Publications and communications of Bernard Taminiau

Sadek, A., Taminiau, B., Daube, G., Sapountzis, P., Chaucheyras-Durand, F., Castex, M., Coucheney, F., & Drider, D. (31 December 2023). Impact of Dietary Regime and Seasonality on Hindgut's Mycobiota Diversity in Dairy Cows. Microorganisms, 12 (1), 84. doi:10.3390/microorganisms12010084

Minutillo, R.* , Pirard, B.* , Fatihi, A., Cavaiuolo, M., Lefebvre, D., Gerard, A., Taminiau, B., Nia, Y., Hennekinne, J.-A., Daube, G., & Clinquart, A. (03 November 2023). The Enterotoxin Gene Profiles and Enterotoxin Production of Staphylococcus aureus Strains Isolated from Artisanal Cheeses in Belgium. Foods, 12 (21), 4019. doi:10.3390/foods12214019

Martinez, E., Crevecoeur, S., THIRION, C., GRANDJEAN, J., Fall, P. A., Hayette, M.-P., Moutschen, M., Taminiau, B., Louis, E., & Daube, G. (10 October 2023). Gut Microbiota Associated with Clostridioides difficile Carriage in Three Clinical Groups (Inflammatory Bowel Disease, C. difficile Infection and Healthcare Workers) in Hospital Field. Microorganisms, 11 (10), 2527. doi:10.3390/microorganisms11102527

Navez, M., Antoine, C., Laforêt, F., Thiry, D., Delcenserie, V., & Taminiau, B. (September 2023). In Vitro Effect on Piglet Gut Microbiota and In Vivo Assessment of Newly Isolated Bacteriophages against F18 Enterotoxigenic Escherichia coli (ETEC) [Poster presentation]. BSVoM, Liège, Belgium.

Jabri, H., Krings, S., Fall, P. A., Baurain, D., Daube, G., & Taminiau, B. (10 August 2023). Microbiota Profiling on Veterinary Faculty Restroom Surfaces and Source Tracking. Microorganisms, 11 (8), 2053. doi:10.3390/microorganisms11082053

Antoine, C., Laforêt, F., Goya-Jorge, E., Gonza Quito, I. E., Lebrun, S., Douny, C., Duprez, J.-N., Fall, A., Taminiau, B., Scippo, M.-L., Daube, G., Thiry, D.* , & Delcenserie, V.*. (24 June 2023). Phage Targeting Neonatal Meningitis E. coli K1 In Vitro in the Intestinal Microbiota of Pregnant Donors and Impact on Bacterial Populations. International Journal of Molecular Sciences, 24 (13), 10580. doi:10.3390/ijms241310580

Navez, M., Antoine, C., Laforêt, F., Goya-Jorge, E., Douny, C., Scippo, M.-L., Vermeersch, M., Duprez, J.-N., Daube, G., Mainil, J., Taminiau, B., Delcenserie, V., & Thiry, D. (25 April 2023). In Vitro Effect on Piglet Gut Microbiota and In Vivo Assessment of Newly Isolated Bacteriophages against F18 Enterotoxigenic Escherichia coli (ETEC). Viruses, 15 (5), 1053. doi:10.3390/v15051053

Vangrinsven, E., Fastrès, A., Taminiau, B., Billen, F., Daube, G., & Clercx, C. (15 April 2023). Assessment of the nasal microbiota in dogs with fungal rhinitis before and after cure and in dogs with chronic idiopathic rhinitis. BMC Microbiology, 23 (1), 104. doi:10.1186/s12866-023-02828-7

Imazaki, P. H., Taminiau, B., Fall, P. A., Elansary, M., Douny, C., Scippo, M.-L., Daube, G., & Clinquart, A. (29 March 2023). Oxidative Stability and Microbial Ecology of Fresh Beef with Extremely Long Shelf-Life. Journal of Food Processing and Preservation, 2023, 1-13. doi:10.1155/2023/5319266

Caballano-Infantes, E., Ho-Plágaro, A., López-Gómez, C., Martín-Reyes, F., Rodríguez-Pacheco, F., Taminiau, B., Daube, G., Garrido-Sánchez, L., Alcaín-Martínez, G., Andrade, R. J., García-Cortés, M., Lucena, M. I., García-Fuentes, E., & Rodriguez Diaz, C. (27 March 2023). Membrane Vesicles of Toxigenic Clostridioides difficile Affect the Metabolism of Liver HepG2 Cells. Antioxidants, 12 (4), 818. doi:10.3390/antiox12040818

Léonard, C., Picavet, P., Fontaine, J., Clercx, C., Taminiau, B., Daube, G., & Claeys, S. (11 March 2023). The Middle Ear Microbiota in Healthy Dogs Is Similar to That of the External Ear Canal. Veterinary Sciences, 10 (3), 216. doi:10.3390/vetsci10030216

Laforêt, F., Antoine, C., Lebrun, S., Gonza Quito, I. E., Goya-Jorge, E., Douny, C., Duprez, J.-N., Scippo, M.-L., Taminiau, B., Daube, G., Fall, A., Thiry, D.* , & Delcenserie, V.*. (10 March 2023). Impact Assessment of vB_KpnP_K1-ULIP33 Bacteriophage on the Human Gut Microbiota Using a Dynamic In Vitro Model. Viruses, 15 (3), 719. doi:10.3390/v15030719

Rodriguez Diaz, C., Martín-Reyes, F., Taminiau, B., Ho-Plágaro, A., Camargo, R., Fernandez-Garcia, F., Pinazo-Bandera, J., Toro-Ortiz, J. P., Gonzalo, M., López-Gómez, C., Rodríguez-Pacheco, F., Rodríguez de Los Ríos, D., Daube, G., Alcain-Martinez, G., & García-Fuentes, E. (04 March 2023). The Metagenomic Composition and Effects of Fecal-Microbe-Derived Extracellular Vesicles on Intestinal Permeability Depend on the Patient's Disease. International Journal of Molecular Sciences, 24 (5), 4971. doi:10.3390/ijms24054971

Djebala, S., Coria, E., Munaut, F., Gille, L., Eppe, J., Moula, N., Taminiau, B., Daube, G., & Bossaert, P. (2023). Bacterial Contamination of the Surgical Site at the Time of Elective Caesarean Section in Belgian Blue Cows-Part 2: Identified by 16Sr DNA Amplicon Sequencing. Veterinary Sciences. doi:10.3390/vetsci10020094

Loublier, C., Taminiau, B., Heinen, J., Lecoq, L., Amory, H., Daube, G., & Cesarini, C. (17 January 2023). Evaluation of Bacterial Composition and Viability of Equine Feces after Processing for Transplantation. Microorganisms, 11 (2), 231. doi:10.3390/microorganisms11020231

Djebala, S., Coria, E., Munaut, F., Gille, L., Eppe, J., Moula, N., Taminiau, B., Daube, G., & Bossaert, P. (09 December 2022). Bacterial Contamination of the Surgical Site at the Time of Elective Caesarean Section in Belgian Blue Cows-Part 1: Identified by Bacterial Culture. Veterinary Sciences, 9 (12). doi:10.3390/vetsci9120687

Neyrinck, A., Rodriguez, J., Taminiau, B., Herpin, F., Cani, P., Daube, G., Bindels, L., & Delzenne, N. (24 November 2022). Constipation Mitigation by Rhubarb Extract in Middle-Aged Adults Is Linked to Gut Microbiome Modulation: A Double-Blind Randomized Placebo-Controlled Trial. International Journal of Molecular Sciences, 23 (23), 14685. doi:10.3390/ijms232314685

Balzani, L., Orban, P., Taminiau, B., Daube, G., & Brouyère, S. (14 September 2022). A multi-tracer approach for the identification of different pollution sources in sub-urban groundwater catchments [Poster presentation]. International Interdisciplinary Conference Land Use and Water Quality - LuWQ2022, Maastricht, Netherlands.

Martinez, E., Rodriguez, C., Crevecoeur, S., Lebrun, S., Delcenserie, V., Taminiau, B., & Daube, G. (2022). Impact of environmental conditions and gut microbiota on the in vitro germination and growth of Clostridioides difficile. FEMS Microbiology Letters. doi:10.1093/femsle/fnac087

Léonard, C., Thiry, D., Taminiau, B., Daube, G., & Fontaine, J. (18 July 2022). External Ear Canal Evaluation in Dogs with Chronic Suppurative Otitis Externa: Comparison of Direct Cytology, Bacterial Culture and 16S Amplicon Profiling. Veterinary Sciences, 9 (7), 366. doi:10.3390/vetsci9070366

Martinez, E., Taminiau, B., Rodriguez, C., & Daube, G. (08 July 2022). Gut Microbiota Composition Associated with Clostridioides difficile Colonization and Infection. Pathogens, 11 (7), 781. doi:10.3390/pathogens11070781

Rodriguez Diaz, C., Taminiau, B., García-García, A., Cueto, A., Robles-Díaz, M., Ortega-Alonso, A., Martín-Reyes, F., Daube, G., Sanabria-Cabrera, J., Jimenez-Perez, M., Isabel Lucena, M., Andrade, R. J., García-Fuentes, E., & García-Cortes, M. (2022). Microbiota diversity in nonalcoholic fatty liver disease and in drug-induced liver injury. Pharmacological Research, 106348. doi:10.1016/j.phrs.2022.106348

Goya-Jorge, E., Gonza Quito, I. E., Bondue, P., Douny, C., Taminiau, B., Daube, G., Scippo, M.-L., & Delcenserie, V. (30 June 2022). Human Adult Microbiota in a Static Colon Model: AhR Transcriptional Activity at the Crossroads of Host–Microbe Interaction. Foods, 11 (13), 1946. doi:10.3390/foods11131946

Boumenir, M., Hornick, J.-L., Taminiau, B., Daube, G., Brotcorne, F., Iguer-Ouada, M., & Moula, N. (2022). La première analyse du microbiote intestinal du macaque de Barbarie révèle des différences entre un groupe sauvage et un groupe approvisionné dans la région de Bejaia, Algérie. In Book of abstracts- OHID 2022 (pp. 23). Lille, France: Université de Lille.

Gallait, C., Taminiau, B., Crevecoeur, S., Gerard, A., Daube, G.* , & Sindic, M.*. (2022). Study of a new strain of Fusobacterium which could inhibit L. monocytogenes in Herve cheese. In OHID Book of Abracts (pp. 47). Polytech Lille, Villeneuve d’Ascq, France.

Detilleux, J., Moula, N., Dawans, E., Taminiau, B., Daube, G., & Leroy, P. (March 2022). A Probabilistic Structural Equation Model to Evaluate Links between Gut Microbiota and Body Weights of Chicken Fed or Not Fed Insect Larvae. Biology, 11 (3), 357. doi:10.3390/biology11030357

Pouille, C. L., Ouaza, S., Roels, E., Behra, J., Tourret, M., Molinié, R., Fontaine, J.-X., Mathiron, D., Gagneul, D., Taminiau, B., Daube, G., Ravallec, R., Rambaud, C., Hilbert, J.-L., Cudennec, B., & Lucau-Danila, A. (March 2022). Chicory: Understanding the Effects and Effectors of This Functional Food. Nutrients, 14 (5), 957. doi:10.3390/nu14050957

Lebeau, A.* , Bruyère, D.* , RONCARATI, P., Peixoto, P., Hervouet, E., COBRAIVILLE, G., Taminiau, B., Masson, M., Gallego, C., Mazzucchelli, G., Smargiasso, N., Fleron, M., Baiwir, D., Hendrick, E., Pilard, C., Lerho, T., Reynders, C., Ancion, M., GREIMERS, R., ... Herfs, M. (28 February 2022). HPV infection alters vaginal microbiome through down-regulating host mucosal innate peptides used by Lactobacilli as amino acid sources. Nature Communications, 13 (1), 1076. doi:10.1038/s41467-022-28724-8

Boumenir, M., Hornick, J.-L., Taminiau, B., Daube, G., Brotcorne, F., Iguer-Ouada, & Moula, N. (2022). First Descriptive Analysis of the Faecal Microbiota ofWild and Anthropized Barbary Macaques (Macaca sylvanus) in the Region of Bejaia, Northeast Algeria. Biology. doi:10.3390/biology11020187

Navez, M., Antoine, C., Laforêt, F., Duprez, J.-N., Delcenserie, V., Taminiau, B., & Thiry, D. (2022). Evaluation de bactériophages actifs contre des souches d’Escherichia coli entérotoxinogènes responsables de diarrhées chez les porcelets au sevrage [Paper presentation]. CIFMIA.

Martinez, E., Doumont, L., Taminiau, B., & Daube, G. (19 November 2021). Clostridioides difficile virulence genes expression in an insert plate model [Poster presentation]. Farah Day.

Coton, M., Deniel, F., Mounier, J., Joubrel, R., Robieu, E., Pawtowski, A., Jeuge, S., Taminiau, B., Daube, G., Coton, E., & Frémaux, B. (November 2021). Microbial Ecology of French Dry Fermented Sausages and Mycotoxin Risk Evaluation During Storage. Frontiers in Microbiology, 12. doi:10.3389/fmicb.2021.737140

Balzani, L., Orban, P., Collier, L., Wildemeersch, S., Taminiau, B., Deliège, J.-F., Everbecq, E., & Brouyère, S. (September 2021). A new methodological approach for the protection of peri-urban groundwater catchments [Poster presentation]. 48th IAH CONGRESS (BRUXELLES), Bruxelles, Belgium.

Rodriguez Diaz, C., Taminiau, B., Garcia-Fuentes, E., Korsak Koulagenko, N., & Daube, G. (18 July 2021). Presence of Clostridioides difficile in fresh mushrooms at retail stores [Poster presentation]. IAFP 2021 Annual Meeting, Phoenix, United States.

Rodriguez Diaz, C., Taminiau, B., Korsak Koulagenko, N., & Daube, G. (18 July 2021). Organic farming practices versus conventional production: associated pathogens and food safety concerns in a sustainable development [Poster presentation]. IAFP 2021 Annual Meeting, Phoenix, United States.

Gerard, A., El-Hajjaji, S., Burteau, S., Fall, P. A., Pirard, B., Taminiau, B., Daube, G., & Sindic, M. (13 June 2021). Study of the microbial diversity of a panel of Belgian artisanal cheeses associated with challenge studies for Listeria monocytogenes. Food Microbiology, 100, 103861. doi:10.1016/j.fm.2021.103861

Cirillo, A., Huart, J., Taminiau, B., Descy, J., Saint-Remy, A., Daube, G., KRZESINSKI, J.-M., MELIN, P., JOURET, F., & De Tullio, P. (26 May 2021). Human Stool Metabolome Differs upon 24 h Blood Pressure Levels and Blood Pressure Dipping Status: A Prospective Longitudinal Study [Poster presentation]. CIRM day.

Cairo, P. L. G., Nogueira, S. S. C., Altino, V. S., Vandenheede, M., Schroyen, M., Taminiau, B., Daube, G., Gross, E., Bindelle, J., & Nogueira-Filho, S. L. G. (2021). Individual differences in behaviour and gut bacteria are associated in collared peccary (Mammalia, Tayassuidae). Journal of Applied Microbiology. doi:10.1111/jam.15133

HUART, J.* , Cirillo, A.* , Taminiau, B., DESCY, J., SAINT-REMY, A., Daube, G., KRZESINSKI, J.-M., MELIN, P., De Tullio, P.* , & JOURET, F.*. (29 April 2021). Human Stool Metabolome Differs upon 24 h Blood Pressure Levels and Blood Pressure Dipping Status: A Prospective Longitudinal Study. Metabolites, 11 (5), 282. doi:10.3390/metabo11050282

Rodriguez Diaz, C., Mith, H., Taminiau, B., Korsak Koulagenko, N., Clinquart, A., & Daube, G. (27 April 2021). In vitro study of antimicrobial activity of essential oils and their components against the main Clostridioides difficile PCR-ribotypes isolated in Belgium [Poster presentation]. IAFP European Congress.

Pirard, B., Crevecoeur, S., Fall, P., Lausberg, P., Taminiau, B., & Daube, G. (2021). Potential resident bacterial microbiota in udder tissues of culled cows sampled in abattoir. Research in Veterinary Science. doi:10.1016/j.rvsc.2021.03.012

Wimmer-Scherr, C., Taminiau, B., Renaud, B., van loon, G., Palmers, K., Votion, D., Amory, H., Daube, G., & Cesarini Latorre, C. (15 February 2021). Comparison of Fecal Microbiota of Horses Suffering from Atypical Myopathy and Healthy Co-Grazers. Animals, 11 (506). doi:10.3390/ani11020506

Abekhti, A., Taminiau, B., Nezer, C., Hiligsman, S., Mabrouk, K., & Daube, G. (2021). Metabarcoding analysis and fermentation performance of the dominant fungal microbiota associated with the Algerian traditional date product "Btana". International microbiology : the official journal of the Spanish Society for Microbiology. doi:10.1007/s10123-021-00166-0

Bendjeddou, K., Hamma-Faradji, S., Meddour, A. A., Belguesmia, Y., Cudennec, B., Bendali, F., Daube, G., Taminiau, B., & Drider, D. (2021). Gut microbiota, body weight and histopathological examinations in experimental infection by methicillin-resistant Staphylococcus aureus: antibiotic versus bacteriocin. Beneficial Microbes, 12 (3), 295-305. doi:10.3920/BM2020.0155

El Otmani, S., Chebli, Y., Taminiau, B., Chentouf, M., Hornick, J.-L., & Cabaraux, J.-F. (2021). Effect of olive cake and cactus cladodes incorporation in Goat kid's diet on the rumen microbial community profile and meat fatty acid composition. Biology, (10). doi:10.3390/biology10121237

Neckermann, K., Claus, G., De Baere, S., Antonissen, G., Lebrun, S., Gemmi, C., Taminiau, B., Douny, C., Scippo, M.-L., Schatzmayr, D., Gathumbi, J., Uhlig, S., Croubels, S., & Delcenserie, V. (2021). The efficacy and effect on gut microbiota of an aflatoxin binder and a fumonisin esterase using an in vitro simulator of the human intestinal microbial ecosystem (SHIME®). Food Research International, 145, 110395. doi:10.1016/j.foodres.2021.110395

Neyrinck, A., Rodriguez, J., Taminiau, B., Amadieu, C., Herpin, F., Allaert, F. A., Cani, P., Daube, G., Bindels, L., & Delzenne, N. (2021). Improvement of gastrointestinal discomfort and inflammatory status by a synbiotic in middle-aged adults: a double-blind randomized placebo-controlled trial. Scientific Reports, 11, 2627. doi:10.1038/s41598-020-80947-1

Rodriguez Diaz, C., Mith, H., Taminiau, B., Bouchafa, L., Van Broeck, J., Soumillon, K., Ngyuvula, E., Garcia-Fuentes, E., Korsak Koulagenko, N., Delmée, M., & Daube, G. (2021). First isolation of Clostrioides difficile from smoked and dried freshwater fish in Cambodia. Food Control. doi:10.1016/j.foodcont.2021.107895

Vangrinsven, E., Fastrès, A., Taminiau, B., Billen, F., Daube, G., & Clercx, C. (2021). Variations in facial conformation are associated with differences in nasal microbiota in healthy dogs. BMC Veterinary Research, 17 (1), 100. doi:10.1186/s12917-021-03055-w

Zhang, H., Majdeddin, M., Gaublomme, D., Taminiau, B., Boone, M., Elewaut, D., Daube, G., Josipovic, I., Zhang, K., & Michiels, J. (2021). 25-hydroxycholecalciferol reverses heat induced alterations in bone quality in finisher broilers associated with effects on intestinal integrity and inflammation. Journal of Animal Science and Biotechnology, 12 (1), 104. doi:10.1186/s40104-021-00627-6

Delhalle, L., Taminiau, B., Fall, A., Burteau, S., Fastrez, S., Ballesteros, M., & Daube, G. (2020). Tracing back food spoiling bacteria during enzymatic cleaning with 16S rDNA metagenetic. In Journal off Food protection -Protecting the gobal supply (International Association for Food protection, pp. 35).

Rodriguez Diaz, C., Mith, H., Taminiau, B., Bouchafa, L., Van Broeck, J., Soumission, K., Ngyuvula, E., Garcia-Fuentes, E., Korsak Koulagenko, N., Delmée, M., & Daube, G. (28 October 2020). First isolation of Clostridioides difficile from smoked and dried freshwater fish in Cambodia [Poster presentation]. FEMS Online Conference on Microbiology, Belgrade, Serbia.

Rodriguez Diaz, C., Taminiau, B., Martin-Reyers, F., Ho-Plagaro, A., Blanc, P., Alcain-Martinez, G., Garcia-Fuentes, E., & Daube, G. (28 October 2020). Metagenetic approach to explore the gut microbiota and their secreted extracellular vesicles in diarrheic and healthy patients [Poster presentation]. FEMS Online Conference on Microbiology 2020, Belgrade, Serbia.

Rodriguez Diaz, C., Mith, H., Taminiau, B., Bouchafa, L., Van Broeck, J., Soumission, K., Ngyuvula, E., Garcia-Fuentes, E., Korsak Koulagenko, N., Delmée, M., & Daube, G. (21 October 2020). First isolation of Clostridioides difficile from smoked and dried freshwater fish in Cambodia [Poster presentation]. ICDS Microbiology 2020 Online, Fès, Morocco.

Rodriguez Diaz, C., Taminiau, B., Martin-Reyes, F., Ho-Plagaro, A., Blanc, P., Alcain-Martinez, G., Garcia-Fuentes, E., & Daube, G. (21 October 2020). Metagenetic approach to explore the gut microbiota and their secreted extracellular vesicles in diarrheic and healthy patients [Poster presentation]. ICDS Microbiology 2020 Online, Fès, Morocco.

Neyrinck, A. M., Rodriguez, J., Taminiau, B., Daube, G., Cani, P., Bindels, L., & Delzenne, N. M. (September 2020). Intérêt des prébiotiques dans les désordres métaboliques associés au surpoids et au vieillissement [Poster presentation]. Congrès annuel de la Société francophone du diabète, Bruxelles, Belgium.

Delhalle, L., Taminiau, B., Fastrez, S., Fall, A., Ballesteros, M., Burteau, S., & Daube, G. (11 August 2020). Evaluation of enzymatic cleaning on food processing installations and food products bacterial microflora. Frontiers in Microbiology, 11, 1827. doi:10.3389/fmicb.2020.01827

Nikolenko, O., Morana, C., Taminiau, B., Borges, A., Robert, T., Goderniaux, P., Duvivier, M., & Brouyère, S. (May 2020). Vertical interval dynamics of greenhouse gases in groundwater (Hesbaye chalk aquifer, Belgium) [Paper presentation]. EGU General Assembly. doi:10.5194

Fastrès, A., Roels, E., Vangrinsven, E., Taminiau, B., Jabri, H., Bolen, G., Merveille, A.-C., Tutunaru, A.-C., Moyse, E., Daube, G., & Clercx, C. (April 2020). Assessment of the lung microbiota in dogs: influence of the type of breed, living conditions and canine idiopathic pulmonary fibrosis. BMC Microbiology, 20 (84), 1-13. doi:10.1186/s12866-020-01784-w

Gerard, A., Ô, Q. M., Taminiau, B., Daube, G., & Sindic, M. (31 January 2020). Characterization of the microbial diversity of Belgian artisanal cheese using metagenetics [Poster presentation]. 25th National Symposium on Applied Biological Sciences.

Cauchie, E., Delhalle, L., Baré, G., Tahiri, A., Taminiau, B., Korsak Koulagenko, N., Burteau, S., Fall, P. A., Farnir, F., & Daube, G. (2020). Modelling the growth and interaction between Brochothrix thermosphacta, Pseudomonas spp. and Leuconostoc gelidum in minced pork meat samples. Frontiers in Microbiology. doi:10.3389/fmicb.2020.00639

Cauchie, E., Delhalle, L., Taminiau, B., Tahiri, A., Korsak Koulagenko, N., Burteau, S., Fall, A. P., Farnir, F., Baré, G., & Daube, G. (2020). Assessment of spoilage bacterial communities in food wrap and modified atmospheres-packed minced pork meat samples by 16S rDNA metagenetic analysis. Frontiers in Microbiology, 10. doi:10.3389/fmicb.2019.03074

Cerri, S., Taminiau, B., Haché-Carré de Lusancay, A., Lecoq, L., Amory, H., Daube, G., & Cesarini Latorre, C. (2020). Effect of oral administration of omeprazole on the microbiota of the gastric glandular mucosa and feces of healthy horses. Journal of Veterinary Internal Medicine, 34, 2727–2737. doi:10.1111/jvim.15937

Duthoo, E., Krings, S., Daube, G., Leroy, F., Taminiau, B., Heyndrickx, M., & DE Reu, K. (2020). Monitoring of Hygiene in Institutional Kitchens in Belgium. Journal of Food Protection, 305-314. doi:10.4315/0362-028X.JFP-19-202

Fastrès, A., Canonne-Guibert, M., Taminiau, B., Billen, F., Garigliany, M.-M., Daube, G., & Clercx, C. (2020). Analysis of the lung microbiota in dogs with Bordetella bronchiseptica infection and correlation with culture and quantitative polymerase chain reaction. BMC Veterinary Research, 51 (46), 1-12. doi:10.1186/s13567-020-00769-x

Ouarabi, L., Drider, D., Taminiau, B., Daube, G., Bendali, F., & Lucau-Danila, A. (2020). Vaginal Microbiota: Age Dynamic and Ethnic Particularities of Algerian Women. Microbial Ecology. doi:10.1007/s00248-020-01606-6

Rodriguez, C., Taminiau, B., Garcia-Fuentes, E., Daube, G., & Korsak Koulagenko, N. (2020). Listeria monocytogenes dissemination in farming and primary production: Sources, shedding and control measures. Food Control. doi:10.1016/j.foodcont.2020.107540

Rodriguez Diaz, C., Romero, E., Garrido-Sanchez, L., Alcain-Martinez, G., Andrade, R. J., Taminiau, B., Daube, G., & Garcia-Fuentes, E. (2020). Microbiota insights in Clostridium difficile infection and inflammatory bowel disease. Gut Microbes, 1-25. doi:10.1080/19490976.2020.1725220

Fastrès, A., Canonne-Guibert, M., Taminiau, B., Billen, F., Garigliany, M.-M., Daube, G., & Clercx, C. (08 November 2019). Analysis of the lung microbiota in dogs with Bordetella bronchiseptica infection and correlation with culture and quantitative polymerase chain reaction [Poster presentation]. 6th FARAH DAY, Liège, Belgium.

Fastrès, A., Taminiau, B., Vangrinsven, E., Tutunaru, A.-C., Moyse, E., Farnir, F., Daube, G., & Clercx, C. (November 2019). Effect of an antimicrobial drug on lung microbiota in healthy dogs. Heliyon, 5 (11). doi:10.1016/J.HELIYON.2019.E02802

Fastrès, A., Vangrinsven, E., Taminiau, B., Tutunaru, A.-C., Jabri, H., Daube, G., & Clercx, C. (23 October 2019). Assessment of lung microbiota in healthy dogs: impact of breed and living conditions. Journal of Veterinary Internal Medicine, 34, 361.

De Maesschalck, C., Eeckhaut, V., Maertens, L., De Lange, L., Marchal, L., Daube, G., Dewulf, J., Haesebrouck, F., Ducatelle, R., Taminiau, B., & Van Immerseel, F. (2019). Amorphous cellulose feed supplement alters the broiler caecal microbiome. Poultry Science. doi:10.3382/ps/pez090

De Witte, C., Demeyere, K., De Bruyckere, S., Taminiau, B., Daube, G., Ducatelle, R., Meyer, E., & Haesebrouck, F. (2019). Characterization of the non-glandular gastric region microbiota in Helicobacter suis-infected versus non-infected pigs identifies a potential role for Fusobacterium gastrosuis in gastric ulceration. Veterinary Research, 50 (1), 39. doi:10.1186/s13567-019-0656-9

François, A.-C., Renaud, B., Delcenserie, V., Lebrun, S., Taminiau, B., Cesarini Latorre, C., Gustin, P., & Votion, D. (2019). Modification of gut microbiota in response to the toxin of equine atypical myopathy: a preliminary study using a dynamic human intestinal simulator [Poster presentation]. 9 th European Equine Health & Nutrition Congress, Utrecht, Netherlands.

François, A.-C., Renaud, B., Delcenserie, V., Lebrun, S., Taminiau, B., Douny, C., Gustin, P., & Votion, D. (2019). The modification of microbiota after intoxication with hypoglycin A: preliminary study [Poster presentation]. 6th FARAH-Day, Liège, Belgium.

Kalala Bolokango, G., Kambashi, B., Taminiau, B., Schroyen, M., Everaert, N., Beckers, Y., Richel, A., Njeumen Lemotio, G. P., Pachikian, B., Neyrinck, A. M., Hiel, S., Rodriguez, J., Fall, P. A., Daube, G., Thissen, J.-P., Delzenne, N. M., & Bindelle, J. (2019). In vitro approach to evaluate the fermentation pattern of inulin-rich food in obese individuals. The British journal of nutrition, 1-19. doi:10.1017/S0007114519002915

Komagbe, G., Sessou, P., Dossa, F., Sossa-Minou, P., Taminiau, B., Azokpota, P., Korsak Koulagenko, N., Daube, G., & Farougou, S. (2019). Assessment of the microbiological quality of beverages sold in collective cafes on the campuses of the University of Abomey-Calavi, Benin Republic. Journal of Food safety and Hygiene, 5 (2).

Neyrinck, A. M., Catry, E., Taminiau, B., Cani, P. D., Bindels, L. B., Daube, G., Dessy, C., & Delzenne, N. M. (2019). Chitin-glucan and pomegranate polyphenols improve endothelial dysfunction. Scientific Reports, 9 (1), 14150. doi:10.1038/s41598-019-50700-4

Rodriguez, C., Bouchafa, L., Soumillion, K., Ngyuvula, E., Taminiau, B., Van Broeck, J., Delmee, M., & Daube, G. (2019). Seasonality of Clostridium difficile in the natural environment. Transboundary and Emerging Diseases. doi:10.1111/tbed.13301

Rodriguez, C., Taminiau, B., Bouchafa, L., Romijn, S., Van Broeck, J., Delmée, M., Clercx, C., & Daube, G. (2019). Clostridium difficile beyond stools: dog nasal discharge as a possible new vector of bacterial transmission. Heliyon. doi:10.1016/j.heliyon.2019.e01629

Duthoo, E., Krings, S., Daube, G., Taminiau, B., Heyndrickx, M., & De Reu, K. (October 2018). Monitoring of hygiene in institutional kitchens in Belgium [Poster presentation]. 23th conference on Food Microbiology, Bruxelles, Belgium.

Krings, S., Duthoo, E., De Reu, K., Taminiau, B., Heyndrickx, M., & Daube, G. (19 June 2018). Use of propidium monoazide followed by 16S rDNA sequencing in order to discriminate live and dead cells in surface and food samples from collective kitchens [Poster presentation]. mBIO2018 - Les microbiotes et la santé humaine, animale et environnementale: Préventions et traitements du futur, Paris, France.

Pirard, B., Crevecoeur, S., Taminiau, B., & Daube, G. (19 June 2018). Potential resident bacterial microbiota in udder tissues of culled cows sampled in abattoir [Poster presentation]. Adebiotech-MBIO 2018, Paris, France.

HUART, J., Leenders, J., Taminiau, B., DESCY, J., SAINT-REMY, A., Daube, G., KRZESINSKI, J.-M., MELIN, P., De Tullio, P., & JOURET, F. (18 May 2018). GUT MICROBIOTA AND FAECAL LEVELS OF SHORT CHAIN FATTY ACIDS DIFFER UPON BLOOD PRESSURE LEVELS IN MAN. Nephrology Dialysis Transplantation, 33 (Issue suppl_1), 368–i369. doi:10.1093/ndt/gfy104.SP069

Cauchie, E., Korsak Koulagenko, N., Ellouze, M., Delhalle, L., Taminiau, B., Papa Abdoulaye, F., & Daube, G. (2018). The use of predictive models in the context of food spoilage: the case of white pudding. In Proceedings of the First international Conference on "Innovative Food Ingredients and Food safety". Bangkok, Thailand: Asian Institute of Technology.

De Witte, C., Taminiau, B., Flahou, B., Hautekiet, V., Daube, G., Ducatelle, R., & Haesebrouck, F. (2018). In-feed bambermycin medication induces anti-inflammatory effects and prevents parietal cell loss without influencing Helicobacter suis colonization in the stomach of mice. Veterinary Research, 49 (1), 35. doi:10.1186/s13567-018-0530-1

Foure, M., Dugardin, C., Foligne, B., Hance, P., Cadalen, T., Delcourt, A., Taminiau, B., Daube, G., Ravallec, R., Cudennec, B., Hilbert, J.-L., & Lucau-Danila, A. (2018). Chicory Roots for Prebiotics and Appetite Regulation: A Pilot Study in Mice. Journal of Agricultural and Food Chemistry, 66 (25), 6439-6449. doi:10.1021/acs.jafc.8b01055

Le Bourgot, C., Ferret-Bernard, S., Apper, E., Taminiau, B., Cahu, A., Le Normand, L., Respondek, F., Le Huerou-Luron, I., & Blat, S. (2018). Perinatal short-chain fructooligosaccharides program intestinal microbiota and improve enteroinsular axis function and inflammatory status in high-fat diet-fed adult pigs. FASEB Journal, 201800108. doi:10.1096/fj.201800108R

Ly, S., Mith, H., Tarayre, C., Taminiau, B., Daube, G., Fauconnier, M.-L., & Delvigne, F. (2018). Impact of microbial composition of Cambodian traditional dried starters (Dombea) on flavor compounds of rice wine: combining amplicon sequencing with HP-SPME-GCMS. Frontiers in Microbiology. doi:10.3389/fmicb.2018.00894

Poelaert, C., Nollevaux, G., Boudry, C., Taminiau, B., Nezer, C., Daube, G., Schneider, Y.-J., Portetelle, D., Thewis, A., & Bindelle, J. (2018). Reducing agent can be omitted in the incubation medium of the batch in vitro fermentation model of the pig intestines. Animal, 12, 1154-1164. doi:10.1017/S1751731117002749

Cerri, S., Taminiau, B., Votion, D., Amory, H., Daube, G., & Cesarini Latorre, C. (02 November 2017). Comparison of faecal microbiota of horses suffering from atypical myopathy and healthy co-grazers [Poster presentation]. 10th annual congress of the European College of Equine Internal Medicine (ECEIM), Budapest, Hungary.

Krings, S., Crevecoeur, S., Rodriguez Diaz, C., Fall, P. A., Taminiau, B., & Daube, G. (22 September 2017). Comparison between swabbing devices in order to analyse the microbial flora found on surfaces of community kitchens by classical microbiology and amplicon sequencing [Poster presentation]. BSFM (Belgian Society for Food Microbiologists) - 22nd Conference on Food Microbiology, Brussels, Belgium.

Krings, S., Crevecoeur, S., Rodriguez Diaz, C., Fall, P. A., Taminiau, B., & Daube, G. (11 July 2017). Comparison between swabbing devices in order to analyze the microbial flora found on surfaces of community kitchens by classical microbiology and 16S rRNA amplicon sequencing [Poster presentation]. FEMS2017 - 7th Congress of European Microbiologists, Valencia, Spain.

Li, B., Leblois, J., Taminiau, B., Willems, L., Beckers, Y., Bindelle, J., & Everaert, N. (08 May 2017). The effect of inulin and/or wheat bran in the diet during early life on intestinal health of broiler chicks [Paper presentation]. 21st European Symposium on Poultry Nutrition (ESPN 2017).

Ceugniez, A., Taminiau, B., Coucheney, F., Philippe, J., Delcenserie, V., Daube, G., & Drider, D. (17 April 2017). Use of a metagenetic approach to monitor the bacterial microbiota of “Tomme d’Orchies” cheese during the ripening process. International Journal of Food Microbiology, 247, 65-69. doi:10.1016/j.ijfoodmicro.2016.10.034

Korsak Koulagenko, N., Taminiau, B., Hupperts, C., Delhalle, L., Nezer, C., Delcenserie, V., & Daube, G. (17 April 2017). Assessment of bacterial superficial contamination in classical or ritually slaughtered cattle using metagenetics and microbiological analysis. International Journal of Food Microbiology, 247, 79-86. doi:10.1016/j.ijfoodmicro.2016.10.013

Fakih, I.* , Thiry, D.* , Duprez, J.-N., Saulmont, M., Iguchi, A., Piérard, D., Jouant, L., Daube, G., Ogura, Y., Hayashi, T., Taminiau, B., & Mainil, J. (April 2017). Identification of Shiga toxin-producing (STEC) and enteropathogenic (EPEC) Escherichia coli in diarrhoeic calves and comparative genomics of O5 bovine and human STEC. Veterinary Microbiology, 202, 16-22. doi:10.1016/j.vetmic.2016.02.017

Abekhti, A., Dgeghati, S., Taminiau, B., Kihal, M., & Daube, G. (March 2017). Optimization of DNA extraction from the Algerian traditional date’s product “Btana”. Applied Biology in Saharan Areas, 1 (1), 23-32.

Ceugniez, A., Taminiau, B., Coucheney, F., Jacques, P., Delcenserie, V., Daube, G., & Drider, D. (2017). Fungal diversity of “Tomme d'Orchies” cheese during the ripening process as revealed by a metagenomic study. International Journal of Food Microbiology, 258, 89-93. doi:10.1016/j.ijfoodmicro.2017.07.015

Coton, M., Pawtowski, A., Taminiau, B., Burgaud, G., Deniel, F., Coulloumme-Labarthe, L., Fall, A., Daube, G., & Coton, E. (2017). Unraveling microbial ecology of industrial-scale Kombucha fermentations by metabarcoding and culture-based methods. FEMS Microbiology Ecology, 93 (5). doi:10.1093/femsec/fix048

De Witte, C., Flahou, B., Ducatelle, R., Smet, A., De Bruyne, E., Cnockaert, M., Taminiau, B., Daube, G., Vandamme, P., & Haesbrouck, F. (January 2017). Detection, isolation and characterization of Fusobacterium gastrosuis sp. nov. colonizing the stomach of pigs. Systematic and Applied Microbiology, 40 (1), 42-50. doi:10.1016/j.syapm.2016.10.001

Degrune, F., Theodorakopoulos, N., Colinet, G., Hiel, M.-P., Bodson, B., Taminiau, B., Daube, G., Vandenbol, M., & Hartmann, M. (2017). Temporal dynamics of soil microbial communities below the seedbed under two contrasting tillage regimes. Frontiers in Microbiology. doi:10.3389/fmicb.2017.01127

Iskandar, C. F., Borges, F., Taminiau, B., Daube, G., Zagorec, M., Remenant, B., Leisner, J. J., Hansen, M. A., Sorensen, S. J., Mangavel, C., Cailliez-Grimal, C., & Revol-Junelles, A.-M. (2017). Comparative Genomic Analysis Reveals Ecological Differentiation in the Genus Carnobacterium. Frontiers in Microbiology, 8, 357. doi:10.3389/fmicb.2017.00357

Neyrinck, A. M., Etxeberria, U., Taminiau, B., Daube, G., Van Hul, M., Everard, A., Cani, P. D., Bindels, L. B., & Delzenne, N. M. (2017). Rhubarb extract prevents hepatic inflammation induced by acute alcohol intake, an effect related to the modulation of the gut microbiota. Molecular Nutrition and Food Research, 61 (1), 1500899. doi:10.1002/mnfr.201500899

Neyrinck, A. M., Taminiau, B., Walgrave, H., Daube, G., Cani, P. D., Bindels, L. B., & Delzenne, N. M. (2017). Spirulina Protects against Hepatic Inflammation in Aging: An Effect Related to the Modulation of the Gut Microbiota? Nutrients, 9 (6). doi:10.3390/nu9060633

Kergourlay, G., de Barsy, J., Vassen, M., Douny, C., Taminiau, B., & Daube, G. (21 October 2016). FloPro project: Biopreservation of chilled food products using their own beneficial microbiota: the Belgian white pudding case [Poster presentation]. 3rd FARAH Day, Liège, Belgium.

Roels, E., Taminiau, B., Darnis, E., Neveu, F., Daube, G., & Clercx, C. (21 October 2016). Comparative analysis of the respiratory microbiota of healthy dogs and dogs with canine idiopathic pulmonary fibrosis [Poster presentation]. 3rd FARAH Day, Liège, Belgium.

Roels, E., Taminiau, B., Darnis, E., Neveu, F., Daube, G., & Clercx, C. (2016). Comparative analysis of the respiratory microbiota of healthy dogs and dogs with canine idiopathic pulmonary fibrosis. Journal of Veterinary Internal Medicine.

Fall, P. A., Burteau, S., Detry, E., Nezer, C., Taminiau, B., & Daube, G. (19 July 2016). Study of the microbial diversity of microbial ring trials by metagenomic analysis : Quantification of alive bacteria by exclusion of dead bacteria [Poster presentation]. FoodMicro 2016, Dublin, Ireland.

Cauchie, E., Delhalle, L., Taminiau, B., Korsak Koulagenko, N., & Daube, G. (18 July 2016). Monitoring and modelling of microbial ecosystem in Belgian white pudding: a new example for combining metagenetics and predictive microbiology [Poster presentation]. FoodMicro2016, Dublin, Ireland.

Kergourlay, G., Labrozzo, S., de Barsy, J., Vassen, M., Taminiau, B., & Daube, G. (July 2016). FLORPRO project: Selection of beneficial bacteria from chilled food products to protect them from bacterial spoilage and increase their shelf life [Poster presentation]. 25th International ICFMH Conference, Dublin, Ireland.

Mace, S., Kergourlay, G., Taminiau, B., & Daube, G. (July 2016). Metagenomic and metatranscriptomic analysis of naturally contaminated beef meat products under modified atmosphere packaging during storage [Poster presentation]. 25th International ICFMH Conference, Dublin, Ireland.

Rodriguez Diaz, C., Warszawski, N., Korsak Koulagenko, N., Taminiau, B., Van Broeck, J., Delmée, M., & Daube, G. (2016). Laboratory identification of anaerobic bacteria isolated on Clostridium difficile selective medium. Acta Microbiologica et Immunologica Hungarica. doi:10.1556/030.63.2016.2.3

Rodriguez Diaz, C., Oukbir, M., Taminiau, B., & Daube, G. (11 May 2016). Association of Targeted metagenomic analysis and classical microbiology for Clostridium difficile detection and microbial ecosystem mapping of surfaces hands and foodstuffs in a meat processing plant [Poster presentation]. IAFP's 12th European Symposium of Food Safety, Athens, Greece.

Neyrinck, A., Taminiau, B., Daube, G., Bindels, L. B., & Delzenne, N. M. (March 2016). Oral administration of a Spirulina extract protects old mice against hepatic “ammaging”. Nutrition Clinique et Metabolisme, 30 (1), 64. doi:10.1016/j.nupar.2016.01.077

Bardiau, M., Caplin, J., Detilleux, J., Graber, H., Moroni, P., Taminiau, B., & Mainil, J. (2016). Existence of two groups of Staphylococcus aureus strains isolated from bovine mastitis based on biofilm formation, intracellular survival, capsular profile and agr-typing. Veterinary Microbiology, 185, 1-6. doi:10.1016/j.vetmic.2016.01.003

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., Korsak Koulagenko, N., & Daube, G. (2016). The use of 16S rRNA gene metagenetic monitoring of refrigerated food products for understanding the kinetics of microbial subpopulations at different storage temperatures: the example of white pudding. International Journal of Food Microbiology. doi:10.1016/j.ijfoodmicro.2016.10.012

Delhalle, L., Korsak Koulagenko, N., Taminiau, B., Nezer, C., Burteau, S., Delcenserie, V., Poullet, J. B., & Daube, G. (2016). Exploring the bacterial diversity of Belgian steak tartare using metagenetics and qPCR analysis. Journal of Food Protection, 79 (2), 220-229. doi:10.4315/0362-028X.JFP-15-185

Neyrinck, A. M., Pachikian, B., Taminiau, B., Daube, G., Frederick, R., Cani, P. D., Bindels, L. B., & Delzenne, N. M. (2016). Intestinal Sucrase as a Novel Target Contributing to the Regulation of Glycemia by Prebiotics. PLoS ONE, 11 (8). doi:10.1371/journal.pone.0160488

Rodriguez Diaz, C., Fernadez, J., Van Broeck, J., Taminiau, B., Avesani, V., Boga, J. A., Vazquez, F., Delmée, M., & Daube, G. (2016). Clostridium difficile presence in Spanish and Belgian hospitals. Microbial Pathogenesis, 100, 141-148. doi:10.1016/j.micpath.2016.09.006

Rodriguez Diaz, C., Taminiau, B., Korsak Koulagenko, N., Avesani, V., Van Broeck, J., Brach, P., Delmée, M., & Daube, G. (2016). Longitudinal survey of Clostridium difficile presence and gut microbiota composition in a Belgian nursing home. BMC Microbiology, 16 (229). doi:10.1186/s12866-016-0848-7

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Delmée, M., & Daube, G. (2016). Clostridium difficile in Food and Animals: A Comprehensive Review. Advances in Experimental Medicine and Biology, 27. doi:10.1007/5584_2016_27

Rodriguez Diaz, C., Van Broeck, J., Taminiau, B., Demee, M., & Daube, G. (2016). Clostridium difficile infection: Early history, diagnosis and molecular strain typing methods. Microbial Pathogenesis, 97, 59-78. doi:10.1016/j.micpath.2016.05.018

Tanimomo, J., Delcenserie, V., Taminiau, B., Daube, G., Saint-Hubert, C., & Durieux, A. (2016). Growth and Freeze-Drying Optimization of Bifidobacterium crudilactis. Food and Nutrition Sciences, 7, 616-626.

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., & Daube, G. (02 December 2015). The 16S rDNA metagenetic monitoring of refrigerated food products for understanding the kinetics of microbial subpopulations at different storage temperatures: the example of white pudding [Poster presentation]. BAMST Symposium : Meet the Belgiam Meet Researchers, Gent, Belgium.

Degrune, F., Theodorakopoulos, N., Dufrêne, M., Taminiau, B., Colinet, G., Bodson, B., Hiel, M.-P., Daube, G., & Vandenbol, M. (01 December 2015). No favorable effect of reduced tillage on microbial communities in a silty loam soil (Belgium) [Poster presentation]. Ecology of soil microorganisms, Prague, Czechia.

Kergourlay, G., Taminiau, B., Daube, G., & Champomier Vergès, M.-C. (20 November 2015). Metagenomic insights into the dynamics of microbial communities in food. International Journal of Food Microbiology, 213, 31-39. doi:10.1016/j.ijfoodmicro.2015.09.010

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., & Daube, G. (16 October 2015). The 16S rDNA metagenetic monitoring of refrigerated food products for understanding the kinetics of microbial subpopulations at different storage temperatures: the example of white pudding [Poster presentation]. FARAH Day 2015, Liege, Belgium.

Fall, P. A., Burteau, S., Detry, É., Nezer, C., Delhalle, L., Taminiau, B., & Daube, G. (16 October 2015). Study of the microbial diversity of microbial ring trials by metagenomic analysis : Quantification of alive bacteria by exclusion of dead bacteria [Poster presentation]. 2nd FARAH Day, Liège, Belgium.

Korsak Koulagenko, N., Taminiau, B., Hupperts, C., Delhalle, L., Nezer, C., Burteau, S., Delcenserie, V., Ferauche, C., & Daube, G. (16 October 2015). Use of 16S rDNA metagenetics and classical microbiology to assess the bacterial superficial contamination patterns in bovines classically slaughtered or following the halal ritual [Poster presentation]. 2nd FARAH Day, Liège, Belgium.

Rodriguez Diaz, C., Taminiau, B., Van Broeack, J., Avesani, V., Delmée, M., & Daube, G. (16 October 2015). Carriage of clostridium difficile in hospital patients in spain, including molecular characterization and antimicrobial susceptibility of the isolates [Poster presentation]. 2nd FARAH Day, Liège, Belgium.

Rodriguez Diaz, C., Taminiau, B., Brévers, B., Avesani, V., Van Broeck, J., Leroux, A., Gallot, M., Bruwier, A., Amory, H., Delmée, M., & Daube, G. (16 September 2015). Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission. BMC Microbiology, 15, 181. doi:10.1186/s12866-015-0514-5

Daube, G., Taminiau, B., Nezer, C., & Delhalle, L. (02 July 2015). Metagenomic analysis of samples.

Cauchie, E., Gand, M., Kergourlay, G., Taminiau, B., Delhalle, L., Korsak Koulagenko, N., & Daube, G. (17 June 2015). The 16S rDNA metagenetic monitoring of refrigerated food products for understanding the kinetics of microbial subpopulations at different storage temperatures: the example of white pudding [Poster presentation]. CBL 20th edition (Conférence sur les bactéries lactiques), Lille, France.

Fall, P. A., Burteau, S., Detry, É., Nezer, C., Delhalle, L., Taminiau, B., & Daube, G. (17 June 2015). Étude de la diversité microbienne de poudre de lait dopée par analyse métagénomique: Quantification des bactéries vivantes par exclusion de bactéries mortes [Poster presentation]. Vingtième colloque du Club des bactéries lactiques, Lille, France.

Korsak Koulagenko, N., Taminiau, B., Hupperts, C., Delhalle, L., Nezer, C., Burteau, S., Delcenserie, V., Ferauche, C., & Daube, G. (17 June 2015). Use of 16S rDNA Metagenetics and classical Microbiology to Assess the bacterial superficial Contamination Patterns in Bovines Classically Slaughtered or following the Halal Ritual [Poster presentation]. colloque du Club des bactéries lactiques 2015 (CBL2015), Lille, France.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Avesani, V., Fernandez, J., Boga, J. A., Vazquez, F., Delmée, M., & Daube, G. (21 May 2015). CARRIAGE OF CLOSTRIDIUM DIFFICILE IN HOSPITAL PATIENTS IN SPAIN, INCLUDING MOLECULAR CHARACTERIZATION AND ANTIMICROBIAL SUSCEPTIBILITY OF THE ISOLATES [Poster presentation]. ICDS 5th International Clostridium difficile Symposium, Bled, Slovenia.

Rodriguez Diaz, C., Taminiau, B., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (21 April 2015). Heat survival of Clostridium difficile spores in ground meat during cooking process [Poster presentation]. IAFP’s 11th European Symposium on Food Safety, Cardiff, Wales, United Kingdom.

Degrune, F., Dufrêne, M., Taminiau, B., Barbieux, S., Hiel, M.-P., Daube, G., Vandenbol, M., & Nezer, C. (Other coll.). (April 2015). Soil microbial community composition changes according to the tillage practice and plant development stage [Poster presentation]. European Geosciences Union General Assembly 2015.

Rodriguez Diaz, C., Taminiau, B., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (01 April 2015). Association of classical microbiology and 16S rDNA metagenetic analysis to evaluate the presence of Clostridium difficile ina a belgian nursing home [Poster presentation]. 5th International Human Microbiome Congres, Luxembourg, Luxembourg.

Degrune, F., Dufrêne, M., Colinet, G., Massart, S., Taminiau, B., Bodson, B., Hiel, M.-P., Daube, G., Vandenbol, M., & Nezer, C. (Other coll.). (2015). A novel sub-phylum method discriminates better the impact of crop management on soil microbial community. Agronomy for Sustainable Development. doi:10.1007/s13593-015-0291-4

Rodriguez Diaz, C., Korsak Koulagenko, N., Taminiau, B., Avesani, V., van Broeck, J., Brach, P., Delmée, M., & Daube, G. (05 January 2015). Clostridium difficile from food and surface samples in a Belgian nursing home: An unlikely source of contamination. Anaerobe, 32, 87-89. doi:10.1016/j.anaerobe.2015.01.001

Abekhti, A., Taminiau, B., Kihal, M., & Daube, G. (2015). Metagenomic analysis of the bacterial microbiota linked to the traditional Algerian date product "Btana". Annals of Microbiology. doi:10.1007/s13213-015-1084-3

Bindels, L. B., Neyrinck, A. M., Salazar, N., Taminiau, B., Druart, C., Muccioli, G. G., Francois, E., Blecker, C., Richel, A., Daube, G., Mahillon, J., de Los Reyes-Gavilan, C. G., Cani, P. D., & Delzenne, N. M. (2015). Non Digestible Oligosaccharides Modulate the Gut Microbiota to Control the Development of Leukemia and Associated Cachexia in Mice. PLoS ONE, 10 (6), 0131009. doi:10.1371/journal.pone.0131009

De Maesschalck, C., Eeckhaut, V., Maertens, L., De Lange, L., Marchal, L., Nezer, C., De Baere, S., Croubels, S., Daube, G., Dewulf, J., Haesebrouck, F., Ducatelle, R., Taminiau, B., & Van Immerseel, F. (2015). The effects of xylo-oligosaccharides on performance and microbiota in broiler chickens. Applied and Environmental Microbiology. doi:10.1128/AEM.01616-15

Kinet, R., Dzaomuho-Lenieregue, P., Hiligsmann, S., Taminiau, B., Tarayre, C., Daube, G., & Delvigne, F. (2015). Flow cytometry fingerprinting for the design of a cellulolytic synthetic microbial community [Poster presentation]. 3rd European Congress of Applied Biotechnology (ECAB 2015).

Korsak Koulagenko, N., Taminiau, B., Leclercq, M., Nezer, C., Crevecoeur, S., Ferauche, C., Detry, E., Delcenserie, V., & Daube, G. (2015). Short communication: Evaluation of the microbiota of kefir samples using metagenetic analysis targeting the 16S and 26S ribosomal DNA fragments. Journal of Dairy Science, 98, 3684-3689. doi:10.3168/jds.2014-9065

Pauwels, J., Taminiau, B., Janssens, G., De Beenhouwer, M., Delhalle, L., Daube, G., & Coopman, F. (2015). Cecal drop reflects the chickens' cecal microbiome, fecal drop does not. Journal of Microbiological Methods, 117, 164-70. doi:10.1016/j.mimet.2015.08.006

Rodriguez Diaz, C., Avesani, V., Taminiau, B., Van Broeck, J., Brévers, B., Delmée, M., & Daube, G. (2015). Investigation of clostridium difficile interspecies relatedness using multilocus sequence typing, multilocus variable-number tandem-repeat analysis and antimicrobial susceptibility testing. Veterinary Journal, 206, 349-355. doi:10.1016/j.tvjl.2015.09.001

Degrune, F., Dufrêne, M., Taminiau, B., Massart, S., Barbieux, S., Bodson, B., Hiel, M.-P., Daube, G., Vandenbol, M., & Nezer, C. (Other coll.). (02 December 2014). Detecting microbial patterns in relation to soil agricultural practices and the plant development stage [Poster presentation]. The Fisrt Global Soil Biodiversity Conference, Dijon, France.

Delhalle, L., Korsak Koulagenko, N., Taminiau, B., Nezer, C., Delcenserie, V., Ferauche, C., Picolo, D., Poullet, J. B., & Daube, G. (17 October 2014). Evaluation of the microbiota of “steak tartare” with metagenomic analysis targeting 16S ribosomal DNA [Poster presentation]. FARAH Day 2014, Liège, Belgium.

Daube, G., & Taminiau, B. (18 September 2014). Les nouveaux outils génomiques, bases pour la caractérisation microbiologique des aliments [Paper presentation]. 19ème conférence de microbiologie des aliments, Bruxelles, Belgium.

Delhalle, L., Korsak Koulagenko, N., Taminiau, B., Nezer, C., Delcenserie, V., Ferauche, C., Picolo, D., Poullet, J. B., & Daube, G. (18 September 2014). Evaluation of the microbiota of “steak tartare” with metagenomic analysis targeting 16S ribosomal DNA [Poster presentation]. Dix-neuvième conférence de microbiologie des aliments, Bruxelles, Belgium.

Rodriguez Diaz, C., Taminiau, B., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (18 September 2014). Relatedness of human, animal and food Clostridium difficile strains [Poster presentation]. 19th Conference of Food Microbiology, Brussels, Belgium.

Delhalle, L., Ellouze, M., Taminiau, B., Korsak Koulagenko, N., Nezer, C., & Daube, G. (01 September 2014). Predictive microbiology combined with metagenomic analysis targeted on the 16S rDNA : A new approach for food quality [Poster presentation]. Food Micro 2014, Nantes, France.

Delhalle, L., Korsak Koulagenko, N., Taminiau, B., Nezer, C., Delcenserie, V., Ferauche, C., Picolo, D., Poullet, J. B., & Daube, G. (01 September 2014). Evaluation of the microbiota of “steak tartare” with metagenomic analysis targeting 16S ribosomal DNA [Poster presentation]. FoodMicro 2014, Nantes, France.

Guedda, I., Taminiau, B., Ferjani, A., Boukadida, J., Bertrand, S., & Daube, G. (August 2014). Antimicrobial and molecular analysis of Salmonella serovar Livingstone strains isolated from humans in Tunisia and Belgium. Journal of Infection in Developing Countries, 8, 973-980. doi:10.3855/jidc.3989

Rodriguez Diaz, C., Taminiau, B., Korsak Koulagenko, N., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (07 May 2014). Comparison and molecular characterization of animal and human Clostridium difficile strains [Poster presentation]. IAFP 2014 European Symposium on Food Safety, Budapest, Hungary.

Rodriguez Diaz, C., Korsak Koulagenko, N., Taminiau, B., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (2014). Clostridium difficile infection in elderly nursing home residents. Anaerobe, 30, 184-187. doi:10.1016/j.anaerobe.2014.08.007

Degrune, F., Taminiau, B., Dufrêne, M., Bodson, B., Hiel, M.-P., Barbieux, S., Olivier, C., Stroobants, A., Nezer, C., Daube, G., & Vandenbol, M. (11 December 2013). Impact of agricultural practices on soil microbial communities in Belgium [Poster presentation]. 2nd Thünen Symposium on Soil Metagenomics, Braunschweig, Germany.

Didimo Imazaki, P. H., Tahiri, A., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (10 December 2013). Evaluation of the bacterial diversity and its evolution during storage of fresh beef from British and Belgian origins under different atmosphere and temperature conditions [Paper presentation]. BAMST Symposium 2013, Kortrijk, Belgium.

Rodriguez Diaz, C., Taminiau, B., Avesani, V., Korsak Koulagenko, N., Van Broeck, J., Delmée, M., & Daube, G. (21 November 2013). Clostridium difficile: an emerging zoonotic pathogen ? [Paper presentation]. Diagnostic et surveillance des maladies infectieuses, Brussels, Belgium.

Taminiau, B., Rodriguez Diaz, C., Korsak Koulagenko, N., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (07 November 2013). Association of classical microbiology and targeted metagenomic analysis to evaluate the presence of Clostridium difficile in a Belgian nursing home [Paper presentation]. 15th Gut Day Symposium, Groningen, Netherlands.

Delcenserie, V., Taminiau, B., Gavini, F., de Schaetzen, M.-A., Cleenwerck, I., Theves, M., Mahieu, M., & Daube, G. (29 October 2013). Detection and characterization of Bifidobacterium crudilactis and B. mongoliense able to grow during the manufacturing process of French raw milk cheeses. BMC Microbiology, 13, 239. doi:10.1186/1471-2180-13-239

Rodriguez Diaz, C., Taminiau, B., Korsak Koulagenko, N., Avesani, V., Van Broeck, J., Delmée, M., & Daube, G. (22 October 2013). ASSOCIATION OF CLASSICAL MICROBIOLOGY AND TARGETED METAGENOMIC ANALYSIS TO EVALUATE THE PRESENCE OF CLOSTRIDIUM DIFFICILE IN A BELGIAN NURSING HOME [Paper presentation]. ClostPath 2013 Meeting, Palm Cove, Tropical North Queensland, Australia.

Abekhti, A., Taminiau, B., & Daube, G. (11 October 2013). Optimisation of DNA extraction from the Algerian traditional date Product « Btana » for bacterial diversity analysis by Pyrosequencing technology [Poster presentation]. Third Scientific Day, Liège, Belgium.

Didimo Imazaki, P. H., Tahiri, A., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (11 October 2013). Bacterial diversity and its evolution during storage of fresh beef from different origins under different atmosphere and temperature conditions [Poster presentation]. 3rd FMV Scientific Meeting, Liège, Belgium.

Ngassam Tchamba, C., Leroy, P., Taminiau, B., & Daube, G. (11 October 2013). Évaluation de l'influence du sevrage sur les modifications de la composition de la flore bactérienne intestinale des porcelets [Poster presentation]. Third Scientific Day, Liège, Belgium.

Delhalle, L., Taminiau, B., Ellouze, M., Nezer, C., & Daube, G. (2013). Predictive microbiology combined with metagenomic analysis targeted on the 16S rDNA : A new approach for food quality. In M. Ellouze & F. Tenenhaus-Aziza (Eds.), Proceedings of thge 8th International Conference on predictive microbiology in foods (ICPMF8) (pp. 223-224). Paris, France: Institut Pasteur.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Avesani, V., Delmée, M., & Daube, G. (13 September 2013). Clostridium difficile in pigs and cattle at slaughterhouse, carcass contamination and prevalence in retail meat in Belgium [Paper presentation]. Eighteenth Conference on Food Microbiology, Brussels, Belgium.

Delhalle, L., Taminiau, B., Nezer, C., & Daube, G. (01 July 2013). Metagenomic analysis targeted on the 16S ribosomal DNA to study the quality of meat : a example with raw minced beef meat [Poster presentation]. Microbial Spoilers in Food - July 1st 2nd 3rd, 2013, Quimper, France.

Rodrigues, A., Taminiau, B., & Daube, G. (July 2013). Prevalence of Clostridium estertheticum and Clostridium gasigenes in cattle at a slaughterhouse in Belgium [Poster presentation]. Microbial Spoilers in food 2013, Quimper, France.

Taminiau, B., Delhalle, L., Rodriguez Diaz, C., Nezer, C., Crevecoeur, S., Piccolo, D., & Daube, G. (01 July 2013). Impact of the use of lactic/diacetic acids on the microbial diversity of white pudding samples during ageing under various conditions, with the use of next-gen sequencing and targeted metagenomic approach [Poster presentation]. Microbial Spoilers in Food, Quimper, France.

Bardiau, M., Yamazaki, K., Duprez, J.-N., Taminiau, B., Mainil, J., & Ote, I. (May 2013). Genotypic and phenotypic characterisation of methicillin-resistant Staphylococcus aureus (MRSA) isolated from milk of bovine mastitis. Letters in Applied Microbiology, 57, 181-186. doi:10.1111/lam.12099

Boko, C., Kpodekon, T., Duprez, J.-N., Imberechts, H., Taminiau, B., Bertrand, S., & Mainil, J. (2013). Identification and typing of Salmonella serotypes isolated from guinea fowl (Numida meleagris) farms in Benin during four laying seasons (2007-2010). Avian Pathology, 42, 1-8. doi:10.1080/03079457.2012.751484

Didimo Imazaki, P. H., Tahiri, A., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (December 2012). La diversité bactérienne et son évolution pendant la conservation de viandes bovines fraîches de différentes origines conditionnées sous vide [Poster presentation]. 19e Journées 3R Rencontres Recherches Ruminants, Paris, France.

Didimo Imazaki, P. H., Tahiri, A., Baptista Rodrigues, A. L., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (13 November 2012). Viandes bovines à longue durée de conservation conditionnées sous vide : isolement et caractérisation de souches de Carnobacterium [Poster presentation]. 14èmes Journées Sciences du Muscle et Technologies des Viandes, Caen, France.

Delhalle, L., Nezer, C., Darcis, A., Taminiau, B., & Daube, G. (19 October 2012). The extraordinary potential of metagenomic tools for food microbiology: an example with microbiota of four cheeses [Poster presentation]. Dix-septième conférence de microbiologie des aliments, Bruxelles, Belgium.

Delhalle, L., Taminiau, B., Nezer, C., & Daube, G. (19 October 2012). Study of the microbial flora of freshwater and seawater fish filets in different packaging conditions by metagenomic analysis targeted on the 16S ribosomal DNA [Paper presentation]. 2nd Scientific day, Liege, Belgium.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Avesani, V., Delmée, M., & Daube, G. (22 September 2012). Clostridium difficile in intestinal contents and on carcasses of pigs and cattle at slaughterhouse in Belgium [Poster presentation]. 4th International Clostridium difficile Symposium, Bled, Slovenia.

Delhalle, L., Taminiau, B., Nezer, C., & Daube, G. (20 September 2012). Study of the microbial flora of freshwater and seawater fish filets in different packaging conditions by metagenomic analysis targeted on the 16S ribosomal DNA [Paper presentation]. Dix-septième conférence de microbiologie des aliments, Bruxelles, Belgium.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Avesani, V., Delmée, M., & Daube, G. (20 September 2012). Clostridium difficile is present in retail meat in Belgium [Poster presentation]. 17th Conference on Food Microbiology, Brussels, Belgium.

Delhalle, L., Nezer, C., Darcis, A., Taminiau, B., & Daube, G. (03 September 2012). The extraordinary potential of metagenomic tools for food microbiology: an example with microbiota of four cheeses [Poster presentation]. Second scientific meeting of the veterinary medicine of the University of Liège, Liège, Belgium.

Delhalle, L., Nezer, C., Taminiau, B., Darcis, A., & Daube, G. (03 September 2012). The extraordinary potential of metagenomic tools for food microbiology: an example with bacterial microbiota of raw and pasteurized milk cheeses [Poster presentation]. Food Micro 2012, Istambul, Turkey.

Delhalle, L., Taminiau, B., Nezer, C., Darcis, A., & Daube, G. (03 September 2012). A new approach of food microbiology with the metagenomic tools: an application on fish [Poster presentation]. FoodMicro 2012, Istambul, Turkey.

Delhalle, L., Nezer, C., Darcis, A., Taminiau, B., & Daube, G. (22 May 2012). L’extraordinaire potentiel de l’approche métagénomique en microbiologie des aliments: analyse du microbiote de fromages au lait cru et pasteurisé [Poster presentation]. Club des Bactéries Lactiques, Clermont Ferrand, France.

Delhalle, L., Taminiau, B., Nezer, C., & Daube, G. (22 May 2012). Une nouvelle approche de la microbiologie alimentaire avec l’analyse métagénomique : un exemple avec une analyse de filets de poisson [Poster presentation]. Club des Bactéries Lactiques, Clermont Ferrand, France.

Rodriguez Diaz, C., Taminiau, B., Van Broeck, J., Delmee, M., & Daube, G. (18 April 2012). Clostridium difficile in farm and slaughter animals in Belgium: detection and characterization [Poster presentation]. Biomedica, Liège, Belgium.

Didimo Imazaki, P. H., Taminiau, B., Nezer, C., Daube, G., & Clinquart, A. (April 2012). Study of the microbial diversity in vacuum-packed chilled beef from different origins through a metagenomics approach [Poster presentation]. Biomedica 2012, Liège, Belgium.

Bardiau, M., Taminiau, B., Duprez, J.-N., Labrozzo, S., & Mainil, J. (2012). Comparison between a bovine and a human enterohaemorrhagic Escherichia coli strain of serogroup O26 by suppressive substractive hybridization reveals the presence of atypical factors in EHEC and EPEC strains. FEMS Microbiology Letters, 330 (2), 132-139.

Didimo Imazaki, P. H., Nezer, C., Taminiau, B., Daube, G., & Clinquart, A. (09 December 2011). Caractérisation des viandes bovines à très longue durée de conservation sous vide [Poster presentation]. 1st Scientific Meeting of the Faculty of Veterinary Medicine, Liège, Belgium.

Taminiau, B., Nezer, C., Poullet, J.-B., Adolphe, Y., Clinquart, A., & Daube, G. (09 December 2011). La métagénomique au service de la microbiologie alimentaire : étude de l’évolution des populations microbiennes lors du vieillissement de deux matrices alimentaires [Paper presentation]. First scientific meeting of the veterinary medicine of the University of Liège, Liège, Belgium.

Didimo Imazaki, P. H., Maréchal, A., Nezer, C., Taminiau, B., Daube, G., & Clinquart, A. (18 November 2011). Evaluation de la diversité bactérienne et de son évolution pendant la conservation de la viande fraîche bovine de différentes origines emballée sous vide [Poster presentation]. Ecosystèmes Microbiens et Bioprotection des Aliments, Nantes, France.

Didimo Imazaki, P. H., Maréchal, A., Nezer, C., Taminiau, B., Daube, G., & Clinquart, A. (07 August 2011). Influence of temperature on conservability of chilled vacuum packed beef from different origins [Poster presentation]. 57th International Congress of Meat Science and Technology, Gand, Belgium.

Kadja, M. C., Kpodekon, M., Kane, Y., Tchassou, K., Kaboret, Y., Mainil, J., & Taminiau, B. (2010). Typing of Staphylococcus aureus strains isolated from milk of cows with subclinical mastitis in Dakar, Senegal. Bulletin of Animal Health and Production in Africa, 58, 95-205.

Muylaert, A., Lebrun, M., Duprez, J.-N., Labrozzo, S., Theys, H., Taminiau, B., & Mainil, J. (2010). Enterotoxaemia-like syndrome and Clostridium perfringens in veal calves. Veterinary Record, 167, 64-65. doi:10.1136/vr.b4869

Loret, S., Rusu, D., Moualij, B. E., Taminiau, B., Heinen, E., Dandrifosse, G., & Mainil, J. (2009). Preliminary characterization of jejunocyte and colonocyte cell lines isolated by enzymatic digestion from adult and young cattle. Research in Veterinary Science, 87 (1), 123-32. doi:10.1016/j.rvsc.2008.12.002

Letesson, J.-J., Lestrate, P., Delrue, R.-M., DANESE, I., Bellefontaine, F., Fretin, D., Taminiau, B., Tibor, A., Dricot, A., Deschamps, C., Haine, V., LEONARD, S., LAURENT, T., Mertens, P., Vandenhaute, J., & De Bolle, X. (December 2002). Fun stories about Brucella: the "furtive nasty bug". Veterinary Microbiology, 90 (1-4), 317-28. doi:10.1016/S0378-1135(02)00208-0