![]() ![]() | Syed-Shan-e-Ali, Z., Mehta, D., Cornet, L., & Vanderschuren, H. (30 January 2020). Full-length sequencing of extrachromosomal circular DNA using CIDER-Seq. Paper presented at Circular DNA in normal development and disease, Berlin, Germany. |
![]() ![]() | Syed-Shan-e-Ali, Z., Vasudevan, K., Lentz, E. M., & Vanderschuren, H. (2020). Virus-Induced Gene Silencing (VIGS) in Cassava Using Geminivirus Agroclones. Methods in molecular biology (Clifton, N.J.), 2172, 51-64. doi:10.1007/978-1-0716-0751-0_5 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Mahas, A., Vanderschuren, H., & Mahfouz, M. M. (2020). Engineering crops of the future: CRISPR approaches to develop climate-resilient and disease-resistant plants. Genome Biology, 21 (1), 289. doi:10.1186/s13059-020-02204-y ![]() |
![]() ![]() | Mehta, D., Cornet, L., Hirsch-Hoffmann, M., Syed-Shan-e-Ali, Z., & Vanderschuren, H. (2020). Full-length sequencing of circular DNA viruses and extrachromosomal circular DNA using CIDER-Seq. Nature Protocols, 15 (5), 1673-1689. doi:10.1038/s41596-020-0301-0 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Cornet, L., Mehta, D., & Vanderschuren, H. (November 2019). CIDER-Seq: An efficient tool to study plant-geminivirus recombinant eccDNAs. Paper presented at 9th International Geminivirus Symposium and 7th ssDNA Comparative Virology Workshop (IGS 2019), Davis, United States. |
![]() ![]() | Mehta, D., Sturchler, A., Anjanappa, R. B., Syed-Shan-e-Ali, Z., Hirsch-Hoffmann, M., Gruissem, W., & Vanderschuren, H. (25 April 2019). Linking CRISPR-Cas9 interference in cassava to the evolution of editing-resistant geminiviruses. Genome Biology, 20 (1), 80. doi:10.1186/s13059-019-1678-3 ![]() |
![]() ![]() | Mehta, D., Hirsch-Hoffmann, M., Were, M., Patrignani, A., Syed-Shan-e-Ali, Z., Were, H., Gruissem, W., & Vanderschuren, H. (25 January 2019). A new full-length circular DNA sequencing method for viral-sized genomes reveals that RNAi transgenic plants provoke a shift in geminivirus populations in the field. Nucleic Acids Research, 47 (2), 914. doi:10.1093/nar/gky914 ![]() |
![]() ![]() | Wasalathanthri, N. D., Syed-Shan-e-Ali, Z., Mahrt, E., Srivastava, S., Yu, K.-H., Johansson, K. S. L., Li, F., Jimenez, M. F. T., Lo, C., Allareddy, V., Romero-Molina, C., Mosegaard, S., Heaton, S. M., Park, J. J.-Y., Bacon, C. D., Yu, S., Polat, E. O., Wasalathanthri, D., Wang, W., & Agarwal, D. (2019). Challenging transitions [letter to the editor]. Science, 363 (6422), 24-26. doi:10.1126/science.aaw2641 ![]() |
![]() ![]() | Hameed, A., Syed-Shan-e-Ali, Z., Sattar, M. N., Iqbal, Z., & Tahir, M. N. (2019). CRISPR technology to combat plant RNA viruses: A theoretical model for Potato virus Y (PVY)resistance. Microbial Pathogenesis, 133. doi:10.1016/j.micpath.2019.103551 ![]() |
![]() ![]() | Khan, M. Z., Syed-Shan-e-Ali, Z., Amin, I., & Mansoor, S. (2019). A CRISPR Way for Fast-Forward Crop Domestication. Trends in Plant Science, 24 (4), 293-296. doi:10.1016/j.tplants.2019.01.011 ![]() |
![]() ![]() | Naqvi, R. Z., Syed-Shan-e-Ali, Z., Mukhtar, M. S., Amin, I., Mishra, B., Strickler, S., Mueller, L. A., Asif, M., & Mansoor, S. (2019). Transcriptomic analysis of cultivated cotton Gossypium hirsutum provides insights into host responses upon whitefly-mediated transmission of cotton leaf curl disease. PLoS ONE, 14 (2), 0210011. doi:10.1371/journal.pone.0210011 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Naqvi, R. Z., Asif, M., Strickler, S., Shakir, S., Shafiq, M., Khan, A. M., Amin, I., Mishra, B., Mukhtar, M. S., Scheffler, B. E., Scheffler, J. A., Mueller, L. A., & Mansoor, S. (2019). Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton (Gossypium hirsutum). Plant Biotechnology Journal. doi:10.1111/pbi.13236 ![]() |
Syed-Shan-e-Ali, Z., Cornet, L., Mehta, D., Patrignanic, A., & Vanderschuren, H. (28 October 2018). A Novel Method of Capturing and Sequencing Rolling Circle-Replicating Helitron Transposons. Paper presented at International plant epi / genetics symposium, Angers, France. |
Syed-Shan-e-Ali, Z., Cornet, L., Comadira, G., Bawin, T., & Vanderschuren, H. (16 October 2018). Combining BAC and PacBio sequencing to resolve cassava mosaic disease resistance locus CMD2. Paper presented at SASBi/SAGS congress 2018, Clarens, South Africa. |
Syed-Shan-e-Ali, Z. (2018). Translating Geminivirus Research From Model Arabidopsis-Cabbage Leaf Curl Virus Pathosystem To Fiels Crop Cotton (Gossypium Hirsutum). Poster session presented at 29th International Conference on Arabidopsis Research, Turku, Finland. |
![]() ![]() | Syed-Shan-e-Ali, Z. (2018). The Past, Present and Future of Open Access. Basel, Switzerland: MDPI. |
![]() ![]() | Syed-Shan-e-Ali, Z., Mukhtar, M. S., & Mansoor, S. (2018). Genome Editing: Targeting Susceptibility Genes for Plant Disease Resistance. Trends in Biotechnology, 36 (9), 898-906. doi:10.1016/j.tibtech.2018.04.005 ![]() |
![]() ![]() | Brotherton, C. A., Naz, S., Syed-Shan-e-Ali, Z., Dennis, A. F., Hamalainen, A., Strielkowski, W., Lyu, M.-J. A., Wenderott, J. K., Espinosa-Diez, C., Isaacson, K., Li, Y., Hassan, E., Hoyer, J. S., & Cusimano, J. M. (2018). NextGen VOICES: A postdoc's purpose [letter to the editor]. Science, 360 (6384), 26-27. doi:10.1126/science.aat6008 ![]() |
![]() ![]() | Segal, L., Agarwal, D., Isaacson, K. J., Oehmke, T. B., Kumar, B., Chen, J. S., Cusimano, J. M., Negi, S., Tiper, I., Bakermans, A. J., Jensen, M. M., Sanganyado, E., Syed-Shan-e-Ali, Z., Romero-Molina, C., Martinez, S. E., Anderson, S. M., Santos, G. M., De Lella Ezcurra, A. L., Farragher, J., ... Kerman, B. E. (2018). NextGen Voices: Quality mentoring [letter to the editor]. Science, 362 (6410), 22-24. doi:10.1126/science.aav5914 ![]() |
![]() ![]() | Pietrzak, B., Ward, A., Cheung, M. K., Schwendimann, B. A., Mollaoglu, G., Duong, M. T., Ulltveit-Moe, N., Allareddy, V., Dutton-Regester, K., Zhang, J., Scult, M. A., Naz, S., Singh, P. C., Yan, H. Y., Isaacson, K., Dennis, A. F., Al-Humaidan, E. I., Beardsley, F. R., Lo, C., ... Konstantinides, N. (2018). Education for the future [letter to the editor]. Science, 360 (6396), 1409-1412. doi:10.1126/science.aau3877 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Mansoor, S., & Paterson, A. (2018). The Rise of Cotton Genomics. Trends in Plant Science, 23 (11), 953-955. doi:10.1016/j.tplants.2018.08.009 ![]() |
![]() ![]() | Hameed, A.* , Syed-Shan-e-Ali, Z.* , Shakir, S., & Mansoor, S. (2018). Applications of New Breeding Technologies for Potato Improvement. Frontiers in Plant Science, 9, 925. doi:10.3389/fpls.2018.00925 ![]() * These authors have contributed equally to this work. |
Syed-Shan-e-Ali, Z. (21 May 2017). CRISPR/Cas9-Mediated Antiviral Immunity Against Geminiviruses. Poster session presented at 30th International Conference on Antiviral Research (ICAR), Atlanta, United States. |
![]() ![]() | Syed-Shan-e-Ali, Z., & Mansoor, S. (2017). Viral Vectors for Plant Genome Engineering. Frontiers in Plant Science, 8, 539. doi:10.3389/fpls.2017.00539 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Martin, D. P., Amin, I., Farooq, M., & Mansoor, S. (2017). Tomato leaf curl New Delhi virus: a widespread bipartite begomovirus in the territory of monopartite begomoviruses. Molecular Plant Pathology, 18 (7), 901-911. doi:10.1111/mpp.12481 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Briddon, R. W., & Mansoor, S. (2017). Engineering Dual Begomovirus-Bemisia tabaci Resistance in Plants. Trends in Plant Science, 22 (1), 6-8. doi:10.1016/j.tplants.2016.11.005 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Tashkandi, M., & Mahfouz, M. M. (2017). Engineering Molecular Immunity Against Plant Viruses. Progress in Molecular Biology and Translational Science, 149, 167-186. doi:10.1016/bs.pmbts.2017.03.009 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Mahfouz, M. M., & Mansoor, S. (2017). CRISPR-Cpf1: A New Tool for Plant Genome Editing. Trends in Plant Science, 22 (7), 550-553. doi:10.1016/j.tplants.2017.05.001 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Shakir, S., Malik, H. J., Farooq, M., Amin, I., & Mansoor, S. (2017). First report of Tomato leaf curl New Delhi virus on Calotropis procera, a weed as potential reservoir begomovirus host in Pakistan. Plant Disease, 101 (6), 1071. doi:10.1094/pdis-10-16-1539-pdn ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Shakir, S., Farooq, M., Amin, I., & Mansoor, S. (2017). First Report of a Novel Strain of Tomato yellow leaf curl virus Causing Yellow Leaf Curl Disease on Cluster Bean in Pakistan. Plant Disease, 101 (6), 1071. doi:10.1094/pdis-12-16-1859-pdn ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Shakir, S., Farooq, M., Amin, I., & Mansoor, S. (2017). First Report of Alternanthera yellow vein virus From Eclipta prostrata in Pakistan. Plant Disease, 101 (1), 266. doi:10.1094/pdis-08-16-1164-pdn ![]() |
![]() ![]() | Zubair, M.* , Syed-Shan-e-Ali, Z.* , Shakir, S., Amin, I., & Mansoor, S. (2017). An Insight into Cotton Leaf Curl Multan Betasatellite, the Most Important Component of Cotton Leaf Curl Disease Complex. Viruses, 9 (10). doi:10.3390/v9100280 ![]() * These authors have contributed equally to this work. |
![]() ![]() | Zubair, M.* , Syed-Shan-e-Ali, Z.* , Shakir, S., Farooq, M., Amin, I., Scheffler, J. A., Scheffler, B. E., & Mansoor, S. (2017). Multiple begomoviruses found associated with cotton leaf curl disease in Pakistan in early 1990 are back in cultivated cotton. Scientific Reports, 7 (1), 680. doi:10.1038/s41598-017-00727-2 ![]() * These authors have contributed equally to this work. |
![]() ![]() | Naqvi, R. Z.* , Syed-Shan-e-Ali, Z.* , Akhtar, K. P., Strickler, S., Woldemariam, M., Mishra, B., Mukhtar, M. S., Scheffler, B. E., Scheffler, J. A., Jander, G., Mueller, L. A., Asif, M., & Mansoor, S. (2017). Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum. Scientific Reports, 7 (1), 15880. doi:10.1038/s41598-017-15963-9 ![]() * These authors have contributed equally to this work. |
Syed-Shan-e-Ali, Z. (30 March 2016). Frequent occurrence of Tomato leaf curl New Delhi virus in cotton leaf curl disease affected cotton in Pakistan. Paper presented at 1st International Conference on Advancements in Biotechnology, Faisalabad, Pakistan. |
![]() ![]() | Syed-Shan-e-Ali, Z., Ijaz, S., Khan, A. I., & Rana, I. A. (2016). Development of source independent micropropagation system in Dalbergia sissoo Roxb, as a basis for germplasm conservation and disease free plants production. Molecular Plant Breeding, 7 (15), 1-12. doi:10.5376/mpb.2016.07.0015 ![]() |
![]() ![]() | Ali, Z., Ali, S., Tashkandi, M., Syed-Shan-e-Ali, Z., & Mahfouz, M. M. (2016). CRISPR/Cas9-mediated Immunity to Geminiviruses. VirusDisease. doi:10.1007/s13337-016-0351-7 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Mansoor, S., Ali, Z., Tashkandi, M., & Mahfouz, M. M. (2016). Engineering Plants for Geminivirus Resistance with CRISPR/Cas9 System. Trends in Plant Science, 21 (4), 279-281. doi:10.1016/j.tplants.2016.01.023 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Tashkandi, M., Mansoor, S., & Mahfouz, M. M. (2016). Engineering Plant Immunity: Using CRISPR/Cas9 to Generate Virus Resistance. Frontiers in Plant Science, 7, 1673. doi:10.3389/fpls.2016.01673 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Amin, I., Iqbal, Z., Akhtar, K. P., Scheffler, B. E., & Mansoor, S. (2016). Sesbania bispinosa, a new host of a begomovirus-betasatellite complex in Pakistan. Canadian Journal of Plant Pathology, 38 (1), 107-111. doi:10.1080/07060661.2015.1128980 ![]() |
![]() ![]() | Syed-Shan-e-Ali, Z., Shafiq, M., Amin, I., Scheffler, B. E., Scheffler, J. A., Briddon, R. W., & Mansoor, S. (2016). Frequent Occurrence of Tomato Leaf Curl New Delhi Virus in Cotton Leaf Curl Disease Affected Cotton in Pakistan. PLoS ONE, 11 (5), 0155520. doi:10.1371/journal.pone.0155520 ![]() |
![]() ![]() | Ali, Z., Ali, S., Tashkandi, M., Syed-Shan-e-Ali, Z., & Mahfouz, M. M. (2016). CRISPR/Cas9-Mediated Immunity to Geminiviruses: Differential Interference and Evasion. Scientific Reports, 6, 26912. doi:10.1038/srep26912 ![]() |
Syed-Shan-e-Ali, Z. (August 2015). Evolution of virus complex associated with cotton leaf curl disease. Paper presented at United States Department of Agriculture (USDA) and International Center for Agricultural Research in the Dry Area (ICARDA) annual meeting, Islamabad, Pakistan. |
![]() ![]() | Syed-Shan-e-Ali, Z., Iqbal, Z., Amin, I., & Mansoor, S. (2015). First report of Tomato leaf curl Gujarat virus, a bipartite begomovirus on cotton showing leaf curl symptoms in Pakistan. Plant Disease, 99 (11), 1655. doi:10.1094/pdis-02-15-0195-pdn ![]() |
Syed-Shan-e-Ali, Z., Mansoor, S., Amin, I., & Briddon, R. W. (28 March 2014). Occurrence of a bipartite begomovirus infecting cotton (Gossypium hirsutum L.). Paper presented at 1st National students conference on biological sciences, Faisalabad, Pakistan. |