  | Lupo, V., Roomans, C., Royen, E., Ongena, L., Jacquemin, O., Mullender, C., Kerff, F., & Baurain, D. (18 March 2025). Identification and characterization of archaeal pseudomurein biosynthesis genes through pangenomics. mSystems, 10 (3), 0140124. doi:10.1128/msystems.01401-24  Peer Reviewed verified by ORBi |
 | Cornet, L., Lupo, V., Declerck, S., & Baurain, D. (10 January 2024). Evaluation of Genomic Contamination Detection Tools and Influence of Horizontal Gene Transfer on Their Efficiency through Contamination Simulations at Various Taxonomic Ranks. Applied Microbiology, 4 (1), 124-132. doi:10.3390/applmicrobiol4010009 Peer Reviewed verified by ORBi |
 | Cornet, L., Durieu, B., Baert, F., D'hooge Elisabeth, Colignon, D., Meunier, L., Lupo, V., Cleenwerck, I., Daniel, H.-M., Rigouts, L., Sirjacobs, D., Declerck, S., Vandamme, P., Wilmotte, A., Baurain, D., & Becker, P. (September 2023). The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics [Paper presentation]. ECCO XLI – 2023, Bruxelles, Belgium. |
Cornet, L., Frederik Baert, Elizabet D'hooge, David Colignon, Loic Meunier, Benoit Durieu, Ilse Cleenwerck, Heide-Marie Daniel, Leen Rigouts, Stéphane Declerck, Peter Vandamme, Wilmotte, A., Lupo, V., Baurain, D., & Pierre Becker. (2023). The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics [Paper presentation]. ICCC15. Editorial reviewed |
 | Cornet, L., Durieu, B., Baert, F., D'hooge, E., Colignon, D., Meunier, L., Lupo, V., Cleenwerck, I., Daniel, H.-M., Rigouts, L., Sirjacobs, D., Declerck, S., Vandamme, P., Wilmotte, A., Baurain, D., & Becker, P. (28 December 2022). The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics. GigaScience, 12. doi:10.1093/gigascience/giad022 Peer Reviewed verified by ORBi Dataset: https://github.com/Lcornet/GENERA |
 | Lupo, V. (2022). A journey into prokaryotic cell-wall evolution: the two half-brothers Murein and Pseudomurein [Doctoral thesis, ULiège - Université de Liège]. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/298483 |
 | Léonard, R., Sauvage, E., Lupo, V., Perrin, A., Sirjacobs, D., Charlier, P., Kerff, F., & Baurain, D. (18 February 2022). Was the last bacterial common ancestor a monoderm after all? Genes, 13. doi:10.3390/genes13020376 Peer Reviewed verified by ORBi |
 | Lupo, V., Mercuri, P., Frère, J.-M., Joris, B., Galleni, M., Baurain, D.* , & Kerff, F.*. (2022). An Extended Reservoir of Class-D Beta-Lactamases in Non-Clinical Bacterial Strains. Microbiology Spectrum, 10 (2), 0031522. doi:10.1128/spectrum.00315-22 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | Lupo, V., Van Vlierberghe, M., Vanderschuren, H., Kerff, F., Baurain, D., & Cornet, L. (2021). Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics. Frontiers in Microbiology, 12, 755101. doi:10.3389/fmicb.2021.755101 Peer Reviewed verified by ORBi |
 | Córdoba Jacoste, F. J., Perez, E., Van Vlierberghe, M., Bertrand, A., Lupo, V., Cardol, P., & Baurain, D. (2021). De Novo Transcriptome Meta-Assembly of the Mixotrophic Freshwater Microalga Euglena gracilis. Genes, 12 (6). doi:10.3390/genes12060842 Peer Reviewed verified by ORBi |