Biocontrol proteomics: Development of an in situ interaction model and a protein extraction method for a proteomic study of the inhibiting mechanisms of Pichia anomala against Botrytis cinerea.
Biocontrol proteomics: Development of an in situ interaction model and a protein extraction method for a proteomic study of the inhibiting mechanisms of Pichia anomala against Botrytis cinerea.
Boucherie H (1985) Protein synthesis during transition and stationary phases under glucose limitation in Saccharomyces cerevisiae. J Bacteriol 161: 385-392.
Bradford MM (1976) A rapid and sensitive method for the quantitation of migrogram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
Brandts JF, Oliveira RJ, Westort C (1970) Thermodynamics of protein denaturation. Effect of pressure on the denaturation on ribonuclease A. Biochemistry 9: 1038-1047.
Carpentier SC, Witters E, Laukens K, Deckers P, Swennen R, Panis B (2005) Preparation of protein extracts from recalcitrant plant tissues: an evaluation of different methods for two-dimensional gel electrophoresis analysis. Proteomics 5: 2497-2507.
Delaplace P, van der Wall F, Dierick J-F, Cordewener JHG, Fauconnier M-LP, du Jardin P, America AHP (2006) Potato tuber proteomics: comparison of two complementary extraction methods designed for 2-DE of acidic proteins. Proteomics 6: 6494-6497.
des Francs CC, Thiellement H, De Vienne D (1985) Analysis of leaf proteins by two-dimensional gel electrophoresis: protease action as exemplified by ribulose bisphosphate carboxylase/oxygenase degradation and procedure to avoid proteolysis during extraction. Plant Physiol 78: 178-182.
Fernández-Arenas E, Cabezón V, Bermejo C, Arroyo J, Nombela C, Diez-Orejas R, Gil C (2007) Integrated proteomics and genomics strategies bring new insight into Candida albicans response upon macrophage interaction. Mol Cell Proteomics 6: 460-478.
Friel D, Pessoa NMG, Vandenbol M, Jijakli MH (2007) Separate and combined disruptions of two exo-β-1, 3-glucanase genes decrease the efficiency of Pichia anomala (strain K) biocontrol against Botrytis cinerea on apple. Mol Plant Microbe Interact 20: 371-379.
Görg A, Weiss W, Dunn MJ (2004) Current two-dimensional electrophoresis technology for proteomics. Proteomics 4: 3665-3685.
Gori K, Hébraud M, Chambon C, Mortensen HD, Arneborg N, Jespersen L (2007) Proteomic changes in Debaryomyces hansenii upon exposure to NaCl stress. FEMS Yeast Res 7: 293-303.
Grevesse C, Lepoivre P, Jijakli MH (2003) Characterization of the exoglucanase-encoding gene PaEXG2 and study of its role in the biocontrol activity of Pichia anomala strain K. Phytopathology 93: 1145-1152.
Hansen R, Pearson S, Brosnan J, Meaden P, Jamieson D (2006) Proteomic analysis of a distilling strain of Saccharomyces cerevisiae during industrial grain fermentation. Appl Microbiol Biotechnol 72: 116-125.
Harder A, Wildgruber R, Nawrocki A, Fey SJ, Larsen PM, Görg A (1999) Comparison of yeast cell protein solubilization procedures for two-dimensional electrophoresis. Electrophoresis 20: 826-829.
Harrison PA, Black CC (1982) Two-dimensional electrophoretic mapping of proteins bundle sheath and mesophyll cells of the C4 grass Digitaria sanguinalis (L.) Scop (Cabgrass). Plant Physiol 70: 1359-1366.
Hu Y, Wang G, Chen GYJ, Fu X, Yao SQ (2003) Proteome analysis of Saccharomyces cerevisiae under metal stress by two-dimensional differential gel electrophoresis. Electrophoresis 24: 1458-1470.
Hwang K-H, Carapito C, Böhmer S, Leize E, van Dorsselaer A, Bernhardt R (2006) Proteome analysis of Schizosaccharomyces pombe by two-dimensional gel electrophoresis and mass spectrometry. Proteomics 6: 4115-4129.
Jijakli HM, Lepoivre P (1993) Biological control of postharvest Botrytis cinerea and Penicillium on apples. IOBC/WRPS Bulletin: Biol control foliar Post-harvest Dis 16: 106-110.
Jijakli MH, Lepoivre P (1998) Characterization of an exo-β-1, 3-glucanase produced by Pichia anomala strain K, antagonist of Botrytis cinerea on apples. Phytopathology 88: 335-343.
Jijakli MH, Lepoivre P, Tossut P, Thonart P (1993) Biological control of Botrytis cinerea and Penicillium on postharvest apples by two antagonistic yeasts. Med Fac Landbouwwet Univ Gent 58: 1349-1358.
Jijakli MH, Lepoivre P, Grevesse C (1999) Yeast species for biocontrol of apples postharvest diseases: an encouraging case of study for practical use. In: Mukerji KG, Chamola BP, Upadhay RK (eds) Biotechnological approaches in biocontrol of plant pathogens. Academic/Plenum, New York, USA, pp 31-49.
Kusch H, Engelmann S, Albrecht D, Morschhäuser J, Hecker M (2007) Proteomic analysis of the oxidative stress response in Candida albicans 13. Proteomics 7: 686-697.
Massart S (2005) Identification par la cDNA-AFLP de gènes potentiellement impliqués dans les propriétés de biocontrôle de la levure Pichia anomala (Hansen) Kurtzman (souche Kh5), un agent antagoniste de Botrytis cinerea Pers. sur pomme en conservation. Académie Universitaire Wallonie-Europe, Fusagx, Gembloux, Belgium, p 187.
Massart S, Jijakli MH (2006) Identification of differentially expressed genes by cDNA-amplified fragment length polymorphism in the biocontrol agent Pichia anomala (strain Kh5). Phytopathology 96: 80-86.
Matis M, Žakelj-Mavrič M, Peter-Katalinić J (2005) Global analysis of the Hortaea werneckii proteome: studying steroid response in yeast. J Proteome Res 4: 2043-2051.
McKee JR, Christman CL, O'Brien WD, Wang SY (1977) Effects of ultrasound on nucleic acid bases. Biochemistry 16: 4651-4654.
Nandakumar MP, Shen J, Raman B, Marten MR (2002) Solubilization of trichloroacetic acid (TCA) precipitated microbial proteins via NaOH for two-dimensional electrophoresis. J Proteome Res 2: 89-93.
Nobel JGD, Klis FM, Munnik T, Priem J, Ende HVD (1990a) An assay of relative cell wall porosity in Saccharomyces cerevisiae, Kluyveromyces lactis and Schizosaccharomyces pombe. Yeast 6: 483-490.
Nobel JGD, Klis FM, Priem J, Munnik T, Ende HVD (1990b) The glucanase-soluble mannoproteins limit cell wall porosity in Saccharomyces cerevisiae. Yeast 6: 491-499.
O'Farrell PH (1975) High resolution two-dimensional electrophoresis of proteins. J Biol Chem 250: 4007-4021.
Orsborn KI, Shubitz LF, Peng T, Kellner EM, Orbach MJ, Haynes PA, Galgiani JN (2006) Protein expression profiling of Coccidioides posadasii by two-dimensional differential in-gel electrophoresis and evaluation of a newly recognized peroxisomal matrix protein as a recombinant vaccine candidate. Infect Immun 74: 1865-1872.
Privalov PL, Makhatadze GI (1990) Heat capacity of proteins: II. Partial molar heat capacity of the unfolded polypeptide chain of proteins: protein unfolding effects. J Mol Biol 213: 385-391.
Saravanan RS, Rose JKC (2004) A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 4: 2522-2532.
Shaw MM, Riederer BM (2003) Sample preparation for two-dimensional gel electrophoresis. Proteomics 3: 1408-1417.
Sholberg PL, Haag PD (1996) Incidence of postharvest pathogens of stored apples in British Columbia. Can J Plant Pathol 18: 81-85.
Sinclair J, Weeks M, Butt A, Worthington JL, Akpan A, Jones N, Waterfield M, Allanand D, Timms JF (2006) Proteomic response of Schizosaccharomyces pombe to static and oscillating extremely low-frequency electromagnetic fields. Proteomics 6: 4755-4764.
Suslick KS, Price GJ (1999) Application of ultrasound to materials chemistry. Annu Rev Mater Sci 29: 295-326.
Teixeira MC, Santos PM, Fernandes AR, Sá-Correia I (2005) A proteome analysis of the yeast response to the herbicide 2, 4-dichlorophenoxyacetic acid. Proteomics 5: 1889-1901.
Tsukamoto I, Constantinoiu E, Furuta M, Nishimura R, Maeda Y (2004) Inactivation effect of sonication and chlorination on Saccharomyces cerevisiae calorimetric analysis. Ultrason Sonochem 11: 167-172.
Vincent D, Wheatley MD, Cramer GR (2006) Optimization of protein extraction and solubilization for mature grape berry clusters. Electrophoresis 27: 1853-1865.
