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Irrthum Alexandre

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Main Referenced Co-authors
Geurts, Pierre  (12)
Huynh-Thu, Vân Anh  (12)
Wehenkel, Louis  (11)
Saeys, Yvan (3)
Aderhold, Andrej (1)
Main Referenced Keywords
Bioinformatics (5); Machine learning (4); Machine Learning (2); bioinformatics (1); systems biology (1);
Main Referenced Unit & Research Centers
Systems and modeling (Dept. of EE and CS) and Bioinformatics and modeling (GIGA-R) (1)
Main Referenced Disciplines
Computer science (11)
Biochemistry, biophysics & molecular biology (10)
Cardiovascular & respiratory systems (1)
Oncology (1)

Publications (total 14)

The most downloaded
385 downloads
Huynh-Thu, V. A., Irrthum, A., Wehenkel, L., & Geurts, P. (28 September 2010). Inferring Regulatory Networks from Expression Data Using Tree-Based Methods. PLoS ONE, 5 (9), 12776. doi:10.1371/journal.pone.0012776 https://hdl.handle.net/2268/73256

The most cited

1247 citations (OpenCitations)

Marbach, D., Costello, J. C., Küffner, R., Vega, N. M., Prill, R. J., Camacho, D. M., Allison, K. R., Aderhold, A., Bonneau, R., Chen, Y., Cordero, F., Crane, M., Dondelinger, F., Drton, M., Esposito, R., Foygel, R., de la Fuente, A., Gertheiss, J., Geurts, P., ... Stolovitzky, G. (15 July 2012). Wisdom of crowds for robust gene network inference. Nature Methods, 9, 796-804. doi:10.1038/nmeth.2016 https://hdl.handle.net/2268/127819

JOSSE, C., Bouznad, N., Geurts, P., Irrthum, A., Huynh-Thu, V. A., Servais, L., Hego, A., Delvenne, P., Bours, V., & Oury, C. (2014). Identification of a microRNA landscape targeting the PI3K/Akt signaling pathway in inflammation-induced colorectal carcinogenesis. American Journal of Physiology - Gastrointestinal and Liver Physiology, 306, 229-43. doi:10.1152/ajpgi.00484.2012
Peer Reviewed verified by ORBi

Bogie, J. F. J., Timmermans, S., Huynh-Thu, V. A., Irrthum, A., Smeets, H. J. M., Gustafsson, J.-A., Steffensen, K. R., Mulder, M., Stinissen, P., Hellings, N., & Hendriks, J. J. A. (12 September 2012). Myelin-Derived Lipids Modulate Macrophage Activity by Liver X Receptor Activation. PLoS ONE, 7 (9), 44998. doi:10.1371/journal.pone.0044998
Peer Reviewed verified by ORBi

Marbach, D., Costello, J. C., Küffner, R., Vega, N. M., Prill, R. J., Camacho, D. M., Allison, K. R., Aderhold, A., Bonneau, R., Chen, Y., Cordero, F., Crane, M., Dondelinger, F., Drton, M., Esposito, R., Foygel, R., de la Fuente, A., Gertheiss, J., Geurts, P., ... Stolovitzky, G. (15 July 2012). Wisdom of crowds for robust gene network inference. Nature Methods, 9, 796-804. doi:10.1038/nmeth.2016
Peer Reviewed verified by ORBi

Huynh-Thu, V. A., Vandel, J., Irrthum, A., Wehenkel, L., & Geurts, P. (01 June 2012). Inferring gene regulatory networks from genetical genomics data [Paper presentation]. Capita Selecta in Complex Disease Analysis, Liege, Belgium.
Editorial reviewed

Garbacki, N., Di Valentin, E., Huynh-Thu, V. A., Geurts, P., Irrthum, A., Crahay, C., Arnould, T., Deroanne, C., Piette, J., Cataldo, D., & Colige, A. (2011). MicroRNAs Profiling in Murine Models of Acute and Chronic Asthma: A Relationship with mRNAs Targets. PLoS ONE. doi:10.1371/journal.pone.0016509
Peer Reviewed verified by ORBi

Huynh-Thu, V. A., Irrthum, A., Wehenkel, L., Saeys, Y., & Geurts, P. (2011). Inferring gene regulatory networks from expression data using tree-based methods [Paper presentation]. ISMB/ECCB 2011, Vienna, Austria.
Peer reviewed

Huynh-Thu, V. A., Irrthum, A., Wehenkel, L., Saeys, Y., & Geurts, P. (16 November 2010). Regulatory network inference with GENIE3: application to the DREAM5 challenge [Paper presentation]. 3rd Annual Joint Conference on Systems Biology, Regulatory Genomics, and Reverse Engineering Challenges, New York City, United States - New York.
Editorial reviewed

Huynh-Thu, V. A., Irrthum, A., Wehenkel, L., & Geurts, P. (October 2010). Inferring Regulatory Networks from Expression Data using Tree-based Methods [Paper presentation]. Workshop on Machine Learning in Systems Biology (MLSB10), Edinburgh, United Kingdom.
Peer reviewed

Huynh-Thu, V. A., Irrthum, A., Wehenkel, L., & Geurts, P. (28 September 2010). Inferring Regulatory Networks from Expression Data Using Tree-Based Methods. PLoS ONE, 5 (9), 12776. doi:10.1371/journal.pone.0012776
Peer Reviewed verified by ORBi

Huynh-Thu, V. A., Irrthum, A., Wehenkel, L., & Geurts, P. (September 2010). Inferring regulatory networks from expression data using tree-based methods [Poster presentation]. ECCB 2010, Ghent, Belgium.
Peer reviewed

Geurts, P., Irrthum, A., & Wehenkel, L. (December 2009). Supervised learning with decision tree-based methods in computational and systems biology. Molecular Biosystems, 5 (12), 1593-1605. doi:10.1039/b907946g
Peer Reviewed verified by ORBi

Huynh-Thu, V. A., Irrthum, A., Wehenkel, L., & Geurts, P. (September 2009). Inferring regulatory networks from expression data using tree-based methods [Poster presentation]. Benelux Bioinformatics Conference (BBC09), Liège, Belgium.
Peer reviewed

Huynh-Thu, V. A., Irrthum, A., Wehenkel, L., & Geurts, P. (2009). Inferring regulatory networks from expression data using tree-based methods [Paper presentation]. 2009 joint conference on Systems Biology, Regulatory Genomics, and Reverse Engineering Challenges, Boston, United States - Massachusetts.
Editorial reviewed

Irrthum, A., & Wehenkel, L. (2008). Predicting gene essentiality from expression patterns in Escherichia coli [Paper presentation]. Machine Learning in Systems Biology.
Peer reviewed

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