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Lavergne Arnaud

GIGA Platform Genomics

Dpt. de gestion vétérinaire des Ressources Animales (DRA) > Génomique animale

See author's contact details
ORCID
0000-0003-4817-3202
Main Referenced Co-authors
Peers, Bernard  (17)
Voz, Marianne  (17)
Manfroid, Isabelle  (15)
Bergemann, David  (11)
Bourdouxhe, Jordane  (7)
Main Referenced Keywords
regeneration (4); Zebrafish (4); zebrafish (4); danio rerio (3); Animals (2);
Main Referenced Unit & Research Centers
GIGA I3-Laboratory for Organogenesis and Regeneration -ULiège [BE] (2)
Zebrafish Development and Disease Models laboratory, Giga-Stem Cells (2)
GIGA CRC (Cyclotron Research Center) In vivo Imaging-Aging & Memory - ULiège [BE] (1)
GIGA Medical Genomics-Unit of Animal Genomics - ULiège [BE] (1)
GIGA Platform Genomics - ULiège [BE] (1)
Main Referenced Disciplines
Biochemistry, biophysics & molecular biology (17)
Anatomy (cytology, histology, embryology...) & physiology (6)
Genetics & genetic processes (3)
Life sciences: Multidisciplinary, general & others (2)
Endocrinology, metabolism & nutrition (1)

Publications (total 29)

The most downloaded
756 downloads
Lavergne, A. (2020). Transcriptomic landscape of pancreatic cell types and the identification of a common Pax6 - dependent gene regulatory network in pancreatic and intestinal endocrine cells [Doctoral thesis, ULiège - Université de Liège]. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/250749 https://hdl.handle.net/2268/250749

The most cited

56 citations (Scopus®)

Payen, V. L.* , Lavergne, A.* , Alevra Sarika, N., Colonval, M., Karim, L., Deckers, M., Najimi, M., Coppieters, W., CHARLOTEAUX, B., Sokal, E. M., & El Taghdouini, A. (21 March 2021). Single-cell RNA sequencing of human liver reveals hepatic stellate cell heterogeneity. JHEP Reports: Innovation in Hepatology, 3 (3), 100278. doi:10.1016/j.jhepr.2021.100278 https://hdl.handle.net/2268/288808

Massoz, L., Bergemann, D., Lavergne, A., Reynders, C., Désiront, C., Goossens, C., Flasse, L., Peers, B., Voz, M., & Manfroid, I. (2023). Negative cell cycle regulation by Calcineurin is necessary for proper beta cell regeneration in zebrafish. eLife. doi:10.7554/elife.88813.1
Peer reviewed

Dewals, B. G., Yang, B., Sanchez, G. S., Lavergne, A., Piedfort, O., Peng, G., Aguirre, A. M., Petrellis, G., Katsandegwaza, B., Isterdael, G. V., Duyse, J. V., Bai, Q., Marichal, T., Machiels, B., Nitschke, L., Najafabadi, H., King, I., & Vermijlen, D. (2023). IL-4 induces CD22 expression to restrain the effector program of self-reactive virtual memory T cells. Research Square. doi:10.21203/rs.3.rs-2747693/v1

Georges, A., Lavergne, A., Mandai, M., Lepiemme, F., Karim, L., Demeulenaere, L., Aguilar Ortmans, D., Schyns, M., Nguyen, L., Rakic, J.-M., Takahashi, M., Georges, M., & Takeda, H. (21 January 2023). Comparing the transcriptome of developing native and iPSC-derived mouse retinae by single cell RNA sequencing. Scientific Reports, 13 (1), 1223. doi:10.1038/s41598-023-28429-y
Peer Reviewed verified by ORBi

Franssen, D., Johansson, H. K. L., Lopez-Rodriguez, D., Lavergne, A., Terwagne, Q., Boberg, J., Christiansen, S., Svingen, T., & Parent, A.-S. (2023). Perinatal exposure to the fungicide ketoconazole alters hypothalamic control of puberty in female rats. Frontiers in Endocrinology, 14, 1140886. doi:10.3389/fendo.2023.1140886
Peer Reviewed verified by ORBi

Raman, R., Zappia, J., Nivelle, R., Bahri, M. A., Lavergne, A., Caetano da Silva Caroline, Degueldre Christian, Ostertag Agnes, Renn, J., Collet Corrine, Plenevaux, A., Solal Cohen Martine, Henrotin, Y., & Muller, M. (07 September 2022). Zebrafish Osteoblast Transcriptome reveals genes that encode bone extra cellular matrix proteins which on mutating affect bone development [Poster presentation]. Deutsche Gesellschaft for Martrixbiologie e.V. 2022 (DGMB 2022), Frankfurt am Main, Germany.
Peer reviewed

Raman, R., Salomao D’Cruz Alison, Dikoum Cyrille, Zappia, J., Anthony Mishal, Caetano da Silva Caroline, Nivelle, R., Lavergne, A., Degueldre Christian, Ostertag Agnes, Bahri, M. A., Renn, J., Collet Corrine, Plenevaux, A., Solal Cohen Martine, Henrotin, Y., & Muller, M. (2022). Osteoblast Transcriptome in 4 days old zebrafish larvae and the role of Fbln1 and Col10a1a bone extracellular matrix proteins during skeletal development [Paper presentation]. German Society for Matrix biology (Deutsche Gesellschaft fuer Matrixbiologie e.V.) DGMB 2022, Frankfurt am Main, Germany.

Wathieu, C., Tielens, S., Lavergne, A., Shostak, K., Rolot, M., El Hachem, N., Xu, X., Close, P., Nguyen, L., Desmet, C., Dewals, B. G., & CHARIOT, A. (10 May 2022). A role for the tRNA-modifying enzyme Elp3 in tuft cell differentiation and in the immune response in the intestine [Paper presentation]. Type 2 Immunity in Early Life Symposium, Liège, Belgium.

Reuter, A.-S., Stern, D., Bernard, A., Goossens, C., Lavergne, A., Flasse, L., Von Berg, V., Manfroid, I., Peers, B., & Voz, M. (14 March 2022). Identification of an evolutionarily conserved domain in Neurod1 favouring enteroendocrine versus goblet cell fate. PLoS Genetics, 18 (3), 1010109. doi:10.1371/journal.pgen.1010109
Peer Reviewed verified by ORBi

Tang, S. C., Lion, Q., Peulen, O., Chariot, P., Lavergne, A., Mayer, A., Allepuz Fuster, P., Close, P., Klein, S., Florin, A., Büttner, R., Nemazanyy, I., Shostak, K., & Chariot, A. (29 January 2022). The E3 ligase COP1 promotes ERα signaling and suppresses EMT in breast cancer. Oncogene, 41, 173-190. doi:10.1038/s41388-021-02038-3
Peer Reviewed verified by ORBi

Carril Pardo, C. A., Massoz, L., Dupont, M., Bergemann, D., Bourdouxhe, J., Lavergne, A., Tarifeño Saldivia, E., Helker, C. S., Stainier, D. Y. T., Peers, B., Voz, M., & Manfroid, I. (2022). A δ-cell subpopulation with pro-β cell identity contributes to efficient age-independent recovery in a zebrafish diabetes model. eLife, 11. doi:10.7554/eLife.67576
Peer Reviewed verified by ORBi

Raman, R., Zappia, J., Nivelle, R., Lavergne, A., Renn, J., Henrotin, Y., & Muller, M. (11 October 2021). Osteoblast populations and bone extracellular matrix proteins during skeletal development in zebrafish [Poster presentation]. 14th Zebrafish Disease Models Conference (ZDMS'14) Virtual Conference, Durham, United States - North Carolina.
Peer reviewed

Payen, V. L.* , Lavergne, A.* , Alevra Sarika, N., Colonval, M., Karim, L., Deckers, M., Najimi, M., Coppieters, W., CHARLOTEAUX, B., Sokal, E. M., & El Taghdouini, A. (21 March 2021). Single-cell RNA sequencing of human liver reveals hepatic stellate cell heterogeneity. JHEP Reports: Innovation in Hepatology, 3 (3), 100278. doi:10.1016/j.jhepr.2021.100278
Peer reviewed
* These authors have contributed equally to this work.

Jacques, S., Arjomand, A., Perée, H., COLLINS, P., Mayer, A., Lavergne, A., Wéry, M., Mni, M., Hego, A., Thuillier, V., Becker, G., Bahri, M. A., Plenevaux, A., Di Valentin, E., Oury, C., MOUTSCHEN, M., Delvenne, P., Paquot, N., & Rahmouni, S. (2021). Dual‑specificity phosphatase 3 deletion promotes obesity, non‑alcoholic steatohepatitis and hepatocellular carcinoma. Scientific Reports, 11, 5817. doi:10.1038/s41598-021-85089-6
Peer Reviewed verified by ORBi

Lavergne, A. (2020). Transcriptomic landscape of pancreatic cell types and the identification of a common Pax6 - dependent gene regulatory network in pancreatic and intestinal endocrine cells [Doctoral thesis, ULiège - Université de Liège]. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/250749

GEORGES, A., Lavergne, A., Mandai, M., Lepiemme, F., Karim, L., Demeulenaere, L., Aguilar Ortmans, D., Schyns, M., Nguyen, L., RAKIC, J.-M., Takahashi, M., Georges, M., & Takeda, H. (2020). Combined analysis of single cell RNA-Seq and ATAC-Seq data reveals putative regulatory toggles operating in native and iPS-derived retina. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/292544. doi:10.1101/2020.03.02.972497

Lavergne, A., Tarifeño-Saldivia, E., Pirson, J., Reuter, A.-S., Flasse, L., Manfroid, I., Voz, M.* , & Peers, B.*. (2020). Pancreatic and intestinal endocrine cells in zebrafish share common transcriptomic signatures and regulatory programmes. BMC Biology, 18 (1), 109. doi:10.1186/s12915-020-00840-1
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Carril Pardo, C. A., Bergemann, D., Massoz, L., Lavergne, A., Bourdouxhe, J., Peers, B., Voz, M., & Manfroid, I. (17 May 2019). Altered identity and function of the regenerated pancreatic ß-cells compared to control ß-cells in zebrafish [Poster presentation]. 2nd Interdisciplinary PhD Student Day organized by the EDT BCMB, Brussel, Belgium.

Bernard, A., Tarifeno, E., Lavergne, A., Peers, B., & Voz, M. (04 June 2018). Functional characterization of Lmo1, a novel pancreatic regulator, highly expressed and conserved across distant species [Poster presentation]. A Roadmap towards Diabetes Treatment: To the Beta Cell and Beyond.

Carril Pardo, C. A., Bergemann, D., Massoz, L., Lavergne, A., Bourdouxhe, J., Peers, B., Voz, M., & Manfroid, I. (04 June 2018). Pancreatic delta cells could be a new source of beta cells in adult zebrafish [Poster presentation]. f-TALES: A Roadmap towards Diabetes Treatment: To the Beta Cell and Beyond, Brussel, Belgium.

Massoz, L., Bergemann, D., Lavergne, A., Bourdouxhe, J., Carril, C., Voz, M., Peers, B., & Manfroid, I. (June 2018). Insight into the Molecular Mechanisms of Pancreatic Beta Cell Regeneration from the Ducts in Zebrafish [Poster presentation]. F-tales congress : A Roadmap towards Diabetes Treatment: To the Beta Cell and Beyond.

Lavergne, A., Tarifeno, E., Pirson, J., Bergemann, D., Voz, M., Manfroid, I., & Peers, B. (09 April 2018). Identification of Pax6-dependent regulatory networks during endocrine pancreatic cells and enteroendocrine cells differentiation in zebrafish [Poster presentation]. Next Generation Sequencing Conference 2018 - Structural Variation and Populations Genomics Conference, Barcelona, Spain.

Massoz, L., Bergemann, D., Lavergne, A., Bourdouxhe, J., Carril Pardo, C., Peers, B., Voz, M., & Manfroid, I. (15 September 2017). Identification of Signaling Pathways Regulating Beta Cell Regeneration in Zebrafish [Poster presentation]. BSCDB Cell differentiation in normal and pathological conditions, Woluwe, Belgium.

Lavergne, A., Tarifeno, E., Pirson, J., Bergemann, D., Voz, M., Manfroid, I., & Peers, B. (14 September 2017). Identification of Pax6-dependent regulatory networks during endocrine pancreatic cells and enteroendocrine cells differentiation in zebrafish [Poster presentation]. Cell differentiation in normal and pathological conditions, Woluwe, Belgium.

Carril Pardo, C. A., Bergemann, D., Massoz, L., Lavergne, A., Bourdouxhe, J., Peers, B., Voz, M., & Manfroid, I. (14 September 2017). Toward discovery of novel key genes for pancreatic beta cell regeneration in zebrafish [Poster presentation]. BSCDB Cell differentiation in normal and pathological conditions, Woluwe, Belgium.

Bernard, A., Tarifeno, E., Lavergne, A., Peers, B., & Voz, M. (04 July 2017). Functional characterization of novel genes highly expressed and conserved across distant species identified by transcriptome analysis of pancreatic cells [Poster presentation]. 10th EuropeanZebrafishMeeting, Budapest, Hungary.

Tarifeño Saldivia, E., Lavergne, A., Bernard, A., Padamata, K., Bergemann, D., Voz, M., Manfroid, I., & Peers, B. (21 March 2017). Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes. BMC Biology, 15. doi:10.1186/s12915-017-0362-x
Peer Reviewed verified by ORBi

Tarifeño-Saldivia, E., Lavergne, A., Bernard, A., Padamata, K., Bergemann, D., Voz, M., Manfroid, I., & Peers, B. (21 March 2017). Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes [Paper presentation]. 7th meeting IAPVII-07 DevRepair, Leuven, Belgium.

Tarifeño Saldivia, E., Lavergne, A., Padamata, K., Bernard, A., Voz, M., Manfroid, I., & Peers, B. (July 2016). Transcriptional landscape of the major pancreatic cells reveals conserved expression patterns amongst distant vertebrate species [Poster presentation]. 12TH INTERNATIONAL CONFERENCE ON ZEBRAFISH DEVELOPMENT AND GENETICS, Orlando, United States.

Bergemann, D., Ghaye, A., Tarifeño Saldivia, E., Lavergne, A., Bourdouxhe, J., Peers, B., Voz, M., & Manfroid, I. (18 March 2016). Pancreatic Beta Cell Regeneration: Duct Cells Act as Progenitors in Adult Zebrafish [Poster presentation]. International Fishmed Conference on Zebrafish Research, Warsaw, Poland.

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