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Zaïdi Syed Shan-e-Ali

Département GxABT > Plant Sciences

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Main Referenced Co-authors
Mansoor, Shahid (21)
Amin, Imran (12)
Vanderschuren, Hervé  (9)
Shakir, Sara  (7)
Mahfouz, Magdy M. (6)
Main Referenced Keywords
CRISPR/Cas9 (4); Cassava (3); CRISPR (3); Genetic Engineering/methods (3); genome engineering (3);
Main Referenced Disciplines
Biotechnology (33)
Agriculture & agronomy (26)
Genetics & genetic processes (22)
Biochemistry, biophysics & molecular biology (19)
Education & instruction (5)

Publications (total 45)

The most downloaded
120 downloads
Hameed, A.* , Syed-Shan-e-Ali, Z.* , Shakir, S., & Mansoor, S. (2018). Applications of New Breeding Technologies for Potato Improvement. Frontiers in Plant Science, 9, 925. doi:10.3389/fpls.2018.00925 https://hdl.handle.net/2268/231846

The most cited

225 citations (Scopus®)

Ali, Z., Ali, S., Tashkandi, M., Syed-Shan-e-Ali, Z., & Mahfouz, M. M. (2016). CRISPR/Cas9-Mediated Immunity to Geminiviruses: Differential Interference and Evasion. Scientific Reports, 6, 26912. doi:10.1038/srep26912 https://hdl.handle.net/2268/231873

Syed-Shan-e-Ali, Z., Mehta, D., Cornet, L., & Vanderschuren, H. (30 January 2020). Full-length sequencing of extrachromosomal circular DNA using CIDER-Seq [Paper presentation]. Circular DNA in normal development and disease, Berlin, Germany.

Syed-Shan-e-Ali, Z., Mahas, A., Vanderschuren, H., & Mahfouz, M. M. (2020). Engineering crops of the future: CRISPR approaches to develop climate-resilient and disease-resistant plants. Genome Biology, 21 (1), 289. doi:10.1186/s13059-020-02204-y
Peer Reviewed verified by ORBi

Mehta, D., Cornet, L., Hirsch-Hoffmann, M., Syed-Shan-e-Ali, Z., & Vanderschuren, H. (2020). Full-length sequencing of circular DNA viruses and extrachromosomal circular DNA using CIDER-Seq. Nature Protocols, 15 (5), 1673-1689. doi:10.1038/s41596-020-0301-0
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Vasudevan, K., Lentz, E. M., & Vanderschuren, H. (2020). Virus-Induced Gene Silencing (VIGS) in Cassava Using Geminivirus Agroclones. Methods in molecular biology (Clifton, N.J.), 2172, 51-64. doi:10.1007/978-1-0716-0751-0_5
Peer reviewed

Syed-Shan-e-Ali, Z., Cornet, L., Mehta, D., & Vanderschuren, H. (November 2019). CIDER-Seq: An efficient tool to study plant-geminivirus recombinant eccDNAs [Paper presentation]. 9th International Geminivirus Symposium and 7th ssDNA Comparative Virology Workshop (IGS 2019), Davis, United States.

Mehta, D., Sturchler, A., Anjanappa, R. B., Syed-Shan-e-Ali, Z., Hirsch-Hoffmann, M., Gruissem, W., & Vanderschuren, H. (25 April 2019). Linking CRISPR-Cas9 interference in cassava to the evolution of editing-resistant geminiviruses. Genome Biology, 20 (1), 80. doi:10.1186/s13059-019-1678-3
Peer Reviewed verified by ORBi

Mehta, D., Hirsch-Hoffmann, M., Were, M., Patrignani, A., Syed-Shan-e-Ali, Z., Were, H., Gruissem, W., & Vanderschuren, H. (25 January 2019). A new full-length circular DNA sequencing method for viral-sized genomes reveals that RNAi transgenic plants provoke a shift in geminivirus populations in the field. Nucleic Acids Research, 47 (2), 914. doi:10.1093/nar/gky914
Peer Reviewed verified by ORBi

Naqvi, R. Z., Syed-Shan-e-Ali, Z., Mukhtar, M. S., Amin, I., Mishra, B., Strickler, S., Mueller, L. A., Asif, M., & Mansoor, S. (2019). Transcriptomic analysis of cultivated cotton Gossypium hirsutum provides insights into host responses upon whitefly-mediated transmission of cotton leaf curl disease. PLoS ONE, 14 (2), 0210011. doi:10.1371/journal.pone.0210011
Peer Reviewed verified by ORBi

Hameed, A., Syed-Shan-e-Ali, Z., Sattar, M. N., Iqbal, Z., & Tahir, M. N. (2019). CRISPR technology to combat plant RNA viruses: A theoretical model for Potato virus Y (PVY)resistance. Microbial Pathogenesis, 133. doi:10.1016/j.micpath.2019.103551
Peer Reviewed verified by ORBi

Wasalathanthri, N. D., Syed-Shan-e-Ali, Z., Mahrt, E., Srivastava, S., Yu, K.-H., Johansson, K. S. L., Li, F., Jimenez, M. F. T., Lo, C., Allareddy, V., Romero-Molina, C., Mosegaard, S., Heaton, S. M., Park, J. J.-Y., Bacon, C. D., Yu, S., Polat, E. O., Wasalathanthri, D., Wang, W., & Agarwal, D. (2019). Challenging transitions [letter to the editor]. Science, 363 (6422), 24-26. doi:10.1126/science.aaw2641
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Naqvi, R. Z., Asif, M., Strickler, S., Shakir, S., Shafiq, M., Khan, A. M., Amin, I., Mishra, B., Mukhtar, M. S., Scheffler, B. E., Scheffler, J. A., Mueller, L. A., & Mansoor, S. (2019). Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton (Gossypium hirsutum). Plant Biotechnology Journal. doi:10.1111/pbi.13236
Peer Reviewed verified by ORBi

Khan, M. Z., Syed-Shan-e-Ali, Z., Amin, I., & Mansoor, S. (2019). A CRISPR Way for Fast-Forward Crop Domestication. Trends in Plant Science, 24 (4), 293-296. doi:10.1016/j.tplants.2019.01.011
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Cornet, L., Mehta, D., Patrignanic, A., & Vanderschuren, H. (28 October 2018). A Novel Method of Capturing and Sequencing Rolling Circle-Replicating Helitron Transposons [Paper presentation]. International plant epi / genetics symposium, Angers, France.

Syed-Shan-e-Ali, Z., Cornet, L., Comadira, G., Bawin, T., & Vanderschuren, H. (16 October 2018). Combining BAC and PacBio sequencing to resolve cassava mosaic disease resistance locus CMD2 [Paper presentation]. SASBi/SAGS congress 2018, Clarens, South Africa.

Hameed, A.* , Syed-Shan-e-Ali, Z.* , Shakir, S., & Mansoor, S. (2018). Applications of New Breeding Technologies for Potato Improvement. Frontiers in Plant Science, 9, 925. doi:10.3389/fpls.2018.00925
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Syed-Shan-e-Ali, Z. (2018). Translating Geminivirus Research From Model Arabidopsis-Cabbage Leaf Curl Virus Pathosystem To Fiels Crop Cotton (Gossypium Hirsutum) [Poster presentation]. 29th International Conference on Arabidopsis Research, Turku, Finland.

Pietrzak, B., Ward, A., Cheung, M. K., Schwendimann, B. A., Mollaoglu, G., Duong, M. T., Ulltveit-Moe, N., Allareddy, V., Dutton-Regester, K., Zhang, J., Scult, M. A., Naz, S., Singh, P. C., Yan, H. Y., Isaacson, K., Dennis, A. F., Al-Humaidan, E. I., Beardsley, F. R., Lo, C., ... Konstantinides, N. (2018). Education for the future [letter to the editor]. Science, 360 (6396), 1409-1412. doi:10.1126/science.aau3877
Peer Reviewed verified by ORBi

Segal, L., Agarwal, D., Isaacson, K. J., Oehmke, T. B., Kumar, B., Chen, J. S., Cusimano, J. M., Negi, S., Tiper, I., Bakermans, A. J., Jensen, M. M., Sanganyado, E., Syed-Shan-e-Ali, Z., Romero-Molina, C., Martinez, S. E., Anderson, S. M., Santos, G. M., De Lella Ezcurra, A. L., Farragher, J., ... Kerman, B. E. (2018). NextGen Voices: Quality mentoring [letter to the editor]. Science, 362 (6410), 22-24. doi:10.1126/science.aav5914
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z. (2018). The Past, Present and Future of Open Access. Basel, Switzerland: MDPI.

Syed-Shan-e-Ali, Z., Mukhtar, M. S., & Mansoor, S. (2018). Genome Editing: Targeting Susceptibility Genes for Plant Disease Resistance. Trends in Biotechnology, 36 (9), 898-906. doi:10.1016/j.tibtech.2018.04.005
Peer Reviewed verified by ORBi

Brotherton, C. A., Naz, S., Syed-Shan-e-Ali, Z., Dennis, A. F., Hamalainen, A., Strielkowski, W., Lyu, M.-J. A., Wenderott, J. K., Espinosa-Diez, C., Isaacson, K., Li, Y., Hassan, E., Hoyer, J. S., & Cusimano, J. M. (2018). NextGen VOICES: A postdoc's purpose [letter to the editor]. Science, 360 (6384), 26-27. doi:10.1126/science.aat6008
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Mansoor, S., & Paterson, A. (2018). The Rise of Cotton Genomics. Trends in Plant Science, 23 (11), 953-955. doi:10.1016/j.tplants.2018.08.009
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z. (21 May 2017). CRISPR/Cas9-Mediated Antiviral Immunity Against Geminiviruses [Poster presentation]. 30th International Conference on Antiviral Research (ICAR), Atlanta, United States.

Syed-Shan-e-Ali, Z., & Mansoor, S. (2017). Viral Vectors for Plant Genome Engineering. Frontiers in Plant Science, 8, 539. doi:10.3389/fpls.2017.00539
Peer Reviewed verified by ORBi

Naqvi, R. Z.* , Syed-Shan-e-Ali, Z.* , Akhtar, K. P., Strickler, S., Woldemariam, M., Mishra, B., Mukhtar, M. S., Scheffler, B. E., Scheffler, J. A., Jander, G., Mueller, L. A., Asif, M., & Mansoor, S. (2017). Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum. Scientific Reports, 7 (1), 15880. doi:10.1038/s41598-017-15963-9
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Syed-Shan-e-Ali, Z., Tashkandi, M., & Mahfouz, M. M. (2017). Engineering Molecular Immunity Against Plant Viruses. Progress in Molecular Biology and Translational Science, 149, 167-186. doi:10.1016/bs.pmbts.2017.03.009
Peer reviewed

Syed-Shan-e-Ali, Z., Martin, D. P., Amin, I., Farooq, M., & Mansoor, S. (2017). Tomato leaf curl New Delhi virus: a widespread bipartite begomovirus in the territory of monopartite begomoviruses. Molecular Plant Pathology, 18 (7), 901-911. doi:10.1111/mpp.12481
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Shakir, S., Farooq, M., Amin, I., & Mansoor, S. (2017). First Report of a Novel Strain of Tomato yellow leaf curl virus Causing Yellow Leaf Curl Disease on Cluster Bean in Pakistan. Plant Disease, 101 (6), 1071. doi:10.1094/pdis-12-16-1859-pdn
Peer Reviewed verified by ORBi

Zubair, M.* , Syed-Shan-e-Ali, Z.* , Shakir, S., Farooq, M., Amin, I., Scheffler, J. A., Scheffler, B. E., & Mansoor, S. (2017). Multiple begomoviruses found associated with cotton leaf curl disease in Pakistan in early 1990 are back in cultivated cotton. Scientific Reports, 7 (1), 680. doi:10.1038/s41598-017-00727-2
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Syed-Shan-e-Ali, Z., Shakir, S., Malik, H. J., Farooq, M., Amin, I., & Mansoor, S. (2017). First report of Tomato leaf curl New Delhi virus on Calotropis procera, a weed as potential reservoir begomovirus host in Pakistan. Plant Disease, 101 (6), 1071. doi:10.1094/pdis-10-16-1539-pdn
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Shakir, S., Farooq, M., Amin, I., & Mansoor, S. (2017). First Report of Alternanthera yellow vein virus From Eclipta prostrata in Pakistan. Plant Disease, 101 (1), 266. doi:10.1094/pdis-08-16-1164-pdn
Peer Reviewed verified by ORBi

Zubair, M.* , Syed-Shan-e-Ali, Z.* , Shakir, S., Amin, I., & Mansoor, S. (2017). An Insight into Cotton Leaf Curl Multan Betasatellite, the Most Important Component of Cotton Leaf Curl Disease Complex. Viruses, 9 (10). doi:10.3390/v9100280
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Syed-Shan-e-Ali, Z., Mahfouz, M. M., & Mansoor, S. (2017). CRISPR-Cpf1: A New Tool for Plant Genome Editing. Trends in Plant Science, 22 (7), 550-553. doi:10.1016/j.tplants.2017.05.001
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Briddon, R. W., & Mansoor, S. (2017). Engineering Dual Begomovirus-Bemisia tabaci Resistance in Plants. Trends in Plant Science, 22 (1), 6-8. doi:10.1016/j.tplants.2016.11.005
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z. (30 March 2016). Frequent occurrence of Tomato leaf curl New Delhi virus in cotton leaf curl disease affected cotton in Pakistan [Paper presentation]. 1st International Conference on Advancements in Biotechnology, Faisalabad, Pakistan.

Syed-Shan-e-Ali, Z., Ijaz, S., Khan, A. I., & Rana, I. A. (2016). Development of source independent micropropagation system in Dalbergia sissoo Roxb, as a basis for germplasm conservation and disease free plants production. Molecular Plant Breeding, 7 (15), 1-12. doi:10.5376/mpb.2016.07.0015
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Amin, I., Iqbal, Z., Akhtar, K. P., Scheffler, B. E., & Mansoor, S. (2016). Sesbania bispinosa, a new host of a begomovirus-betasatellite complex in Pakistan. Canadian Journal of Plant Pathology, 38 (1), 107-111. doi:10.1080/07060661.2015.1128980
Peer Reviewed verified by ORBi

Ali, Z., Ali, S., Tashkandi, M., Syed-Shan-e-Ali, Z., & Mahfouz, M. M. (2016). CRISPR/Cas9-Mediated Immunity to Geminiviruses: Differential Interference and Evasion. Scientific Reports, 6, 26912. doi:10.1038/srep26912
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Mansoor, S., Ali, Z., Tashkandi, M., & Mahfouz, M. M. (2016). Engineering Plants for Geminivirus Resistance with CRISPR/Cas9 System. Trends in Plant Science, 21 (4), 279-281. doi:10.1016/j.tplants.2016.01.023
Peer Reviewed verified by ORBi

Ali, Z., Ali, S., Tashkandi, M., Syed-Shan-e-Ali, Z., & Mahfouz, M. M. (2016). CRISPR/Cas9-mediated Immunity to Geminiviruses. VirusDisease. doi:10.1007/s13337-016-0351-7
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Shafiq, M., Amin, I., Scheffler, B. E., Scheffler, J. A., Briddon, R. W., & Mansoor, S. (2016). Frequent Occurrence of Tomato Leaf Curl New Delhi Virus in Cotton Leaf Curl Disease Affected Cotton in Pakistan. PLoS ONE, 11 (5), 0155520. doi:10.1371/journal.pone.0155520
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Tashkandi, M., Mansoor, S., & Mahfouz, M. M. (2016). Engineering Plant Immunity: Using CRISPR/Cas9 to Generate Virus Resistance. Frontiers in Plant Science, 7, 1673. doi:10.3389/fpls.2016.01673
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z. (August 2015). Evolution of virus complex associated with cotton leaf curl disease [Paper presentation]. United States Department of Agriculture (USDA) and International Center for Agricultural Research in the Dry Area (ICARDA) annual meeting, Islamabad, Pakistan.

Syed-Shan-e-Ali, Z., Iqbal, Z., Amin, I., & Mansoor, S. (2015). First report of Tomato leaf curl Gujarat virus, a bipartite begomovirus on cotton showing leaf curl symptoms in Pakistan. Plant Disease, 99 (11), 1655. doi:10.1094/pdis-02-15-0195-pdn
Peer Reviewed verified by ORBi

Syed-Shan-e-Ali, Z., Mansoor, S., Amin, I., & Briddon, R. W. (28 March 2014). Occurrence of a bipartite begomovirus infecting cotton (Gossypium hirsutum L.) [Paper presentation]. 1st National students conference on biological sciences, Faisalabad, Pakistan.

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