Publications and communications of Marylène Vandevenne

Mahapatra, M., Bourguignon, M., Grignard, B., Vandevenne, M., Galleni, M., & Detrembleur, C. (In press). Nonconventional fluorescent non‐isocyanate polyurethane foams for multipurpose sensing applications. Angewandte Chemie International Edition, 202413605. doi:10.1002/anie.202413605

Gemander, N., Kemlin, D., Depickère, S., Kelkar, N. S., Sharma, S., Pannus, P., Waegemans, A., Olislagers, V., Georges, D., Dhondt, E., Braga, M., Heyndrickx, L., Michiels, J., Thiriard, A., Lemy, A., Baudoux, T., Vandevenne, M., Goossens, M. E., Matagne, A., ... Marchant, A. (27 November 2024). COVID-19 vaccine responses are influenced by distinct risk factors in naive and SARS-CoV-2 experienced hemodialysis recipients. Vaccine, 44, 126544. doi:10.1016/j.vaccine.2024.126544

Guérin, M., Vandevenne, M., Brans, A., Matagne, A., Marquant, R., Prost, E., Octave, S., Avalle, B., Maffucci, I., & Padiolleau-Lefèvre, S. (23 July 2024). Production, purification, and quality assessment of borrelial proteins CspZ from Borrelia burgdorferi and FhbA from Borrelia hermsii. Applied Microbiology and Biotechnology, 108 (1), 425. doi:10.1007/s00253-024-13195-2

Boclinville, A., Vandevenne, M., Ambroggio, E., Thelen, N., Thiry, M., Jacobs, N., Brans, A., Fillet, M., & Servais, A.-C. (April 2024). Interaction studies between human papillomavirus virus-like particles and laminin 332 by affinity capillary electrophoresis assisted by bio-layer interferometry. Talanta, 270, 125602. doi:10.1016/j.talanta.2023.125602

Gemander, N., Kemlin, D., Depickère, S., Kelkar, N. S., Pannus, P., Sharma, S., Waegemans, A., Olislagers, V., Georges, D., Dhondt, E., Braga, M., Heyndrickx, L., Michiels, J., Thiriard, A., Lemy, A., Vandevenne, M., Goossens, M. E., Matagne, A., Desombere, I., ... Marchant, A. (March 2024). Hybrid Immunity Overcomes Defective Immune Response to COVID-19 Vaccination in Kidney Transplant Recipients. Kidney International Reports, 9 (3), 635 - 648. doi:10.1016/j.ekir.2023.12.008

Fanara, S., Schloesser, M., Joris, M., De Franco, S., Vandevenne, M., Kerff, F., Hanikenne, M.* , & Motte, P.*. (2024). The Arabidopsis SR45 splicing factor bridges the splicing machinery and the exon-exon junction complex. Journal of Experimental Botany. doi:10.1093/jxb/erae002

Quiroga Jara, E., Brans, A., Vandevenne, M., & Matagne, A. (December 2023). Green lentil flour protein as a new protein source to identify novel bioactive peptides [Poster presentation]. One-Day Symposium in Current trends in membrane protein biophysics, Namur, Belgium.

Kemlin, D., Gemander, N., Depickère, S., Olislagers, V., Georges, D., Waegemans, A., Pannus, P., Lemy, A., Goossens, M. E., Desombere, I., Michiels, J., Vandevenne, M., Heyndrickx, L., Ariën, K. K., Matagne, A., Ackerman, M. E., Le Moine, A., & Marchant, A. (10 February 2023). Humoral and cellular immune correlates of protection against COVID-19 in kidney transplant recipients. American Journal of Transplantation, 23 (5), 649 - 658. doi:10.1016/j.ajt.2023.02.015

Robert, C., Kerff, F., Bouillenne, F., Gavage, M., Vandevenne, M., Filée, P., & Matagne, A. (2023). Structural analysis of the interaction between human cytokine BMP-2 and the antagonist Noggin reveals molecular details of cell chondrogenesis inhibition. Journal of Biological Chemistry, 102892. doi:10.1016/j.jbc.2023.102892

Cawez, F., Mercuri, P., Morales Yánez, F. J., Maalouf, R., Vandevenne, M., Kerff, F., Guérin, V., Mainil, J., Thiry, D., Saulmont, M., Vanderplasschen, A., Lafaye, P., Aymé, G., Bogaerts, P., Dumoulin, M., & Galleni, M. (2023). Development of Nanobodies as Theranostic Agents against CMY-2-Like Class C b-Lactamases. Antimicrobial Agents and Chemotherapy. doi:10.1128/aac.01499-22

Quiroga Jara, E.* , Gilson, E.* , Brans, A., Vandevenne, M., & Matagne, A. (2023). Development of protein hydrolysates from green lentil flour using enzymatic and/or fermentation processes (WP1) [Poster presentation]. Journée scientifique du portefeuille FoodWal, Louvain-la-Neuve, Belgium.

Hu, Y., Romão, E., Vincke, C., Brys, L., Elkrim, Y., Vandevenne, M., Liu, C., & Muyldermans, S. (2021). Intrabody targeting HIF-1α mediates transcriptional downregulation of target genes related to solid tumors. International Journal of Molecular Sciences, 22 (22), 12335. doi:10.3390/ijms222212335

De Franco, S., Vandenameele, J., Brans, A., Verlaine, O., Bendak, K., Damblon, C., Matagne, A., Segal, D., Galleni, M., Mackay, J., & Vandevenne, M. (21 February 2019). Exploring the suitability of RanBP2-type Zinc Fingers for RNA-binding protein design. Scientific Reports, 9 (1), 2484. doi:10.1038/s41598-019-38655-y

Madland, E., Crasson, O., Vandevenne, M., Sørlie, M., & Aachmann, F. L. (2019). NMR and Fluorescence Spectroscopies Reveal the Preorganized Binding Site in Family 14 Carbohydrate-Binding Module from Human Chitotriosidase. ACS Omega, 4 (26), 21975-21984. doi:10.1021/acsomega.9b03043

Vandevenne, M. (26 October 2018). Design of RNA-binding proteins for the benefits of research and therapy [Paper presentation]. The 29th International Faltertage on Protein Folding, Dynamics and Stability, Halle, Germany.

Dondelinger, M., Filée, P., Sauvage, E., Quinting, B., Muyldermans, S., Galleni, M., & Vandevenne, M. (16 October 2018). Understanding the significance and implications of antibody numbering and antigen-binding surface/residue definition. Frontiers in Immunology, 9 (OCT). doi:10.3389/fimmu.2018.02278

De Franco, S., O'Connell, M., & Vandevenne, M. (2018). Engineering RNA-binding proteins by modular assembly of RanBP2-type Zinc Fingers. In J. Liu (Ed.), Methods in Molecular Biology: Zinc Finger Proteins (pp. 57-74). Springer Nature. doi:10.1007/978-1-4939-8799-3_5

Cawez, F., Duray, E., Hu, Y., Vandenameele, J., Romao, E., Vinckle, C., Dumoulin, M., Galleni, M., Muyldermans, S., & Vandevenne, M. (25 May 2018). Combinatorial Design of a Nanobody that Specifically Targets Structured RNAs. Journal of Molecular Biology, 430 (11), 1652-1670. doi:10.1016/j.jmb.2018.03.032

Vandevenne, M., Dondelinger, M., Yunus, S., Freichels, A., Freichels, R., Crasson, O., Rhazi, N., Bogaerts, P., Galleni, M., & Filée, P. (2018). The use of a β-lactamase – based conductimetric biosensor assay to detect biomolecular interactions. Journal of Visualized Experiments, (132). doi:10.3791/55414

Ramalapa, B., Crasson, O., Vandevenne, M., Galleni, M., & Frank, B. (06 September 2017). Protein-polysaccharide complexes, a tool for protein delivery in CaCO3 microparticles [Poster presentation]. Annual Conference of the European Society of Biomaterials, Athens, Greece.

Ramalapa, B., Crasson, O., Vandevenne, M., Emmanuel, G., Alain, G., Galleni, M., Boury, F., & Cordonnier, T. (16 August 2017). Protein–polysaccharide complexes for enhanced protein delivery in hyaluronic acid templated calcium carbonate microparticles. Journal of Materials Chemistry B, 5, 7360-7368. doi:10.1039/C7TB01538K

Ramalapa, B., Crasson, O., Vandevenne, M., Galleni, M., & Frank, B. (17 July 2017). Protein-polysaccharide complexes for improved protein delivery within CaCO3 microparticles [Paper presentation]. Controlled Release Society Meeting, Boston, United States.

Ramalapa, B., Crasson, O., Vandevenne, M., Galleni, M., & Frank, B. (30 May 2017). Improved encapsulation of proteins within calcium carbonate microparticles by means of protein-polysaccharide complexes [Poster presentation]. Journée Scientifique SFR Santé, Angers, France.

Vandevenne, M. (08 March 2017). RNA-binding protein engineering for the benefits of research and therapy [Paper presentation]. University of Sydney Internal Seminars, Sydney, Australia.

Crasson, O., Courtade, G., Léonard, R., Aachmann, F., Legrand, F., Parente, R., Baurain, D., Galleni, M., Sorlie, M., & Vandevenne, M. (2017). Human chitotriosidase: Catalytic domain or carbohydrate binding module, who's leading HCHT's biological function. Scientific Reports, 7 (1). doi:10.1038/s41598-017-02382-z

De Franco, S., Vandenameele, J., Galleni, M., & Vandevenne, M. (29 June 2016). Exploring potentialities of RanbP2-type Zinc Fingers in RNA-binding proteins design [Poster presentation]. RNA 2016- The RNA Society of Japan 18th Annual Meeting and the 21st Annual Meeting of the RNA Society, Kyoto, Japan.

Vandevenne, M. (27 May 2016). Design of proteins able to bind specifically to single-stranded or structured RNAs in order to investigate the non-coding RNA world [Paper presentation]. University of Siena Internal Seminars, Siena, Italy.

Ramalapa, B., Crasson, O., Vandevenne, M., Galleni, M., Boury, F., & Cordonnier, T. (22 March 2016). The use of protein-polysaccharide complexes to enhance protein delivery in CaCO3 microparticles [Paper presentation]. FADEX 2016 Nanoparticles for Medicine, Grenoble, France.

Blythe, A., Yazar-Klosinski, B., Webster, M., Chen, E., Vandevenne, M., Bendak, K., Mackay, J., Hartzog, G., & Vrielink, A. (2016). The yeast transcription elongation factor Spt4/5 is a sequence-specific RNA binding protein. Protein Science: A Publication of the Protein Society, 25 (9), 1710-1721. doi:10.1002/pro.2976

Figueroa Yévenes, M., Sleutel, M., Vandevenne, M., Parvizi, G., Attout, S., Jacquin, O., Vandenameele, J., Fischer, A. W., Damblon, C., Goormaghtigh, E., Valerio-Lepiniec, M., Urvoas, A., Durand, D., Pardon, E., Steyaert, J., Minard, P., Maes, D., Meiler, J., Matagne, A., ... Van de Weerdt, C. (2016). The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools. Journal of Structural Biology. doi:10.1016/j.jsb.2016.05.004

Ramalapa, B., Crasson, O., Vandevenne, M., Galleni, M., Cordonnier, T., & Boury, F. (10 December 2015). Design of new delivery systems for therapeutic proteins based on calcium carbonate microspheres [Poster presentation]. Ecole doctorale biologie santé journées scientifique, Nantes, France.

Silva, A., Ryan, D., Galanty, Y., Low, J., Vandevenne, M., Jackson, S., & Mackay, J. (2015). The N-terminal region of CHD4 is essential for activity and contains a HMG-box-like-domain that can bind poly(ADP-ribose). Journal of Biological Chemistry.

Crasson, O., Rhazi, N., Jacquin, O., Freichels, A., Jérôme, C., Ruth, N., Galleni, M., Filée, P., & Vandevenne, M. (October 2015). Enzymatic functionalization of a nanobody using protein insertion technology. Protein Engineering, Design and Selection, 28 (10), 451-460. doi:10.1093/protein/gzv020

Crasson, O., Legrand, F., Léonard, R., Baurain, D., Galleni, M., & Vandevenne, M. (August 2015). The hidden face of the human macrophage chitotriosidase: taking a new look at this enzyme based on the biochemical and phylogenomic analysis of its chitin binding domain [Poster presentation]. Gordon Research Conferences : Cellulosomes, Cellulases & Other Carbohydrate Modifying Enzymes, Andover MA, United States.

Shepherd, N., Gamsjaeger, R., Vandevenne, M., & Cubbedu, L. (February 2015). Site directed nitroxide spin labeling of oligonucleotides for NMR and EPR studies. Tetrahedron, 71 (5), 813-819. doi:10.1016/j.tet.2014.12.056

Crasson, O., Galleni, M., Parente, R. (Other coll.), Vandevenne, M. (Other coll.), & Filée, P. (Other coll.). (15 May 2014). How to build a biological linker dedicated to the engineering of novel drug delivery systems [Poster presentation]. Bioforum.

Vandevenne, M. (05 May 2014). Class A beta-lactamases as Versatile Scaffolds to Create Hybrid Enzymes: Applications from Basic Research to Medicine (Invited speaker) [Paper presentation]. Protein engineering and selection (PEGS) Summit, Boston, United States.

Sue, X. C., Wang, Y., Yagi, H., Shishmarev, D., Mason, C. E., Smith, P. J., Vandevenne, M., Dixon, N. E., & Otting, G. (2014). Bound or free: interaction of the C-terminal domain of Escherichia coli single-stranded DNA-binding protein (SSB) with the tetrameric core of SSB. Biochemistry.

Vandevenne, M., O'Connell, M. R., Helder, S., Shepherd, N. E., Matthews, J. M., Kwan, A. H., Segal, D. J., & Mackay, J. P. (2014). Engineering Specificity Changes on a RanBP2 Zinc Finger that Binds Single-Stranded RNA. Angewandte Chemie International Edition. doi:10.1002/anie.201402980

Vandevenne, M. (20 July 2013). Engineering Specificity Changes on The RanBP2 Single-Stranded RNA Binding Zinc Finger [Paper presentation]. East coast protein meeting, Coffs Harbor, Australia.

Gamsjaeger, R., O'Connell, M. R., Cubeddu, L., Shepherd, N. A., Lowry, J. A., Kwan, A. H., Vandevenne, M., Swanton, M. K., Matthews, J. M., & Mackay, J. P. (2013). A structural analysis of DNA binding by myelin transcription factor 1 double zinc fingers. Journal of Biological Chemistry. doi:10.1074/jbc.M113.482075

Vandevenne, M., Jacques, D. A., Artuz, C. D., Nguyen, C. D., Kwan, A. H., Segal, D. J., Matthews, J. M., Crossley, M., Guss, J. M., & Mackay, J. P. (2013). New insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217. Journal of Biological Chemistry. doi:10.1074/jbc.M112.441451

Vandevenne, M. (25 September 2012). New insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217 (Invited speaker from the Sydney Protein Group) [Paper presentation]. Annual conference of the Australian society for biochemistry and molecular biology (ComBio), Adelaide, Australia.

Vandevenne, M. (13 March 2012). Engineering specificity changes on the RanBP2-type Zinc Finger using a phage-display based approach [Paper presentation]. University of California Davis Internal Seminar, Davis, United States.

O'Connell, M. R., Vandevenne, M., Nguyen, C. D., Matthews, J. M., Gamsjaeger, R., Segal, D. J., & Mackay, J. P. (2012). Modular assembly of RanBP2-type zinc finger domains to target single- stranded RNA. Angewandte Chemie International Edition. doi:10.1002/anie.201200866

Vandevenne, M., Galleni, M., & Filée, P. (2012). How to make good use of a “bad” enzyme: utilization of efficient β-lactamases for the benefits of biochemical research. In J.-M. Frère (Ed.), β-lactamases (pp. 479-503). Indiana, United States: Nova Science.

Nunez, N., Clifton, M. M., Funnell, A. P., Artuz, C., Hallal, S., Quinlan, K. G., Font, J., Vandevenne, M., Setiyaputra, S., Pearson, R. C., Mackay, J. P., & Crossley, M. (2011). The multi-zinc finger protein ZNF217 contacts DNA through a two-finger domain. Journal of Biological Chemistry. doi:10.1074/jbc.M111.301234

Vandevenne, M., Campisi, V., Freichels, A., Gillard, C., Gaspard, G., Frère, J.-M., Galleni, M., & Filée, P. (2011). Comparative functional analysis of the human macrophage chitotriosidase. Protein Science: A Publication of the Protein Society. doi:10.1002/pro.676

Vandevenne, M., GASPARD, G., Belgsir, E. M., Ramnath, M., Cenatiempo, Y., Delneuville, D., Dumoulin, M., Frère, J.-M., Matagne, A., Galleni, M., & Filee, P. (2011). Effects of monopropanediamino-beta-cyclodextrin on the denaturation process of the hybrid protein BlaPChBD. Biochimica et Biophysica Acta. doi:10.1016/j.bbapap.2011.05.007

Vandevenne, M. (19 April 2008). The hybrid protein BlaPChBD as a versatile tool to study protein/ligand interactions [Paper presentation]. One-day symposium of the thematic doctoral school, Brussels, Belgium.

Vandevenne, M., Gaspard, G., Yilmaz, N., Giannotta, F., Frère, J.-M., Galleni, M., & Filée, P. (2008). Rapid and easy development of versatile tools to study protein/ligand interactions. Protein Engineering, Design and Selection. doi:10.1093/protein/gzn021

Vandevenne, M., Filée, P., Scarafone, N., Cloes, B., Gaspard, G., Yilmaz, N., Dumoulin, M., François, J.-M., Frère, J.-M., & Galleni, M. (2007). The Bacillus licheniformis BlaP beta-lactamase as a model protein scaffold to study the insertion of protein fragments. Protein Science: A Publication of the Protein Society, 16 (10), 2260-71. doi:10.1110/ps.072912407