Calus M.P.L., Meuwissen T.H.E., de Roos A.P.W., Veerkamp R.F. Accuracy of genomic selection using different methods to define haplotypes. Genetics 2008, 178:553-561.
Druet T., Georges M. A hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping. Genetics 2010, 184:789-798.
Druet T., Schrooten C., de Roos A.P.W. Imputation of genotypes from different single nucleotide polymorphism panels in dairy cattle. J. Dairy Sci. 2010, 93:5443-5454.
Grisart B., Coppieters W., Farnir F., Karim L., Ford C., Berzi P., Cambisano N., Mni M., Reid S., Simon P., Spelman R., Georges M., Snell R. Positional candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res. 2002, 12:222-231.
Habier D., Fernando R.L., Dekkers J.C.M. The impact of genetic relationship information on genome-assisted breeding values. Genetics 2007, 177:2389-2397.
Hayes B.J., Chamberlain A.J., McPartlan H., Macleod I., Sethuraman L., Goddard M.E. Accuracy of marker assisted selection with single markers and marker haplotypes in cattle. Genet. Res. 2007, 89:215-220.
Meuwissen T.H.E., Goddard M.E. Mapping multiple QTL using linkage disequilibrium and linkage analysis information and multitrait data. Genet. Sel. Evol. 2004, 36:261-279.
Meuwissen T.H.E., Hayes B.J., Goddard M.E. Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001, 157:1819-1829.
Scheet P., Stephens M. A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet. 2006, 78:629-644.
Su S.Y., Balding D.J., Coin L.J.M. Disease association tests by inferring ancestral haplotypes using a hidden Markov model. Bioinformatics 2008, 24:972-978.
VanRaden P.M. Efficient methods to compute genomic predictions. J. Dairy Sci. 2008, 91:4414-4423.
VanRaden P.M., Van Tassel C.P., Wiggans G.R., Sonstegard T.S., Schnabel R.D., Taylor J.F., Schenkel F.S. Invited review: Reliability of genomic predictions for North American Holstein bulls. J. Dairy Sci. 2009, 92:16-24.
