  | Lemaitre, F.* , Chakrama, F.* , O'Grady, T., Chabot, B., Piette, J., Colige, A., Lambert, C., Dequiedt, F.* , & Habraken, Y.*. (02 February 2023). The transcription factor c-Jun mediates specific reprogramming of pre-mRNA splicing during platinum-based therapy via RBM39 [Poster presentation]. séminaire des chercheurs Télévie 2023. * These authors have contributed equally to this work. |
  | Lemaitre, F.* , Chakrama, F.* , O'Grady, T., Peulen, O., Rademaker, G., Deward, A., Chabot, B., Piette, J., Colige, A., Lambert, C., Dequiedt, F.* , & Habraken, Y.*. (09 December 2022). The transcription factor c-Jun inhibits RBM39 to reprogram pre-mRNA splicing during genotoxic stress. Nucleic Acids Research, 50 (22), 12768 - 12789. doi:10.1093/nar/gkac1130  Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
| Lemaitre, F.* , Chakrama, F.* , O'Grady, T., Chabot, B., Piette, J., Colige, A., Lambert, C., Dequiedt, F.* , & Habraken, Y.*. (09 September 2022). The transcription factor c-Jun inhibits RBM39 to reprogram mRNA splicing during genotoxic stress [Poster presentation]. Interuniversity PhD student day. * These authors have contributed equally to this work. |
 | Lemaitre, F.* , Chakrama, F.* , O'Grady, T., Dequiedt, F.* , & Habraken, Y.*. (08 April 2022). c-Jun directly controls spliceosome specificity through RBM39 binding in response to genotoxic chemotherapy [Poster presentation]. séminaire des chercheurs Télévie 2022. * These authors have contributed equally to this work. |
 | O'Grady, T.* , NJOCK, M.-S.* , Lion, M., Bruyr, J., Mariavelle, E., Galvan, B., Boeckx, A., Struman, I.* , & Dequiedt, F.*. (24 March 2022). Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels. BMC Biology, 20 (1), 72. doi:10.1186/s12915-022-01277-4 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
Lemaitre, F., Chakrama, F., O'Grady, T., Chabot, B., Piette, J., Colige, A., Lambert, C., Dequiedt, F., & Habraken, Y. (March 2022). The transcription factor c-Jun inhibits RBM39 to reprogram pre-mRNA splicing during genotoxic stress [Poster presentation]. THE MULTIPLE FACETS OF RNA IN DEVELOPMENT AND DISEASE, Nice, France. |
 | Duchemin, A., O'Grady, T., Hanache, S., Mereau, A., Thiry, M., Wacheul, L., Michaux, C., Perpète, E., Hervouet, E., Peixoto, P., Ernst, F., Audic, Y., Dequiedt, F., Lafontaine, D., & Mottet, D. (2021). DHX15-independent roles for TFIP11 in U6 snRNA modification, U4/U6.U5 tri-snRNP assembly and pre-mRNA splicing fidelity. Nature Communications. doi:10.1038/s41467-021-26932-2 Peer Reviewed verified by ORBi |
| Hanache, S., Duchemin, A., O'Grady, T., Mereau, A., Thiry, M., Wacheul, L., Michaux, C., Perpète, E., Hervouet, E., Peixoto, P., Ernst, F., Audic, Y., Dequiedt, F., Lafontaine, D., & Mottet, D. (17 October 2021). DHX15-independent roles for TFIP11 in U6 snRNA modi!cation, U4/U6.U5 tri-snRNP assembly and pre-mRNA splicing fidelity [Poster presentation]. EMBL. |
 | Veloso, A., Martin, M., Bruyr, J., O'Grady, T., Deroanne, C., Mottet, D., Twizere, J.-C., Cherrier, T.* , & Dequiedt, F.*. (2019). Dephosphorylation of HDAC4 by PP2A-Bdelta unravels a new role for the HDAC4/MEF2 axis in myoblast fusion. Cell death & disease, 10 (7), 512. doi:10.1038/s41419-019-1743-6 Peer reviewed* These authors have contributed equally to this work. |
 | Théry, C., Witwer, K. W., Aikawa, E., Alcaraz, M. J., Anderson, J. D., Andriantsitohaina, R., Antoniou, A., Arab, T., Archer, F., Atkin-Smith, G. K., Ayre, D. C., Bach, J.-M., Bachurski, D., Baharvand, H., Balaj, L., Baldacchino, S., Bauer, N. N., Baxter, A. A., Bebawy, M., ... Zuba-Surma, E. K. (November 2018). Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines. Journal of Extracellular Vesicles, 7 (1), 1535750. doi:10.1080/20013078.2018.1535750 Peer Reviewed verified by ORBi |
Njock, M.-S., O'Grady, T., Nivelles, O., Dequiedt, F., & Struman, I. (13 September 2018). Tumor microenvironment affects the composition of endothelial-derived exosomes: impact in tumor progression [Paper presentation]. GIGA-CANCER DAY, Liège, Belgium. |
O'Grady, T., Njock, M.-S., Lion, M., Struman, I., & Dequiedt, F. (May 2018). Integrating long and short sequencing data for a global overview of the endothelial extracellular vesicle RNA landscape [Poster presentation]. International Society for Extracellular Vesicles, Barcelone, Spain. |
 | Njock, M.-S., O'Grady, T., Dequiedt, F., & Struman, I. (2017). Tumour microenvironment affects the composition of endothelial cell-derived extracellular vesicles: impact in tumour progression. Journal of Extracellular Vesicles. doi:10.1080/20013078.2017.1310414 |
 | O'Grady, T., Baddoo, M., & Flemington, E. K. (2017). Analysis of EBV Transcription Using High-Throughput RNA Sequencing. Methods in Molecular Biology, 1532, 105-121. doi:10.1007/978-1-4939-6655-4_7 Peer Reviewed verified by ORBi |
Njock, M.-S., O'Grady, T., Nivelles, O., Dequiedt, F., & Struman, I. (2017). Tumor microenvironment affects the composition of endothelial-derived extracellular vesicles: Impact in tumor progression [Poster presentation]. International Society for Extracellular Vesicles Annual Meeting. |
O'Grady, T. (2016). Analysis of the Epstein-Barr Virus lytic transcriptome using high-throughput sequencing methods [Doctoral thesis, ULiège - Université de Liège]. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/218885 |
O'Grady, T. (2016). TRIMD: Transcriptome Resolution by Integration of Multi-platform Data. |
Guedri, K., O'Grady, T., Rambout, X., & Dequiedt, F. (2016). Role of Erg subfamily of Ets transcription factors in the regulation of pre-mRNA alternative splicing [Poster presentation]. Séminaire des chercheurs Télévie 2016, Belgium. |
 | O'Grady, T., Wang, X., Honer Zu Bentrup, K., Baddoo, M., Concha, M., & Flemington, E. K. (2016). Global transcript structure resolution of high gene density genomes through multi-platform data integration. Nucleic Acids Research, 44 (18), 145. doi:10.1093/nar/gkw629 Peer Reviewed verified by ORBi |
O'Grady, T., Wang, X., Cao, S., Concha, M., Baddoo, M., Höner zu Bentrup, K., & Flemington, E. K. (October 2015). Examining lncRNAs in highly transcribed, gene-dense genomes [Poster presentation]. The Non-Coding Genome EMBL Symposium, Heidelberg, Germany. |
O'Grady, T., & Flemington, E. K. (March 2015). Novel IL20 isoforms in EBV-infected B cells [Poster presentation]. The Golden Anniversary of B Cell Discovery Keystone Symposium. |
 | Cao, S., Moss, W., O'Grady, T., Concha, M., Strong, M. J., Wang, X., Yu, Y., Baddoo, M., Zhang, K., Fewell, C., Lin, Z., Dong, Y., & Flemington, E. K. (2015). New Noncoding Lytic Transcripts Derived from the Epstein-Barr Virus Latency Origin of Replication, oriP, Are Hyperedited, Bind the Paraspeckle Protein, NONO/p54nrb, and Support Viral Lytic Transcription. Journal of Virology, 89 (14), 7120-32. doi:10.1128/JVI.00608-15 Peer Reviewed verified by ORBi |
 | Cao, S., Strong, M. J., Wang, X., Moss, W. N., Concha, M., Lin, Z., O'Grady, T., Baddoo, M., Fewell, C., Renne, R., & Flemington, E. K. (2015). High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. Journal of Virology, 89 (1), 713-29. doi:10.1128/JVI.02570-14 Peer Reviewed verified by ORBi |
 | O'Grady, T., Cao, S., Strong, M. J., Concha, M., Wang, X., Splinter Bondurant, S., Adams, M., Baddoo, M., Srivastav, S. K., Lin, Z., Fewell, C., Yin, Q., & Flemington, E. K. (2014). Global bidirectional transcription of the Epstein-Barr virus genome during reactivation. Journal of Virology, 88 (3), 1604-16. doi:10.1128/JVI.02989-13 Peer Reviewed verified by ORBi |
O'Grady, T., & Flemington, E. K. (2013). Long noncoding RNA expression in lymphoma [Poster presentation]. Noncoding RNAs in Development and Cancer Keystone Symposium. |
 | Strong, M. J., O'Grady, T., Lin, Z., Xu, G., Baddoo, M., Parsons, C., Zhang, K., Taylor, C. M., & Flemington, E. K. (2013). Epstein-Barr virus and human herpesvirus 6 detection in a non-Hodgkin's diffuse large B-cell lymphoma cohort by using RNA sequencing. Journal of Virology, 87 (23), 13059-62. doi:10.1128/JVI.02380-13 Peer Reviewed verified by ORBi |
McCrillis, A., Vieira, D., Beam, P., & O'Grady, T. (2012). Survival and success beyond grad school: improving library services to postdoctoral researchers [Paper presentation]. Medical Library Association Annual Meeting. |
 | Makarov, V., O'Grady, T., Cai, G., Lihm, J., Buxbaum, J. D., & Yoon, S. (2012). AnnTools: a comprehensive and versatile annotation toolkit for genomic variants. Bioinformatics, 28 (5), 724-5. doi:10.1093/bioinformatics/bts032 Peer Reviewed verified by ORBi |
O'Grady, T., Liu, J., Saifudeen, Z., & El-Dahr, S. (2012). Dissecting p63 function in renal development: a ChIP-Seq approach [Poster presentation]. Tulane University Health Sciences Research Days. |
Makarov, V., O'Grady, T., Cai, G., Lihm, J., Buxbaum, J., & Yoon, S. (2011). AnnTools: a comprehensive and versatile annotation toolkit for genomic variants [Poster presentation]. 12th International Congress of Human Genetics. |
Lihm, J., Makarov, V., O'Grady, T., Cai, G., Takahashi, N., Parkhomento, E., Gazoiu, M., Buxbaum, J., & Yoon, S. (2011). Detection of copy number variation in whole exome sequencing data using read-depth of coverage [Poster presentation]. 12th International Congress of Human Genetics. |
 | O'Grady, T., & Beam, P. S. (2011). Postdoctoral scholars: a forgotten library constituency? Science and Technology Libraries, 30 (1), 76-79. doi:10.1080/0194262X.2011.545680 Peer Reviewed verified by ORBi |
Anderson, E., & O'Grady, T. (2011). Framing the clinical question: a collaboration to enhance data warehouse user education [Poster presentation]. AMIA Summit on Clinical Research Informatics. |
O'Grady, T., & Beam, P. (2010). Fueling the research engine: improving library outreach and services to postdoctoral researchers [Poster presentation]. Special Libraries Association Annual Conference. |
 | O'Grady, T. (2008). Bioinformatics: A brief review of resources on the Web. College and Research Libraries News, 69 (7), 404-408. doi:10.5860/crln.69.7.8027 |
 | O'Grady, T. (2007). Entrez and BLAST: Precision and Recall in Searches of NCBI Databases. Issues in Science and Technology Librarianship, 52 (Fall). Peer Reviewed verified by ORBi |