E, RATNER N, LARGAESPADA DA (2013). Forward genetic screen for malignant peripheral nerve sheath tumor formation identifies new genes and pathways driving tumorigenesis. Nat Genet: in press (doi: 10.1038/ng:2641).
RANDOLPH-ANDERSON BL, BOYNTON JE, GILLHAM NW, HARRIS EH, JOHNSON AM, DORTHU M-P, MATAGNE RF (1993). Further characterization of the respiratory deficient dum-1 mutation of Chlamydomonas reinhardtii and its use as a recipient for mitochondrial transformation. Mol Gen Genet 236: 235-244.
REMACLE C, CARDOL P, COOSEMANS N, GAISNE M, BONNEFOY N (2006). High-efficiency biolistic transformation of Chlamydomonas mitochondria can be used to insert mutations in complex I genes. Proc Natl Acad Sci USA 103: 4771-4776.
REMACLE C, LAROSA V, SALINAS T, HAMEL P, SUBRAHMANIAN N, BONNEFOY N, KEMPKEN F (2012). Transformation and nucleic acid delivery to mitochondria. In Genomics of Chloroplast and Mitochondria, Advances in Photosynthesis and Respiration, Vol. 35 (Eds R Bock and V Knoop). Springer, Dordrecht, pp. 443-458.
SALINAS T, DUBY F, LAROSA V, COOSEMANS N, BONNEFOY N, MOTTE P, MARÉCHAL-DROUARD L, REMACLE C (2012). Co-evolution of mitochondrial tRNA import and codon usage determines translational efficiency in the green alga Chlamydomonas. PLoS Genet 8: e1002946.
SEIBEL P, TRAPPE J, VILLANI G, KLOPSTOCK T, PAPA S, REICHMANN H (1995). Transfection of mitochondria: strategy towards a gene therapy of mitochondrial DNA diseases. Nucleic Acids Res 23: 10-17.
SLOAN DB, ALVERSON AJ, CHUCKALOVCAK JP, WU M, MCCAULEY DE, PALMER JD, TAYLOR DR (2012). Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. PLoS Biol 10: e1001241.
SMALL ID, ISAAC PG, LEAVER CJ (1987). Stoichiometric differences in DNA molecules containing the atpA gene suggest mechanisms for the generation of mitochondrial genome diversity in maize. EMBO J 6: 865-869.
STEELE DF, BUTLER CA, FOX TD (1996). Expression of a recoded nuclear gene inserted into yeast mitochondrial DNA is limited by mRNA-specific translational activation. Proc Natl Acad Sci USA 93: 5253-5257.
TAKEDA K, TASAI M, IWAMOTO M, ONISHI A, TAGAMI T, NIRASAWA K, HANADA H, PINKERT CA (2005). Microinjection of cytoplasm or mitochondria derived from somatic cells affects parthenogenetic development of murine oocytes. Biol Reprod 72: 1397-4104.
TAYLOR RW, TURNBULL DM (2005). Mitochondrial DNA mutations in human disease. Nat Rev Genet 6: 389-402.
TERASAWA K, ODAHARA M, KABEYA Y, KIKUGAWA T, SEKINE Y, FUJIWARA M, SATO N (2007). The mitochondrial genome of the moss Physcomitrella patens sheds new light on mitochondrial evolution in land plants. Mol Biol Evol 24: 699-709.
TORRES-BACETE J, NAKAMARU-OGISO E, MATSUNO-YAGI A, YAGI T (2007). Characterization of the NuoM (ND4) subunit in Escherichia coli NDH-1. Conserved charged residues essential for energy-coupled activities. J Biol Chem 282: 36914-36922.
TRIFUNOVIC A, WREDENBERG A, FALKENBERG M, SPELBRINK JN, ROVIO AT, BRUDER CE, BOHLOOLY-Y M, GIDLÖF S, OLDFORS A, WIBOM R, TÖRNELL J, JACOBS HT, LARSSON N-G (2004). Premature ageing in mice expressing defective mitochondrial DNA polymerase. Nature 429: 417-423.
UNSELD M, MARIENFELD JR, BRANDT P, BRENNICKE A (1997). The mitochondrial genome of Arabidopsis Thaliana contains 57 genes in 366,924 nucleotides. Nat Genet 15: 57-61.
VAHRENHOLZ C, RIEMEN G, PRATJE E, DUJON B, MICHAELIS G (1993). Mitochondrial DNA of Chlamydomonas reinhardtii: the structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication. Curr Genet 24: 241-247.
VAL R, WYSZKO E, VALENTIN C, SZYMANSKI M, COSSET A, ALIOUA M, DREHER TW, BARCISZEWSKI J, DIETRICH A (2011). Organelle trafficking of chimeric ribozymes and genetic manipulation of mitochondria. Nucleic Acids Res 39: 9262-9274.
VESTWEBER D, SCHATZ G (1989). DNA-protein conjugates can enter mitochondria via the protein import pathway. Nature 338: 170-172.
VINOGRADOVA E, SALINAS T, COGNAT V, REMACLE C, MARÉCHAL-DROUARD L (2009). Steady-state levels of imported tRNAs in Chlamydomonas mitochondria are correlated with both cytosolic and mitochondrial codon usages. Nucleic Acids Res 37: 1521-1518.
WARD BL, ANDERSON RS, BENDICH AJ (1981). The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae). Cell 25: 793-803.
WOLOSZYNSKA M (2010). Heteroplasmy and stoichiometric complexity of plant mitochondrial genomes--though this be madness, yet there's method in't. J Exp Bot 61: 657-671.
YAMASKI T, KUROKAWA S, WATANABE KI, IKUTA K, OHAMA T (2005). Shared molecular characteristics of successfully transformed mitochondrial genomes in Chlamydomonas reinhardtii. Plant Mol Biol 58: 515-527.
YOON YG, KOOB MD (2005) Transformation of isolated mammalian mitochondria by bacterial conjugation. Nucleic Acids Res 33: e139.
YU H, KOILKONDA RD, CHOU T-H, PORCIATTI V, OZDEMIR SS, CHIODO V, BOYE SL, BOYE SE, HAUSWIRTH WW, LEWIN AS, GUY J (2012a). Gene delivery to mitochondria by targeting modified adenoassociated virus suppresses Leber's hereditary optic neuropathy in a mouse model. Proc Natl Acad Sci USA 109: E1238-E1247.
YU H, OZDEMIR SS, KOILKONDA RD, CHOU T-H, PORCIATTI V, CHIODO V, BOYE SL, HAUSWIRTH WW, LEWIN AS, GUY J (2012b). Mutant NADH dehydrogenase subunit 4 gene delivery to mitochondria by targeting sequence-modified adeno-associated virus induces visual loss and optic atrophy in mice. Mol Vis 18: 1668-1683.