Brubaker C.L., Brown A.H.D., Stewart J.M., Kilby M.J., Grace J.P. (1999) Production of fertile hybrid germplasm with diploid Australian Gossypium species for cotton improvement. Euphytica 108:199-213.
Brubaker C.L., Paterson A.H., Wendel J.F. (1999) Comparative genetic mapping of allotetraploid cotton and its diploid progenitors. Genome 42:184-203.
Comai L. (2000) Genetic and epigenetic interactions in allopolyploid plants. Plant Mol. Biol. 43:387-399.
Comai L., Tyagi A.P., Winter K., Holmes-Davis R., Reynolds S.H., Stevens Y., Byers B. (2000) Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids. Plant Cell 12:1551-1567.
Cronn R.C., Zhao X., Paterson A.H., Wendel J.F. (1996) Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons. J. Mol. Evol. 42:685-705.
Cronn R., Small R.L., Wendel J.F. (1999) Duplicated genes evolve independently following polyploid formation in cotton. Proc. Natl. Acad. Sci. U.S.A. 96:14406-14411.
Endrizzi J.E., Turcotte E.L., Kohel R.J. (1985) Genetics, cytogenetics, and evolution of Gossypium. Adv. Genet. 23:271-375.
Feldman M., Liu B., Segal G., Abbo S., Levy A.A., Vega J.M. (1997) Rapid elimination of low-copy DNA sequences in polyploid wheat: A possible mechanism for differentiation of homoeologous chromosomes. Genetics 147:1381-1387.
Finnegan E.J., Genger R.K., Peacock W.J., Dennis E.S. (1998) DNA methylation in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49:223-247.
Fryxell P.A. The natural history of the cotton tribe, Texas A&M University Press, College Station, Tex.; 1979.
Fryxell P.A. (1992) A revised taxonomic interpretation of Gossypium L. (Malvaceae). Rheedea 2:108-165.
Hanson R.E., Zhao X.-P., Islam-Faridi M.N., Paterson A.H., Zwick M.S., Crane C.F., McKnight T.D., Stelly D.M., Price H.J. (1998) Evolution of interspersed repetitive elements in Gossypium (Malvaceae). Am. J. Bot. 85:1364-1368.
Jiang C., Wright R., El-Zik K., Paterson A.H. (1998) Polyploid formation created unique avenues for response to selection in Gossypium (cotton). Proc. Natl. Acad. Sci. U.S.A. 95:4419-4424.
Liu B., Wendel J.F. (2000) Retroelement activation followed by rapid repression in interspecific hybrid plants. Genome 43:874-880.
Liu B., Vega J.M., Feldman M. (1998) Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences. Genome 41:535-542.
Liu B., Vega J.M., Segal G., Abbo S., Rodova M., Feldman M. (1998) Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. I. Changes in low-copy non-coding DNA sequences. Genome 41:272-277.
Maréchal R. (1983) Une collection d'hybrides interspécifiques du genre Gossypium. Coton Fibres Trop. 38:240-246.
Masterson J. (1994) Stomatal size in fossil plants: Evidence for polyploidy in majority of angiosperms. Science (Washington, D.C.) 264:421-424.
Matzke M.A., Matzke A.J.M. (1998) Gene silencing in plants: Relevance for genome evolution and the acquisition of genomic methylation patterns. Epigenetics: Novartis Foundation Symposium , Edited by D.J. Chadwick and A.P. Wolffe. Wiley, Chichester, U.K.; 214:168-186.
Matzke M.A., Scheid O.M., Matzke A.J.M. (1999) Rapid structural and epigenetic changes in polyploid and aneuploid genomes. Bioessays 21:761-767.
O'Neill R.J.W., O'Neill M.J., Graves J.A.M. (1998) Undermethylation associated with retroelement activation chromosome remodelling in an interspecific mammalian hybrid. Nature (London) 393:68-72.
O'Neill R.J.W., O'Neill M.J., Graves J.A.M. (1999) Reply to Reomer et al.: Global methylation in eutherian hybrids. Nature (London) 401:132.
Percival A.E., Stewart J.M., Wendel J.F. (1999) Taxonomy and germplasm resources., Cotton: origin, history, technology and production. Editor by C.W. Smith and J.T. Cothren. John Wiley, New York; 33-63.
Reyna-Lopez G.E., Simpson J., Ruiz-Herrera J. (1997) Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. Mol. Gen. Genet. 253:703-710.
Robertson K.D., Wolffe A.P. (2000) DNA methylation in health and disease. Nat. Rev. Genet. 1:11-19.
Schranz M.E., Osborn T.C. (2000) Novel flowering time variation in the resynthesized polyploid Brassica napus. J. Hered. 91:242-246.
Schwarz G., Herz M., Huang X.Q., Michalek W., Jahoor A., Wenzel G., Mohler V. (2000) Application of fluorescence-based semi-automated AFLP analysis in barley and wheat. Theor. Appl. Genet. 100:545-551.
Seelanan T., Schnabel A., Wendel J.F. (1997) Congruence and consensus in the cotton tribe. Syst. Bot. 22:259-290.
Small R.L., Wendel J.F. (1999) The mitochondrial genome of allotetraploid cotton (Gossypium L.). J. Hered. 90:251-253.
Small R.L., Wendel J.F. (2000) Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium). Genetics 155:1913-1926.
Soltis D.E., Soltis P.S. (1995) The dynamic nature of polyploid genomes. Proc. Natl. Acad. Sci. U.S.A. 92:8089-8091.
Soltis D.E., Soltis P.S. (1999) Polyploidy: Origins of species and genome evolution. Trends Ecol. Evol. 9:348-352.
Song K., Lu P., Tang K., Osborn T.C. (1995) Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc. Natl. Acad. Sci. U.S.A. 92:7719-7723.
Stewart J.M. (1995) Potential for crop improvement with exotic germplasm and genetic engineering. Challenging the Future: Proceedings of the World Cotton Research Conference , Edited by G.A. Constable and N.W. Forrester. CSIRO, Melbourne, Australia; 313-327.
VanderWiel P.S., Voytas D.F., Wendel J.F. (1993) Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.). J. Mol. Evol. 36:429-447.
Volkov R.A., Borisjuk N.V., Panchuk I.I., Schweizer D., Hemleben V. (1999) Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum. Mol. Biol. Evol. 16:311-320.
Vos P., Hogers R., Bleeker M., Reijans M., Van de Lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M., Zabeau M. (1995) AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 23:4407-4414.
Vuylsteke R., Mank R., Antonise R., Bastiaans E., Senior M.L., Stuber C.W., Melchinger A.E., Lubberstedt T., Xia X.C., Stam P., Zabeau M., Küiper M. (1999) Two high-density AFLP linkage maps of Zea mays L.: Analysis of distribution of AFLP markers. Theor. Appl. Genet. 99:921-935.
Wendel J.F. (1989) New World tetraploid cottons contain Old World cytoplasm. Proc. Natl. Acad. Sci. U.S.A. 86:4132-4136.
Wendel J.F. (1995) Cotton., Evolution of crop plants. Edited by N. Simmonds and J. Smartt. Longman, London; 358-366.
Wendel J.F., Albert V.A. (1992) Phylogenetics of the cotton genus (Gossypium L.): Character-state weighted parsimony analysis of chloroplast DNA restriction site data and its systematic and biogeographic implications. Syst. Bot. 17:115-143.
Wendel J.F., Schnabel A., Seelanan T. (1995) Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc. Natl. Acad. Sci. U.S.A. 92:280-284.
Wendel J.F., Small R.L., Cronn R.C., Brubaker C.L. (1999) Genes, jeans, and genomes: Reconstructing the history of cotton. Plant Evolution in Man-made Habitats: Proceedings of the 7th International Symposium of the International Organization of Plant Biosystematists , Edited by L.W.D. van Raamsdonk and J.C.M. den Nijs. Hugo de Vries Laboratory, Amsterdam; 133-161.
Xiong L.Z., Xu C.G., Saghai-Maroof M.A., Zhang Q. (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol. Gen. Genet. 261:439-446.
Yoder J.A., Walsh C.P., Bestor T.H. (1997) Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13:335-340.
Young W.P., Schupp J.M., Keim P. (1999) DNA methylation and AFLP marker distribution in the soybean genome. Theor. Appl. Genet. 99:785-790.
Zhao X.-P., Si Y., Hanson R.E., Crane C.F., Price H.J., Stelly D.M., Wendel J.F., Paterson A.H. (1998) Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton. Genome Res. 8:479-492.
