[en] This paper introduces an open implementation of DICOM for whole-slide microscopic imaging, following Supplement 145 of the DICOM standard. The software is divided into two parts: (a) a command-line tool to convert an whole-slide image to the DICOM format, and (b) a zero-footprint Web interface to display such DICOM images. The software architecture leverages the DICOM server Orthanc. The entire framework is available as free and open-source software. The existence of this software supports the development of digital pathology and telepathology in clinical environments, featuring a smooth integration with existing EHR and PACS solutions.
Disciplines :
Radiologie, médecine & imagerie nucléaire
Auteur, co-auteur :
JODOGNE, Sébastien ; Centre Hospitalier Universitaire de Liège - CHU > Département de Physique Médicale
LENAERTS, Eric ; Centre Hospitalier Universitaire de Liège - CHU > Département de Physique Médicale
MARQUET, Lara ; Centre Hospitalier Universitaire de Liège - CHU > Département de Physique Médicale
ERPICUM, Charlotte ; Centre Hospitalier Universitaire de Liège - CHU > Service d'anatomie et cytologie pathologiques
GREIMERS, Roland ; Centre Hospitalier Universitaire de Liège - CHU > Service d'anatomie et cytologie pathologiques
GILLET, Pierre ; Centre Hospitalier Universitaire de Liège - CHU > Direction médicale
HUSTINX, Roland ; Centre Hospitalier Universitaire de Liège - CHU > Service médical de médecine nucléaire et imagerie onco
DELVENNE, Philippe ; Centre Hospitalier Universitaire de Liège - CHU > Service d'anatomie et cytologie pathologiques
Langue du document :
Anglais
Titre :
Open Implementation of DICOM for Whole-Slide Microscopic Imaging
Date de publication/diffusion :
2017
Nom de la manifestation :
12th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISAPP 2017)
Lieu de la manifestation :
Porto, Portugal
Date de la manifestation :
2017-02-27 to 2017-03-01
Manifestation à portée :
International
Titre de l'ouvrage principal :
Proceedings,- 12th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (Volume 6)
Cucoranu, I. C., Parwani, A. V., Vepa, S., Weinstein, R. S., and Pantanowitz, L. (2014). Digital pathology: A systematic evaluation of the patent landscape. Journal of Pathology Informatics, 5(1):16.
DICOM Standards Committee, Working Group 26, Pathology (2010). Supplement 145: Whole slide microscopic image IOD and SOP classes.
Farahani, N. and Pantanowitz, L. (2016). Overview of telepathology. Clinics in Laboratory Medicine, 36(1):101-112.
Fielding, R. (2000). Architectural Styles and the Design of Network-based Software Architectures. PhD thesis, University of California, Irvine.
Goode, A., Gilbert, B., Harkes, J., Jukic, D., and Satyanarayanan, M. (2013). OpenSlide: A vendor-neutral software foundation for digital pathology. Journal of Pathology Informatics, 4(1):27. Freely available at: http://openslide.org/.
Jodogne, S., Bernard, C., Devillers, M., Lenaerts, E., and Coucke, P. (2013). Orthanc-Lightweight, RESTful DICOM server for healthcare and medical research. In IEEE 10th International Symposium on Biomedical Imaging (ISBI), pages 190-193, San Francisco, USA. Freely available at: http://www.orthanc-server.com/.
Ling, C. and Krishnappa, P. (2012). Telepathology-An update. International Journal of Collaborative Research on Internal Medicine and Public Health, 4(12).
Maŕee, R., Rollus, L., Stevens, B., Hoyoux, R., Louppe, G., Vandaele, R., Begon, J.-M., Kainz, P., Geurts, P., and Wehenkel, L. (2016). Collaborative analysis of multi-gigapixel imaging data using cytomine. Bioinformatics. Freely available at: http://cytomine.be/.
NEMA-National Electrical Manufacturers Association (2016). NEMA PS3 /ISO 12052, Digital Imaging and Communications in Medicine (DICOM) standard. Freely available at: http://medical.nema.org/.
Open Source Geospatial Foundation (2010). Openlayers: Free maps for the web. Freely available at: http://www.openlayers.org/.
Ribback, S., Flessa, S., Gromoll-Bergmann, K., Evert, M., and Dombrowski, F. (2014). Virtual slide telepathology with scanner systems for intraoperative frozensection consultation. Pathology-Research and Practice, 210(6):377-382.
Warnock, M. J., Toland, C., Evans, D., Wallace, B., and Nagy, P. (2007). Benefits of using the DCM4CHE DICOM archive. Journal of Digital Imaging, 20(Supp. 1):125-129.
Webster, J. D. and Dunstan, R. W. (2014). Whole-slide imaging and automated image analysis: Considerations and opportunities in the practice of pathology. Veterinary Pathology, 51(1):211-223.