Cornet, L., Durieu, B., Baert, F., D'hooge Elisabeth, Collignon, D., Meunier, L., Lupo, V., Cleenwerck, I., Daniel, H.-M., Rigouts, L., Sirjacobs, D., Declerck, S., Vandamme, P., Wilmotte, A., Baurain, D., & Becker, P. (September 2023). The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics [Paper presentation]. ECCO XLI – 2023, Bruxelles, Belgium. |
Cornet, L., Durieu, B., Baert, F., D'hooge, E., Colignon, D., Meunier, L., Lupo, V., Cleenwerck, I., Daniel, H.-M., Rigouts, L., Sirjacobs, D., Declerck, S., Vandamme, P., Wilmotte, A., Baurain, D., & Becker, P. (28 December 2022). The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics. GigaScience, 12. doi:10.1093/gigascience/giad022 |
Léonard, R., Sauvage, E., Lupo, V., Perrin, A., Sirjacobs, D., Charlier, P., Kerff, F., & Baurain, D. (18 February 2022). Was the last bacterial common ancestor a monoderm after all? Genes, 13. doi:10.3390/genes13020376 |
Richir, J., Champenois, W., Engels, G., Abadie, A., Gobert, S., Lepoint, G., Silva, J., Santos, R., Sirjacobs, D., & Borges, A. (31 January 2020). A 15-Month Survey of Dimethylsulfoniopropionate and Dimethylsulfoxide Content in Posidonia oceanica. Frontiers in Ecology and Evolution, 7 (510), 1-15. doi:10.3389/fevo.2019.00510 |
Sirjacobs, D., Pelaprat, C., Leduc, M., Volpon, A., Chery, A., Gobert, S., & Lejeune, P. (21 March 2018). Seaweed distribution in Calvi bay : from 35 years of temporal changes towards R modelling of distribution maps [Poster presentation]. Climate Change Biogeography - International Biogeographical Society Meeting: 20-24 March 2018, Evora, Portugal, Evora, Portugal. |
Cornet, L., Meunier, L., Van Vlierberghe, M., Léonard, R., Durieu, B., Lara, Y., Misztak, A., Sirjacobs, D., Javaux, E., Philippe, H., Wilmotte, A., & Baurain, D. (2018). Consensus assessment of the contamination level of publicly available cyanobacterial genomes. PLoS ONE, 13 (7), 0200323. doi:10.1371/journal.pone.0200323 |
Léonard, R., Sirjacobs, D., Sauvage, E., Kerff, F., & Baurain, D. (11 May 2017). ToRQuEMaDA: Tool for retrieving queried eubacteria, metadata and dereplicating assemblie [Poster presentation]. PhD Student Day 2017, Liège, Belgium. |
Sirjacobs, D., Aguera Garcia, A., Pelaprat, C., Leduc, M., Volpon, A., Danis, B., Gobert, S., & Lejeune, P. (2017). Caractérisation des habitats et communautés benthiques en baie de Calvi (Corse) : évaluation du potentiel de l’imagerie ROV. In T. Bajjouk, M. Mahier, S. Piel, J. Populus, ... J. Tourolle, Carhambar, 2017. Cartographie des habitats marins benthiques : de l’acquisition à la restitution. Actes de colloque. Édition Ifremer‐AFB. 161 p. Brest, France: Édition Ifremer‐AFB. |
Léonard, R., Baurain, D., Kerff, F., Sauvage, E., & Sirjacobs, D. (07 December 2015). On the LZ distance for dereplicating redundant prokaryotic genomes [Poster presentation]. 10th Benelux Bioinformatics Conference, Antwerp, Belgium. |
Richir, J., Abadie, A., Binard, M., Biondo, R., Boissery, P., Borges, A., Cimiterra, N., Collignon, A., Champenois, W., Donnay, A., Fréjefond, C., Gobert, S., Goffart, A., Hecq, J.-H., Lepoint, G., Pelaprat, C., Pere, A., Sirjacobs, D., Thomé, J.-P., ... Lejeune, P. (2015). STARECAPMED (STAtion of Reference and rEsearch on Change of local and global Anthropogenic Pressures on Mediterranean Ecosystems Drifts) - Année 2014. Rapport de recherches. Calvi, France: STARESO SAS. https://orbi.uliege.be/handle/2268/187710 |
Troupin, C., Ouberdous, M., Barth, A., Alvera Azcarate, A., Sirjacobs, D., & Beckers, J.-M. (15 November 2012). Generation of analysis and consistent error fields using the Data Interpolating Variational Analysis (Diva) [Poster presentation]. II Encuentro de la Oceanografía Física Española, Madrid, Spain. |
Troupin, C., Barth, A., Sirjacobs, D., Ouberdous, M., Brankart, J.-M., Brasseur, P., Rixen, M., Alvera Azcarate, A., Belounis, M., Capet, A., Lenartz, F., Toussaint, M.-E., & Beckers, J.-M. (August 2012). Generation of analysis and consistent error fields using the Data Interpolating Variational Analysis (Diva). Ocean Modelling, 52-53, 90-101. doi:10.1016/j.ocemod.2012.05.002 |
Troupin, C., Ouberdous, M., Barth, A., Alvera Azcarate, A., Sirjacobs, D., & Beckers, J.-M. (24 April 2012). Comparison between Optimal Interpolation (OI) and Data-Interpolating Variational Analysis (Diva) for the generation of analysis and error gridded fields [Poster presentation]. European Geosciences Union General Assembly 2012, Vienna, Austria. |
Troupin, C., Barth, A., Alvera Azcarate, A., Sirjacobs, D., & Beckers, J.-M. (24 February 2012). Viewing through the clouds in satellite images [Poster presentation]. VLIZ Young Marine Scientists' Day, Brugge, Belgium. |
Alvera Azcarate, A., Sirjacobs, D., Barth, A., & Beckers, J.-M. (2012). Outlier detection in satellite data using spatial coherence. Remote Sensing of Environment, 119, 84-91. doi:10.1016/j.rse.2011.12.009 |
Sirjacobs, D. (2011). Study of the ecology, population structure and dynamic of the macroalgae Codium elisabethae in Faial (Azores) with underwater visible imagery [Doctoral thesis, ULiège - Université de Liège]. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/107681 |
Troupin, C., Sirjacobs, D., Rixen, M., Brasseur, P., Brankart, J.-M., Alvera Azcarate, A., Barth, A., Capet, A., Ouberdous, M., Lenartz, F., Toussaint, M.-E., & Beckers, J.-M. (April 2011). Advanced Data Interpolating Variational Analysis. Application to climatological data [Poster presentation]. European Geosciences Union General Assembly 2011, Vienna, Austria. |
Troupin, C., Sirjacobs, D., Rixen, M., Brasseur, P., Brankart, J.-M., Barth, A., Alvera Azcarate, A., Capet, A., Ouberdous, M., Lenartz, F., Toussaint, M.-E., & Beckers, J.-M. (21 March 2011). Advanced Data Interpolating Variational Analysis. Application to climatological data [Poster presentation]. IODE 50th Anniversary International Conference, Liège, Belgium. |
Alvera Azcarate, A., Barth, A., Sirjacobs, D., Lenartz, F., & Beckers, J.-M. (2011). Data Interpolating Empirical Orthogonal Functions (DINEOF): a tool for geophysical data analyses. Mediterranean Marine Science, 12 (3), 5-11. doi:10.12681/mms.64 |
Sirjacobs, D., Alvera Azcarate, A., Barth, A., Lacroix, G., Park, Y., Nechad, B., Ruddick, K., & Beckers, J.-M. (January 2011). Cloud filling of ocean colour and sea surface temperature remote sensing products over the Southern North Sea by the Data Interpolating Empirical Orthogonal Functions methodology. Journal of Sea Research, 65 (1), 114-130. doi:10.1016/j.seares.2010.08.002 |
Troupin, C., Beckers, J.-M., Sangrà, P., Alvera Azcarate, A., Barth, A., Machín, F., Mason, E., Lenartz, F., Ouberdous, M., & Sirjacobs, D. (26 April 2010). High-resolution measurements and modelling of the Cape Ghir upwelling filament during the CAIBEX cruise [Paper presentation]. 42° International Liège Colloquium on Ocean Dynamics, Liège, Belgium. |
Troupin, C., Lenartz, F., Sirjacobs, D., Alvera Azcarate, A., Barth, A., Ouberdous, M., & Beckers, J.-M. (20 April 2009). Evolution of Western Mediterranean Sea Surface Temperature between 1985 and 2005 [Paper presentation]. EGU General Assembly, Vienna, Austria. |
Alvera Azcarate, A., Barth, A., Sirjacobs, D., & Beckers, J.-M. (2009). Enhancing temporal correlations in EOF expansions for the reconstruction of missing data using DINEOF. Ocean Science, 5 (4), 475-485. doi:10.5194/os-5-475-2009 |
Sirjacobs, D., Lenartz, F., Troupin, C., Alvera Azcarate, A., Barth, A., Ouberdous, M., Vandenbulcke, L., & Beckers, J.-M. (January 2009). Weekly satellite sea surface temperature around Corsica, a DINEOF analysis of AVHRR data (1998), foreseeing comparison with interpolated and modelled fields [Poster presentation]. ASLO aquatic sciences meeting 2009, Nice, France. |
Troupin, C., Ouberdous, M., Lenartz, F., Sirjacobs, D., & Beckers, J.-M. (16 October 2008). Using Diva on large datasets: applications and tips [Paper presentation]. Diva Workshop, Calvi, France. |
Troupin, C., Lenartz, F., & Sirjacobs, D. (30 September 2008). The Western Mediterranean sea surface temperature dynamics seen through complementary in situ, satellite and modeling approaches over the 1985-1995 period [Paper presentation]. 3rd MedCLIVAR-ESF Workshop, Rhodes, Greece. |
Troupin, C., Ouberdous, M., Machín, F., Rixen, M., Sirjacobs, D., & Beckers, J.-M. (13 April 2008). Three-dimensional analysis of oceanographic data with the software DIVA [Poster presentation]. EGU General Assembly, Vienna, Austria. |
Troupin, C., Machín, F., Ouberdous, M., Rixen, M., Sirjacobs, D., & Beckers, J.-M. (03 April 2008). DIVA-4.2.1: presentation of the new features [Poster presentation]. SeaDataNet 2nd Plenary Meeting, Athens, Greece. |
Troupin, C., Ouberdous, M., Rixen, M., Sirjacobs, D., & Beckers, J.-M. (31 March 2008). Implementation of hydrostatic constraint in the software DIVA: Theory and applications [Poster presentation]. International Conference On Marine Data and Information Systems (IMDIS), Athens, Greece. |
Destain, M.-F., Sirjacobs, D., Hanquet, B., Leemans, V., & Verbrugge, J.-C. (2008). On-the-go georeferenced measurements of soil mechanical strength and differenciation of soil structure. Geophysical Research Abstracts, 2008-A-07400. |
Troupin, C., Ouberdous, M., Rixen, M., Sirjacobs, D., & Beckers, J.-M. (2008). Three-dimensional analysis of oceanographic data with the software DIVA. Geophysical Research Abstracts, 2008-A-10284. |
Troupin, C., Rixen, M., Sirjacobs, D., & Beckers, J.-M. (19 May 2007). DIVA: a Data Analysis Software with Generalized-Cross Validation and Quality Control [Poster presentation]. SeaDataNet 1st Plenary Meeting, Trieste, Italy. |
Troupin, C., Sirjacobs, D., & Beckers, J.-M. (13 November 2006). DIVA Graphical User Interface [Paper presentation]. DIVA Workshop, Liège, Belgium. |
Sirjacobs, D., Tempera, F., Cardigos, F., Gobert, S., Lepoint, G., Santos, R., & Bouquegneau, J.-M. (March 2004). Study of the structure, distribution and dynamics of Codium elisabethae populations in the Azorian reef ecosystem, use of submarine image analysis [Poster presentation]. VLIZ Young Scientists' Day, Brugges, Belgium. |
Sirjacobs, D., Grégoire, M., Delhez, E., & Nihoul, J. (April 2003). Influence of the Aral Sea negative water balance on its seasonal circulation and ventilation patterns : use of a 3D hydrodynamic model. Geophysical Research Abstracts, 5 (09052), 2003_5_09052. |
Sirjacobs, D. (2002). Matlab designed Image analysis software for detection of Codium elisabethae and calculation of population statistics. Summer training work realised within the MAROV Project (Mapping of Marine Habitats of the Azores using Robotic Ocean Vehicles). https://orbi.uliege.be/handle/2268/75007 |
Sirjacobs, D., Grégoire, M., Delhez, E., & Nihoul, J. (2001). Synthesis of water balance data and simulation of the shrinking process of the Aral Sea [Paper presentation]. Conference on technical and economical aspects of the problems of rational water resources use in the Aral Sea basin, Tashkent, Uzbekistan. |
Sirjacobs, D., & Destain, M.-F. (2000). A Soil Mechanical Resistance Sensor For On-Line Application In Precision Agriculture: Soil Strength Mapping And Correlation With Soil Physical Properties. In Proceedings of the 15th Conference of the International Soil Research Organization (I.S.T.R.O.). |
Sirjacobs, D., & Destain, M.-F. (2000). La résistance mécanique du sol: mesure en continu et cartographie pour l’agriculture de précision. In P. Zwaenepoel (Ed.), Agriculture de Précision - Avancées de la recherche technologique et industrielle (pp. 117-127; 432). France: Educagri. |
Sirjacobs, D., Hamza, E., & Destain, M.-F. (July 1999). A soil mechanical resistance sensor for on-line application in presicion agriculture [Poster presentation]. 2nd European Conference on Precision Agriculture, Odense, Denmark. |